Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  334  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112002379--112002655
76
3.7
73
86
6
344
33
19
15
31
1.93
112002374--112003024
72
8.5
73
78
12
589
33
20
15
30
1.94
112002643--112002669
14
1.9
14
100
0
54
59
7
18
14
1.58
112002564--112002745
90
2.1
86
83
9
233
36
18
17
26
1.93
112002651--112003038
75
5.2
72
82
9
426
34
20
16
29
1.94
112002379--112002969
313
1.9
315
96
1
1107
34
19
15
30
1.93
112003042--112003216
70
2.5
70
83
4
203
34
22
14
28
1.93
112011470--112011505
12
3.0
12
95
0
63
41
5
25
27
1.77
112013041--112013097
24
2.4
24
75
19
64
63
5
3
28
1.33
112013049--112013086
15
2.5
16
79
12
53
63
7
0
28
1.23
112013053--112013086
8
4.5
8
89
10
54
61
8
0
29
1.26
112013048--112013093
16
2.9
16
80
9
58
63
6
2
28
1.31
112013206--112013260
19
2.8
20
70
8
60
56
5
7
30
1.49
112013239--112013303
25
2.8
24
83
6
80
52
6
7
33
1.55
112013326--112013409
27
3.2
26
75
16
84
57
1
3
38
1.24
112013328--112013461
25
5.6
25
71
11
102
57
2
3
36
1.29
112013938--112014082
30
4.8
30
86
6
116
22
4
46
26
1.69
112013977--112014107
30
4.4
30
92
0
208
19
3
48
27
1.66
112013947--112014107
60
2.7
60
85
1
216
21
3
47
27
1.67
112019367--112019408
18
2.4
18
80
15
52
47
42
0
9
1.36
112019480--112019531
19
2.8
19
85
8
81
51
44
0
3
1.19
112019481--112019531
17
2.8
18
85
8
77
52
43
0
3
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112020505--112020574
28
2.4
30
76
11
74
31
1
7
60
1.33
112032752--112032945
98
2.0
98
97
0
370
26
25
16
31
1.96
112033247--112033283
17
2.2
17
90
0
56
51
21
2
24
1.61
112035315--112035357
6
7.0
6
86
2
50
34
13
16
34
1.88
112035305--112035352
24
2.0
24
87
0
69
33
12
16
37
1.86
112042355--112042407
3
17.7
3
76
0
52
58
1
5
33
1.32
112042356--112042396
21
2.0
21
95
0
73
56
0
4
39
1.21
112042358--112042406
21
2.3
21
86
6
64
57
2
6
34
1.35
112042516--112042575
15
3.9
15
75
14
59
75
1
3
20
1.04
112042511--112042577
33
2.0
33
86
11
93
73
1
5
19
1.12
112042516--112042575
14
4.5
13
77
10
50
75
1
3
20
1.04
112043830--112044101
44
6.0
45
69
13
159
30
21
16
31
1.95
112043738--112044624
88
9.8
88
71
12
433
29
20
17
33
1.95
112044199--112044627
44
9.8
44
76
5
391
28
19
18
33
1.95
112044169--112044538
132
2.8
131
83
4
494
28
20
18
32
1.96
112044199--112044629
220
2.0
220
81
4
521
28
19
18
33
1.95
112046277--112046312
18
2.0
18
100
0
72
38
16
22
22
1.93
112046677--112046714
19
2.0
19
85
10
51
13
21
44
21
1.85
112047395--112047460
33
2.0
34
84
3
89
28
24
22
24
1.99
112052645--112052709
23
2.8
23
79
9
62
43
15
6
35
1.72
112060392--112060435
23
1.9
23
81
9
54
40
11
9
38
1.73
112070018--112070057
21
1.9
21
94
0
71
55
0
5
40
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112070019--112070067
21
2.3
21
86
6
64
57
2
6
34
1.35
112070194--112070220
12
2.2
12
100
0
54
66
0
7
25
1.17
112070173--112070207
18
1.9
18
94
0
61
71
2
2
22
1.13
112081529--112081571
21
2.1
20
91
4
68
27
11
4
55
1.55
112081602--112081634
14
2.4
14
90
10
50
27
6
0
66
1.15
112081671--112081705
3
11.7
3
100
0
70
31
0
0
68
0.90
112081683--112081747
29
2.4
28
82
12
82
21
4
3
70
1.19
112081813--112081853
12
3.4
12
86
0
55
26
7
0
65
1.18
112081982--112082066
24
3.6
23
80
6
89
30
5
2
61
1.32
112083469--112083514
23
2.0
23
84
12
60
45
10
6
36
1.65
112083476--112083520
23
2.0
23
82
8
56
40
13
8
37
1.76
112086670--112086784
28
4.1
28
88
2
115
47
17
21
13
1.81
112087526--112087641
57
2.0
58
83
1
144
47
6
18
27
1.72
112092083--112092131
19
2.6
19
96
0
89
36
8
12
42
1.72
112092083--112092141
19
3.1
19
85
9
59
37
8
11
42
1.72
112092581--112092634
15
3.3
15
74
18
54
44
0
1
53
1.11
112092667--112092703
16
2.3
16
86
13
58
40
0
0
59
0.97
112092715--112092770
22
2.6
22
83
5
62
51
0
0
48
1.00
112092749--112092781
16
2.1
16
94
0
57
45
0
3
51
1.16
112104644--112104676
16
2.0
17
88
5
50
48
0
0
51
1.00
112104651--112104754
15
7.2
15
67
22
62
47
1
0
50
1.19
112105133--112105179
22
2.1
22
84
4
58
48
0
6
44
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112110230--112110365
51
2.7
51
78
0
164
39
6
13
40
1.70
112113129--112113264
51
2.7
51
78
0
164
39
6
13
40
1.70
112117028--112117064
19
1.9
19
88
0
56
43
2
16
37
1.62
112122179--112122226
24
2.0
24
100
0
96
50
12
8
29
1.69
112124294--112124347
26
2.1
27
82
6
67
24
14
24
37
1.93
112124326--112124385
27
2.3
26
82
8
68
31
10
20
38
1.85
112125834--112125941
26
4.2
26
93
0
189
36
24
7
32
1.83
112126358--112126533
70
2.3
75
83
11
202
42
0
18
38
1.55
112126541--112126579
13
2.8
14
84
7
53
61
0
10
28
1.28
112126892--112126980
23
4.0
23
79
7
103
19
19
22
39
1.93
112133278--112133317
13
2.9
14
85
7
55
0
10
12
77
0.99
112140614--112140648
17
2.1
17
100
0
70
22
11
17
48
1.79
112140903--112140996
44
2.1
46
84
7
122
36
24
5
34
1.78
112140978--112141033
16
3.5
16
87
0
85
26
28
7
37
1.83
112176062--112176090
6
4.8
6
100
0
58
0
13
0
86
0.58
112176062--112176101
18
2.2
18
86
8
55
0
15
5
80
0.88
112178634--112178806
46
3.8
45
79
13
208
22
20
27
29
1.99
112178631--112178801
93
1.8
93
96
0
315
22
21
28
28
1.99
112182975--112183018
9
4.8
9
77
5
52
34
2
40
22
1.67
112184311--112184541
124
1.9
124
89
0
363
32
16
9
42
1.80
112185948--112186002
16
3.4
16
70
5
56
21
5
5
67
1.32
112185939--112186010
33
2.2
33
97
0
135
20
9
5
63
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112185942--112185995
17
3.2
17
68
5
56
22
5
7
64
1.40
112186760--112186826
30
2.2
30
97
0
125
44
2
13
38
1.59
112189027--112189097
22
3.2
22
74
6
63
56
4
0
39
1.19
112191215--112191279
30
2.2
30
88
5
96
61
12
3
23
1.45
112193158--112193214
28
2.0
29
86
3
80
29
21
17
31
1.96
112193225--112193324
29
3.5
29
80
1
112
43
22
12
23
1.86
112193223--112193412
29
6.6
27
70
11
76
38
21
15
23
1.92
112194102--112194379
46
6.0
46
89
2
380
20
22
14
42
1.89
112196475--112196506
11
2.9
11
90
0
55
71
0
3
25
1.00
112196460--112196506
11
3.8
12
78
15
51
72
0
2
25
0.96
112196480--112196555
20
3.7
21
77
10
68
59
6
1
32
1.32
112197910--112198023
56
2.0
56
98
0
219
35
21
7
35
1.80
112199447--112199720
46
6.0
46
85
3
329
21
22
14
40
1.90
112199452--112199723
92
3.0
92
87
2
386
21
22
14
41
1.90
112199462--112199710
138
1.8
138
88
1
383
20
22
14
41
1.89
112201889--112201937
20
2.5
20
86
6
64
57
6
0
36
1.24
112201868--112201948
21
3.8
21
77
12
69
59
6
1
33
1.30
112203692--112203835
46
3.1
46
74
14
143
29
28
19
22
1.98
112208344--112208368
13
1.9
13
100
0
50
56
20
0
24
1.43
112209702--112209745
14
3.0
14
80
6
52
45
6
0
47
1.29
112217907--112217950
14
3.0
14
80
6
52
45
6
0
47
1.29
112220111--112220179
21
3.3
21
95
0
120
23
26
39
11
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112221367--112221741
48
7.8
48
85
1
351
22
27
20
28
1.99
112221367--112221744
96
3.9
95
82
4
393
23
27
20
28
1.99
112224381--112224432
5
10.0
5
79
8
50
19
0
7
73
1.07
112242453--112242615
43
3.8
43
75
6
159
29
25
18
26
1.98
112242937--112242961
12
2.1
12
100
0
50
48
8
0
44
1.32
112243726--112243752
13
2.1
13
100
0
54
48
22
0
29
1.51
112247529--112247571
20
2.0
20
86
13
59
39
20
9
30
1.84
112250126--112250152
14
1.9
14
100
0
54
22
7
11
59
1.56
112251498--112251546
25
2.0
25
83
0
62
42
14
6
36
1.70
112253615--112253820
40
5.2
40
81
3
182
38
15
28
16
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373