Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  17  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4947538--4947623
39
2.1
41
83
10
106
59
1
0
39
1.05
4947728--4947785
11
5.3
10
76
17
53
27
1
5
65
1.23
4949590--4949628
11
3.5
11
83
16
53
71
2
0
25
0.98
4949589--4949631
14
3.1
14
84
15
54
72
2
0
25
0.97
4952932--4952971
19
2.0
22
85
14
59
32
47
2
17
1.61
4953033--4953172
27
5.2
28
90
5
184
35
22
24
17
1.96
4954770--4954853
26
3.2
26
98
0
159
34
25
7
33
1.83
4955870--4955911
20
2.0
22
86
9
61
59
7
4
28
1.44
4957817--4957861
20
2.2
21
88
11
67
11
13
0
75
1.05
4957822--4957871
21
2.5
19
78
15
57
16
12
0
72
1.13
4957811--4957876
29
2.2
29
78
7
71
16
10
1
71
1.21
4957865--4957902
13
2.9
13
80
11
51
36
0
0
63
0.95
4958829--4958863
14
2.5
14
85
0
52
14
5
40
40
1.69
4958913--4958947
14
2.5
14
100
0
70
17
0
37
45
1.48
4958819--4958982
84
2.0
84
96
0
301
21
4
29
43
1.73
4959911--4959973
11
5.5
11
75
17
58
63
3
0
33
1.10
4961075--4961187
27
4.2
26
85
7
145
38
23
23
14
1.92
4961075--4961187
54
2.1
54
90
3
174
38
23
23
14
1.92
4962807--4962916
26
4.2
26
96
0
202
37
23
4
34
1.75
4963980--4964070
19
4.9
19
85
8
134
37
15
9
37
1.81
4963980--4964070
35
2.5
37
87
8
132
37
15
9
37
1.81
4964451--4965244
207
3.8
207
94
0
1365
29
22
17
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4965296--4965525
43
5.4
43
69
14
163
24
21
22
31
1.98
4965246--4965535
84
3.4
83
85
5
420
23
22
23
31
1.98
4966483--4966565
7
11.4
7
81
15
82
1
14
0
84
0.69
4966487--4966547
22
2.5
24
82
15
81
1
14
0
83
0.72
4966483--4966547
31
2.1
32
94
2
114
1
13
0
84
0.69
4966483--4966565
31
2.8
28
82
10
87
1
14
0
84
0.69
4966483--4966565
16
5.1
16
84
13
107
1
14
0
84
0.69
4977221--4977306
44
2.0
42
82
8
102
47
12
17
22
1.81
4978921--4979089
44
3.8
43
71
7
142
28
21
23
26
1.99
4978929--4979259
89
3.6
90
77
12
309
29
21
22
25
1.99
4978984--4979128
45
3.2
45
67
5
116
32
19
24
24
1.97
4979150--4979445
44
6.6
44
73
9
156
31
22
19
25
1.98
4979196--4979356
46
3.6
46
82
2
157
32
21
19
26
1.97
4980786--4980842
23
2.4
24
77
11
64
29
5
1
63
1.27
4980844--4980877
3
11.3
3
87
12
52
32
2
0
64
1.08
4984245--4984289
22
2.0
22
100
0
90
22
8
26
42
1.83
4985744--4985793
24
2.0
25
88
3
75
64
2
2
32
1.16
4993856--4993896
21
1.9
22
95
5
75
29
17
2
51
1.58
5012850--5012986
27
5.1
27
82
11
174
18
24
21
35
1.96
5012847--5012986
54
2.6
54
93
2
237
17
25
22
35
1.96
5012851--5013008
81
2.0
80
83
8
205
19
24
21
34
1.96
5014559--5014602
19
2.3
19
84
7
54
22
0
6
70
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5014822--5014904
11
7.5
11
68
20
57
31
2
9
56
1.44
5014953--5015009
3
18.3
3
75
13
53
28
7
1
63
1.30
5014953--5015050
38
2.6
38
81
14
105
26
11
3
59
1.46
5017510--5017565
28
2.0
28
96
0
103
32
16
7
44
1.74
5019668--5019700
17
2.0
17
88
5
50
72
6
15
6
1.24
5020414--5020452
13
3.0
13
80
0
51
30
0
0
69
0.89
5020484--5020530
3
15.0
3
82
8
58
31
4
0
63
1.13
5020484--5020528
13
3.5
13
87
3
65
31
4
0
64
1.13
5020484--5020530
16
2.9
16
77
20
53
31
4
0
63
1.13
5020760--5020819
3
20.7
3
79
3
61
25
3
5
66
1.27
5022700--5022807
26
4.2
26
90
0
171
31
6
25
37
1.81
5028636--5028675
3
13.3
3
100
0
80
67
0
0
32
0.91
5029291--5029616
3
108.7
3
77
7
297
30
6
1
61
1.29
5029684--5029722
18
2.2
18
85
0
51
15
5
2
76
1.06
5031875--5031919
15
3.0
15
90
6
65
33
24
6
35
1.82
5034354--5034523
46
3.7
46
77
10
193
30
30
20
20
1.97
5034361--5034533
93
1.9
93
91
0
283
29
30
20
20
1.97
5048481--5048518
19
2.0
20
94
5
69
0
18
5
76
0.97
5053261--5053728
143
3.3
143
86
2
713
31
18
22
27
1.97
5053357--5053474
46
2.6
44
82
6
139
30
19
21
28
1.97
5055190--5055226
3
12.3
3
100
0
74
32
32
0
35
1.58
5055225--5055394
3
56.7
3
80
3
173
30
5
1
61
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5055230--5055394
65
2.5
65
82
6
170
30
6
1
61
1.30
5059695--5059757
28
2.1
31
83
13
80
57
0
0
42
0.99
5061812--5062108
144
2.0
147
88
2
447
46
9
14
29
1.76
5065739--5065803
20
3.5
18
70
17
53
33
1
0
64
1.03
5070529--5070601
34
2.1
34
100
0
146
17
27
31
23
1.97
5074666--5074738
7
9.9
7
75
16
58
36
1
0
61
1.05
5074665--5074739
10
7.5
10
71
21
59
36
1
0
62
1.04
5074689--5074753
30
2.1
31
86
8
89
35
4
0
60
1.18
5078683--5078829
75
2.0
75
95
0
267
38
13
21
25
1.90
5079833--5079859
13
2.1
13
100
0
54
62
0
7
29
1.22
5080418--5080486
3
23.0
3
73
16
54
59
1
4
34
1.26
5081427--5081498
31
2.3
31
95
0
126
16
18
47
18
1.83
5081899--5082768
44
19.9
43
68
11
302
22
20
20
35
1.96
5081902--5082459
87
6.4
85
73
8
424
22
20
20
36
1.95
5082111--5082903
309
2.6
309
96
0
1460
23
21
20
34
1.97
5082249--5082447
43
4.6
44
73
5
163
20
21
22
36
1.96
5082561--5082768
87
2.4
87
88
0
308
21
20
21
37
1.95
5087579--5087622
18
2.4
18
96
0
79
9
43
18
29
1.80
5093556--5093713
74
2.1
74
96
0
289
36
15
23
24
1.94
5093759--5093783
12
2.1
12
100
0
50
0
32
36
32
1.58
5094153--5094224
31
2.3
31
95
0
126
16
18
47
18
1.83
5095946--5096056
56
2.0
55
96
3
206
39
3
10
45
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5100291--5100359
30
2.3
31
94
5
131
44
2
5
46
1.42
5100293--5100340
15
3.2
15
71
11
53
41
4
4
50
1.41
5101200--5101317
58
2.0
58
96
0
218
27
22
20
30
1.98
5103999--5104044
19
2.3
20
88
3
67
54
0
0
45
0.99
5104012--5104075
19
3.4
18
75
18
51
59
1
0
39
1.07
5104388--5104460
32
2.5
29
80
12
71
23
5
1
69
1.17
5104574--5104673
19
5.4
19
74
15
77
30
3
1
66
1.13
5104564--5104671
28
3.8
27
71
11
83
28
2
1
66
1.16
5105158--5105226
29
2.3
29
83
14
79
20
1
7
71
1.18
5105172--5105229
24
2.5
23
72
22
59
17
1
5
75
1.06
5109054--5109098
21
2.1
21
83
0
54
22
33
26
17
1.96
5110191--5110270
27
2.9
27
83
5
97
33
20
25
21
1.97
5110386--5110478
28
3.3
28
96
0
168
31
7
26
34
1.84
5110725--5110756
8
4.0
8
91
0
55
3
25
25
46
1.67
5115275--5115319
11
4.1
12
75
18
53
60
0
0
40
0.97
5115673--5115723
25
2.0
25
84
0
66
43
9
31
15
1.80
5116827--5116863
14
2.6
14
91
0
56
29
10
24
35
1.89
5117156--5117399
122
2.0
122
98
0
470
36
18
13
30
1.90
5121418--5121507
42
2.2
42
97
2
173
53
11
11
24
1.68
5121562--5121614
25
2.1
25
89
6
81
79
0
5
15
0.91
5123258--5124056
44
17.6
44
72
9
417
32
16
20
30
1.95
5123258--5124056
89
8.8
89
68
13
295
32
16
20
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5123304--5123571
139
1.9
139
83
3
342
31
16
21
30
1.95
5123252--5123933
89
7.5
93
70
11
340
32
16
21
30
1.95
5123252--5123934
366
1.9
366
80
3
820
32
16
21
30
1.95
5123252--5123934
183
3.7
182
82
3
685
32
16
21
30
1.95
5124404--5124513
26
4.2
26
92
2
177
35
5
23
35
1.78
5126130--5126244
27
4.3
26
84
7
140
17
23
22
36
1.95
5126130--5126244
54
2.1
54
87
3
160
17
23
22
36
1.95
5128500--5128550
21
2.4
20
83
9
57
25
1
0
72
0.95
5130743--5130789
18
2.5
20
86
13
73
57
4
6
31
1.43
5130864--5130930
34
2.0
33
82
8
82
53
1
5
38
1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373