Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  310  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104813137--104813277
54
2.6
53
85
4
174
17
20
24
37
1.94
104813137--104813277
27
5.2
26
77
6
129
17
20
24
37
1.94
104823402--104823440
15
2.5
15
87
4
51
69
0
5
25
1.09
104825691--104825719
15
1.9
15
100
0
58
31
13
27
27
1.94
104832020--104832061
20
2.1
20
86
0
57
35
11
2
50
1.52
104835246--104835404
43
3.7
43
83
10
200
31
27
17
23
1.97
104839024--104839067
19
2.3
19
96
4
79
29
40
18
11
1.85
104844493--104844551
15
4.0
14
83
12
73
57
3
3
35
1.32
104844584--104844651
17
3.9
17
69
23
52
67
7
1
23
1.24
104853254--104853340
11
7.7
12
89
7
130
17
1
0
81
0.75
104853254--104853340
6
15.3
6
89
8
130
17
1
0
81
0.75
104853254--104853340
17
5.1
17
95
2
149
17
1
0
81
0.75
104855478--104855585
26
4.2
26
93
0
189
32
7
24
36
1.83
104857182--104857322
27
5.2
27
82
11
173
18
24
22
34
1.96
104857179--104857322
54
2.7
54
93
2
236
18
24
22
34
1.96
104857182--104857339
27
5.9
27
82
11
155
19
24
20
34
1.96
104857182--104857339
81
2.0
80
82
8
196
19
24
20
34
1.96
104860757--104860859
17
6.6
16
66
26
53
42
1
2
52
1.27
104860769--104860817
18
2.5
19
87
9
64
42
0
2
55
1.11
104863170--104863231
27
2.3
28
81
10
76
58
6
1
33
1.34
104869885--104869940
26
2.2
26
100
0
112
30
7
26
35
1.83
104871421--104871473
26
2.0
26
85
7
72
37
22
15
24
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104875834--104876309
44
10.8
44
76
12
397
27
26
16
29
1.97
104875836--104876265
176
2.4
176
91
0
682
28
26
16
28
1.97
104875962--104876397
220
2.0
220
88
1
642
27
25
16
30
1.97
104877353--104877399
7
6.4
7
81
18
60
0
14
0
85
0.61
104877354--104877399
5
9.8
5
82
17
55
0
15
0
84
0.62
104877353--104877399
15
3.2
15
88
8
62
0
14
0
85
0.61
104890319--104890409
19
4.9
19
92
8
161
37
10
15
36
1.83
104890319--104890416
35
2.7
37
87
12
150
37
10
15
36
1.81
104890608--104890649
18
2.2
20
87
8
61
9
11
9
69
1.38
104902193--104902780
220
2.7
220
90
0
899
33
19
20
26
1.96
104902723--104903010
78
3.5
78
84
8
344
31
18
25
25
1.97
104902879--104903152
45
6.1
45
76
6
241
32
15
26
25
1.96
104902951--104903152
89
2.3
90
82
3
255
34
14
27
23
1.94
104902879--104903152
134
2.0
135
82
6
331
32
15
26
25
1.96
104903504--104903601
35
2.7
37
87
12
150
37
10
16
35
1.82
104903504--104903594
19
4.9
19
92
8
161
37
10
15
36
1.83
104903504--104903617
19
5.8
22
87
10
96
36
9
15
37
1.81
104909926--104910005
39
2.1
39
97
0
151
33
21
16
28
1.95
104915346--104915379
16
2.1
16
94
0
59
41
0
2
55
1.15
104916020--104916095
26
2.9
25
73
15
64
63
1
1
34
1.11
104916276--104916338
25
2.6
25
82
9
78
26
6
3
63
1.34
104917733--104917757
12
2.1
12
100
0
50
60
8
0
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104922782--104922819
9
4.2
9
86
0
58
44
15
10
28
1.80
104923162--104923201
20
1.9
22
90
10
66
22
20
0
57
1.41
104923319--104923347
9
3.2
9
100
0
58
31
0
0
68
0.89
104933972--104934026
19
2.7
21
81
13
62
14
3
5
76
1.10
104936813--104936870
24
2.3
25
91
8
100
34
6
6
51
1.55
104938161--104938213
26
2.0
26
82
7
63
26
15
20
37
1.92
104939702--104939757
26
2.2
26
100
0
112
35
26
7
30
1.83
104944959--104945017
10
5.9
10
84
7
84
67
1
10
20
1.28
104945638--104945668
8
3.9
8
100
0
62
0
9
0
90
0.46
104945637--104945671
8
4.1
9
92
7
56
0
11
0
88
0.51
104945672--104945871
99
2.0
100
87
2
287
32
25
14
28
1.94
104946981--104947026
15
2.9
15
84
9
56
73
0
2
23
0.94
104946979--104947038
28
2.1
28
82
11
70
76
0
3
20
0.92
104950733--104950764
15
2.0
17
88
11
50
25
0
31
43
1.55
104951506--104951572
33
2.0
33
91
0
107
25
13
22
38
1.90
104951585--104951710
63
2.0
63
98
0
243
24
15
23
36
1.94
104953932--104953990
10
5.9
10
77
15
68
67
3
8
20
1.31
104953932--104953989
30
1.9
30
96
0
107
67
3
8
20
1.33
104957673--104957733
22
2.8
22
85
5
70
39
16
24
19
1.92
104958719--104958780
5
12.8
5
83
13
85
58
1
0
40
1.08
104974878--104974937
27
2.3
27
94
2
104
33
26
18
21
1.96
104978888--104978912
13
1.9
13
100
0
50
48
8
0
44
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104986572--104986629
24
2.5
24
88
2
82
27
18
17
36
1.94
104991100--104991162
32
1.9
33
90
3
101
14
34
28
22
1.93
104993084--104993128
12
3.8
12
82
11
58
53
8
17
20
1.70
104993927--104993985
30
1.9
31
89
3
93
32
0
25
42
1.55
104994725--104994768
23
1.9
23
90
0
70
20
15
13
50
1.78
105006939--105006971
16
2.0
17
88
5
50
27
33
15
24
1.95
105009064--105009121
30
1.9
30
82
0
71
24
1
29
44
1.63
105013233--105013373
39
3.6
39
84
1
185
44
19
4
30
1.72
105016301--105016408
26
4.2
26
91
0
180
35
24
8
32
1.85
105019313--105019420
26
4.2
26
93
0
189
30
6
25
37
1.81
105026373--105026480
26
4.2
26
92
0
180
32
5
25
37
1.79
105027075--105027145
30
2.4
30
92
0
115
38
7
25
29
1.82
105027088--105027146
30
2.0
30
100
0
118
38
6
23
30
1.81
105030429--105030480
23
2.3
22
80
9
59
42
11
15
30
1.82
105042833--105042879
22
2.2
21
84
3
58
36
21
8
34
1.84
105042850--105042947
19
5.2
19
88
7
146
35
15
9
39
1.79
105042850--105042947
36
2.6
37
87
9
135
35
15
9
39
1.79
105043343--105044694
206
6.6
206
91
0
2096
28
21
18
31
1.97
105044664--105045134
44
10.7
44
74
10
372
28
24
16
30
1.97
105044658--105045011
132
2.7
132
94
0
609
27
24
16
31
1.96
105044742--105045134
175
2.2
176
88
0
563
27
24
16
31
1.97
105045988--105046054
7
8.7
7
76
16
62
4
13
0
82
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105046017--105046056
9
4.6
9
84
6
55
2
10
0
87
0.63
105045988--105046057
31
2.3
30
82
4
86
4
12
0
82
0.80
105045988--105046055
16
4.3
16
78
10
77
4
13
0
82
0.82
105047015--105047046
11
2.9
11
100
0
64
46
15
9
28
1.77
105052333--105052398
19
3.2
21
87
6
64
36
19
9
34
1.84
105052350--105052447
19
5.2
19
92
7
164
35
16
10
37
1.82
105052350--105052447
36
2.6
37
90
9
153
35
16
10
37
1.82
105054474--105054524
23
2.0
24
85
14
68
31
37
3
27
1.75
105057108--105057158
5
10.2
5
100
0
102
39
0
0
60
0.97
105058712--105058905
45
4.3
45
93
0
327
18
18
21
41
1.90
105059079--105059173
18
5.3
18
73
14
70
35
11
14
37
1.83
105061576--105061673
45
2.2
44
90
1
151
35
25
17
21
1.95
105061276--105061872
301
2.0
302
93
0
1016
35
19
13
31
1.91
105073076--105073178
5
19.2
5
75
18
84
17
4
0
76
1.01
105073100--105073126
14
1.9
14
100
0
54
14
3
0
81
0.82
105073078--105073178
11
9.3
11
75
10
93
16
4
0
77
1.00
105073078--105073178
6
17.5
6
74
12
70
16
4
0
77
1.00
105073078--105073178
17
6.2
16
73
15
64
16
4
0
77
1.00
105079195--105079307
45
2.5
45
88
0
154
30
24
17
26
1.97
105091605--105091633
6
4.8
6
100
0
58
82
0
17
0
0.66
105092980--105093024
14
3.1
14
87
3
63
28
28
15
26
1.96
105093127--105093211
22
3.8
22
75
9
91
34
21
10
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105093125--105093251
45
2.8
45
84
0
155
33
19
12
33
1.90
105097306--105097342
14
2.8
13
88
11
58
21
5
10
62
1.48
105099876--105099916
13
3.4
13
80
19
52
39
48
2
9
1.49
105099941--105099981
6
6.5
6
83
10
55
78
4
0
17
0.93
105099944--105099983
20
2.0
20
90
0
62
75
7
0
17
1.03
105100001--105100059
9
6.6
9
82
0
73
27
6
18
47
1.74
105100001--105100068
18
3.8
18
86
0
91
27
5
17
48
1.70
105100001--105100068
27
2.5
27
76
9
75
27
5
17
48
1.70
105100009--105100068
9
6.7
9
77
7
50
28
6
16
48
1.71
105101506--105101549
20
2.2
20
91
0
70
40
11
20
27
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373