genome.fa.s8.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  147  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48777763--48777863	27	3.8	26	79	10	87	38	19	22	18	1.93
48778513--48778788	27	10.3	27	88	0	347	27	20	18	33	1.96
48778770--48779059	27	10.7	27	79	4	235	32	8	20	38	1.84
48778891--48779059	27	6.3	27	88	0	248	31	8	20	39	1.83
48781798--48781838	18	2.3	18	91	0	64	17	19	17	46	1.85
48785566--48785655	45	2.0	45	97	0	171	45	13	10	31	1.76
48796038--48796140	38	2.7	37	89	3	152	33	23	22	20	1.97
48797289--48797345	2	28.5	2	92	0	96	49	47	1	1	1.22
48800245--48800354	31	3.5	31	93	0	193	28	28	17	26	1.97
48800376--48800469	42	2.2	42	90	0	152	35	18	13	32	1.90
48800589--48800660	25	3.0	23	84	10	81	29	23	19	27	1.98
48800603--48800686	25	3.4	23	82	9	87	28	23	20	27	1.99
48801495--48801559	27	2.4	27	79	5	69	23	24	16	35	1.95
48801611--48801722	27	3.9	30	80	12	110	36	8	15	39	1.78
48801648--48801722	30	2.6	29	87	6	98	34	5	16	44	1.70
48801697--48801802	27	3.9	27	92	2	160	32	6	21	39	1.79
48801706--48801821	27	4.3	28	89	6	152	27	7	23	41	1.81
48801697--48801835	54	2.6	55	80	6	160	32	9	19	38	1.84
48801834--48801925	27	3.4	27	82	5	114	42	7	22	27	1.80
48801825--48801950	54	2.3	53	77	11	130	38	9	22	30	1.86
48806374--48806596	40	5.6	40	85	3	236	26	27	21	24	1.99
48806528--48806605	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48815724--48815783	11	5.7	11	84	9	81	36	13	18	31	1.89
48815831--48815920	25	3.6	25	90	0	135	26	24	23	25	2.00
48816144--48816223	31	2.6	31	88	6	117	35	17	23	23	1.96
48827411--48827465	27	2.0	27	96	0	101	30	9	10	49	1.69
48827531--48827817	142	2.0	137	84	8	367	39	13	13	34	1.83
48831713--48831739	11	2.5	11	100	0	54	29	18	11	40	1.85
48838869--48839080	80	2.7	80	93	2	356	25	22	26	25	2.00
48838869--48839057	40	4.7	40	94	0	333	24	22	27	25	2.00
48843997--48844022	8	3.2	8	100	0	52	65	23	11	0	1.25
48845004--48845055	27	1.9	27	84	7	70	19	23	25	32	1.97
48846542--48846713	93	1.8	93	91	2	283	28	29	20	22	1.98
48846534--48846709	46	3.8	46	74	14	182	29	28	19	22	1.98
48846585--48846729	46	3.1	45	69	21	111	31	27	18	22	1.97
48848695--48848941	40	6.2	40	86	3	322	25	21	26	26	2.00
48848691--48848914	119	1.9	119	87	2	333	25	21	26	26	2.00
48856742--48856952	39	5.6	39	79	17	243	22	23	28	25	1.99
48856837--48856985	79	1.9	79	87	2	219	26	21	26	24	1.99
48856841--48856985	39	3.7	38	85	5	173	26	22	26	24	2.00
48876439--48876567	46	2.8	46	89	2	197	20	20	29	30	1.97
48879810--48880097	50	5.7	50	77	2	274	25	18	28	27	1.98
48879799--48880086	101	2.9	101	87	2	411	24	18	29	27	1.98
48881367--48881548	50	3.7	49	83	7	197	29	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48881367--48881559	101	1.9	99	86	4	271	28	29	17	24	1.97
48884328--48884371	15	2.9	15	77	12	54	11	15	15	56	1.66
48886807--48886896	46	2.0	46	95	0	162	21	22	28	27	1.99
48886808--48886918	46	2.4	46	85	5	152	21	22	28	27	1.99
48907978--48908072	27	3.5	26	80	8	109	15	20	22	42	1.89
48907961--48908072	54	2.1	54	85	6	147	16	21	23	39	1.92
48913881--48913908	14	2.0	14	100	0	56	50	7	0	42	1.30
48914357--48914454	27	3.5	28	90	2	135	26	13	28	31	1.94
48914385--48914467	27	3.0	27	87	5	96	30	12	25	32	1.92
48920289--48920367	37	2.1	37	86	4	106	25	29	20	25	1.99
48920486--48920692	47	4.4	47	90	0	306	28	29	9	33	1.88
48923178--48923249	26	2.7	26	83	14	78	34	23	11	30	1.90
48923367--48923466	27	3.7	26	80	9	110	17	23	22	38	1.93
48925179--48925333	41	3.8	41	82	4	179	21	16	6	56	1.62
48925182--48925335	81	1.9	82	87	4	231	20	15	7	55	1.65
48925182--48925355	41	4.3	40	77	13	142	21	16	6	54	1.65
48925477--48925557	41	2.0	41	92	0	135	33	6	22	38	1.79
48927844--48927913	22	3.1	22	76	11	79	22	24	18	34	1.96
48927822--48927913	45	2.0	48	85	10	129	23	23	18	33	1.97
48927829--48927907	23	3.3	23	74	15	72	25	24	18	31	1.98
48927920--48927960	20	2.0	20	90	0	64	31	14	29	24	1.95
48931828--48931867	21	2.0	20	85	5	53	17	25	42	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48933068--48933337	49	5.7	46	73	15	178	24	28	18	28	1.98
48933068--48933337	93	2.8	95	78	9	282	24	28	18	28	1.98
48941549--48941718	40	4.3	40	90	0	234	24	20	27	27	1.99
48960765--48960893	50	2.5	51	92	2	215	35	17	22	24	1.95
48960869--48960955	31	2.8	30	87	6	120	26	18	28	26	1.98
48961110--48961135	12	2.2	12	100	0	52	34	7	26	30	1.85
48961128--48961242	42	2.7	43	86	4	153	32	14	26	26	1.95
48963507--48963633	39	3.3	39	87	4	175	25	27	22	24	2.00
48963472--48963627	78	2.0	77	81	6	181	25	28	21	24	1.99
48970555--48970589	18	1.9	18	94	0	61	40	0	0	60	0.97
48977448--48977507	21	2.9	21	97	0	111	16	36	20	26	1.93
48983396--48983452	30	1.9	30	92	0	96	29	15	28	26	1.96
48987017--48987134	43	2.8	42	79	2	137	24	16	25	33	1.96
48992180--48992434	90	2.8	92	82	6	288	34	19	10	35	1.86
48992180--48992434	91	2.8	88	80	8	260	34	19	10	35	1.86
48992180--48992458	93	3.0	88	77	7	254	37	18	10	34	1.84
48992974--48993055	21	4.0	21	71	16	57	30	4	0	64	1.14
48992979--48993075	10	9.8	10	70	10	56	32	3	0	63	1.10
48993013--48993075	19	3.3	18	78	8	63	31	3	0	65	1.09
48994667--48994700	16	2.1	17	88	5	52	38	0	2	58	1.13
48994722--48994762	20	2.0	20	86	9	57	56	4	0	39	1.21
48998521--48998556	14	2.6	14	95	0	63	25	58	16	0	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49000223--49000303	37	2.2	36	85	12	103	34	2	4	58	1.33
49002306--49002330	12	2.1	12	100	0	50	68	8	0	24	1.16
49002589--49002615	12	2.2	12	100	0	54	59	7	7	25	1.51
49002627--49002664	17	2.2	18	86	13	53	73	0	5	21	1.02
49008681--49008735	25	2.2	25	90	3	85	49	21	7	21	1.74
49019135--49019211	31	2.3	34	85	12	99	37	5	3	53	1.42
49019213--49019237	12	2.1	12	100	0	50	52	0	0	48	1.00
49022609--49022642	16	2.1	17	88	5	52	47	0	26	26	1.53
49025309--49025471	43	3.8	42	80	9	161	31	25	16	26	1.96
49028595--49028645	21	2.4	22	83	3	59	27	5	1	64	1.27
49031204--49031386	46	4.0	45	75	7	181	24	29	18	27	1.98
49031204--49031377	94	1.9	92	84	4	233	24	29	18	28	1.98
49031706--49031765	30	2.0	30	86	0	84	31	25	13	30	1.93
49034479--49034511	7	5.0	7	89	10	52	57	0	0	42	0.98
49039991--49040026	18	2.0	18	94	0	63	58	5	5	30	1.44
49041155--49041193	14	2.8	14	96	0	69	17	0	12	69	1.19
49041402--49041433	11	3.0	11	95	4	57	75	0	0	25	0.81
49043181--49043449	46	5.8	46	73	14	221	21	19	29	29	1.98
49043227--49043395	47	3.6	47	73	13	177	21	18	28	30	1.97
49043177--49043440	93	2.8	93	92	0	438	21	20	29	28	1.98
49045229--49045270	19	2.2	19	95	0	75	47	16	4	30	1.67
49048833--49049118	47	6.1	47	92	0	464	31	9	31	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49049237--49049315	37	2.1	37	88	4	115	26	18	29	25	1.98
49051183--49051250	28	2.4	28	97	0	127	23	13	32	30	1.93
49051238--49051311	29	2.6	29	89	4	105	25	16	32	25	1.96
49051701--49051897	40	4.9	40	90	0	304	26	22	25	24	2.00
49051622--49051897	80	3.5	79	83	4	315	26	22	26	24	2.00
49055584--49056108	47	11.1	47	93	1	834	32	8	29	28	1.88
49055584--49056053	143	3.3	143	95	1	854	32	8	28	30	1.87
49056227--49056305	37	2.1	37	86	4	106	25	17	30	26	1.97
49067446--49067506	30	2.0	30	83	0	77	31	22	8	37	1.84
49072300--49072419	46	2.6	46	97	2	224	32	29	15	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373