Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  311  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105102640--105102718
41
1.9
41
97
0
149
26
15
12
45
1.82
105104768--105104821
24
2.3
23
81
12
65
50
27
1
20
1.59
105108561--105108708
40
3.7
40
87
5
194
24
22
24
28
2.00
105116929--105116999
37
1.9
37
91
2
117
36
16
21
25
1.94
105118423--105118478
28
1.9
29
82
13
71
55
10
1
32
1.45
105122492--105122599
26
4.2
26
90
4
173
36
23
7
33
1.83
105125376--105125464
23
3.9
23
77
0
97
35
14
16
32
1.90
105125765--105125861
16
6.1
16
76
7
72
40
6
6
47
1.54
105127991--105128054
20
3.2
20
100
0
128
59
18
6
15
1.57
105128961--105129063
52
2.0
52
98
0
197
30
9
16
43
1.80
105129038--105129079
16
2.6
16
100
0
84
35
9
14
40
1.78
105130719--105130893
46
3.7
47
79
9
180
29
17
29
24
1.97
105134153--105134242
45
2.0
45
91
0
144
38
23
8
28
1.85
105137887--105137946
6
9.8
6
76
16
61
46
15
20
18
1.84
105137896--105137974
31
2.5
31
85
4
106
48
13
18
18
1.81
105138193--105138244
27
2.0
26
84
3
68
34
17
26
21
1.95
105138489--105138633
27
5.4
27
86
3
168
24
20
18
35
1.95
105138613--105138901
27
10.7
27
82
1
242
32
7
21
39
1.81
105140854--105140953
6
16.3
6
78
15
107
48
17
18
17
1.82
105140854--105140953
31
3.3
31
87
6
134
48
17
18
17
1.82
105141073--105141132
27
2.3
26
82
2
66
36
20
21
21
1.95
105141172--105141222
27
1.9
26
84
4
66
35
19
27
17
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105141471--105141600
27
4.8
26
82
1
125
24
21
17
36
1.95
105141471--105141600
54
2.4
55
83
5
167
24
21
17
36
1.95
105141605--105141678
27
2.7
27
79
8
78
33
9
24
32
1.87
105141629--105141906
27
10.3
27
86
1
299
31
9
20
38
1.85
105165658--105165711
23
2.4
23
81
3
56
20
14
18
46
1.84
105165670--105165719
23
2.2
23
92
0
82
20
12
16
52
1.75
105171940--105171984
17
2.7
16
82
6
54
40
4
4
51
1.42
105172069--105172133
7
8.9
7
90
9
103
44
1
0
53
1.09
105172053--105172129
24
3.3
23
82
8
95
44
2
0
53
1.14
105172053--105172124
17
3.9
19
81
16
89
44
2
0
52
1.15
105174129--105174241
26
4.3
26
94
0
199
32
7
24
35
1.83
105175689--105175765
27
2.8
27
82
9
93
36
23
9
31
1.86
105175869--105176009
54
2.6
53
90
2
210
18
23
22
35
1.96
105175869--105176009
27
5.2
27
83
10
173
18
23
22
35
1.96
105175869--105176027
27
5.9
27
80
11
148
19
23
21
35
1.96
105182653--105182686
17
1.9
18
88
5
52
50
0
0
50
1.00
105189410--105189446
2
19.0
2
88
5
58
0
51
0
48
1.00
105190768--105190813
15
3.0
16
87
9
69
45
0
0
54
0.99
105192125--105192159
11
3.4
11
88
11
56
48
0
14
37
1.44
105193310--105193387
30
2.6
30
85
0
111
29
14
24
32
1.94
105198441--105198569
27
4.8
27
80
11
140
37
17
11
32
1.86
105198957--105199060
27
3.9
27
73
7
77
20
20
19
40
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105201827--105201925
27
3.7
27
81
5
103
40
22
8
29
1.82
105201865--105201952
27
3.3
26
81
9
97
38
19
9
32
1.83
105201879--105201971
27
3.5
27
79
5
91
38
16
12
32
1.86
105201860--105201964
53
2.0
53
81
7
124
37
19
12
31
1.88
105203535--105203571
16
2.2
18
85
9
51
43
5
5
45
1.49
105204810--105204842
17
1.9
17
93
0
57
51
3
12
33
1.54
105211188--105211277
43
2.1
43
91
0
144
34
17
17
30
1.94
105216938--105217104
43
3.9
45
78
9
161
28
14
23
32
1.94
105216942--105217099
86
1.8
83
81
9
192
28
15
24
31
1.96
105218189--105218246
30
1.9
30
85
0
80
24
32
27
15
1.95
105225995--105226094
43
2.3
43
84
3
121
32
14
22
32
1.93
105232114--105232138
3
8.3
3
100
0
50
32
0
0
68
0.90
105232529--105232569
21
2.0
21
90
4
66
63
9
0
26
1.25
105238302--105238344
17
2.4
18
80
11
52
30
0
13
55
1.39
105238734--105238775
20
2.3
19
84
12
52
16
4
9
69
1.33
105241116--105241244
29
4.5
29
79
8
102
38
17
25
17
1.92
105241177--105241263
28
3.1
28
85
5
95
43
19
20
16
1.88
105244204--105244255
26
2.0
26
100
0
104
38
15
11
34
1.83
105255388--105255420
17
2.1
16
88
11
50
30
0
0
69
0.88
105255467--105255525
21
2.8
22
85
7
70
23
0
6
69
1.12
105255496--105255555
26
2.4
24
83
8
75
28
0
3
68
1.05
105256644--105256673
15
1.9
16
93
6
53
53
16
6
23
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105257721--105257776
28
2.0
28
100
0
112
50
14
7
28
1.69
105264123--105264157
19
1.9
17
88
11
52
77
0
17
5
0.96
105265677--105265729
24
2.2
24
79
0
61
52
3
9
33
1.52
105265691--105265737
24
2.0
24
87
8
69
46
6
8
38
1.60
105268215--105268397
46
3.8
46
82
12
222
27
30
21
20
1.98
105268324--105268409
46
1.9
45
88
4
129
30
29
19
20
1.97
105270546--105270616
11
6.8
11
69
23
55
42
1
1
54
1.17
105275226--105275277
24
2.2
24
82
0
59
50
9
7
32
1.64
105275941--105275965
10
2.5
10
100
0
50
68
0
0
32
0.90
105277736--105277796
29
2.0
32
84
9
83
40
6
6
45
1.56
105281966--105282003
20
1.9
20
84
10
51
26
10
26
36
1.89
105283119--105283242
59
2.1
58
89
2
187
48
5
18
27
1.70
105287528--105287562
16
2.3
15
90
5
52
54
8
0
37
1.31
105289840--105289954
51
2.3
50
81
13
128
53
7
3
35
1.47
105292155--105292203
3
16.3
3
100
0
98
67
0
0
32
0.91
105297318--105297364
21
2.2
22
92
3
78
21
19
38
21
1.94
105303288--105303627
130
2.6
131
81
3
364
33
17
19
29
1.95
105303383--105303656
130
2.1
129
83
3
352
31
15
19
32
1.93
105304909--105305197
145
2.0
146
81
6
336
51
3
10
33
1.54
105313602--105313626
11
2.3
11
100
0
50
36
16
0
48
1.46
105317837--105317910
8
9.9
7
72
22
53
82
0
14
2
0.78
105317847--105317908
5
11.8
5
79
16
63
82
0
14
3
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105317834--105317910
11
6.5
12
77
11
70
83
0
14
2
0.76
105317845--105317911
21
3.2
20
82
14
91
83
0
13
2
0.76
105317848--105317909
16
3.9
16
75
23
60
82
0
14
3
0.80
105318869--105319005
43
3.2
43
62
12
111
29
21
21
26
1.99
105318859--105319229
84
4.4
84
84
5
509
30
23
22
24
1.99
105318858--105319226
166
2.2
163
87
5
524
29
23
22
24
1.99
105319380--105319570
87
2.2
86
84
2
256
32
19
23
25
1.97
105320125--105320236
19
5.8
19
85
9
147
37
10
14
37
1.81
105320128--105320236
36
2.9
36
87
6
146
37
11
13
37
1.81
105326725--105326771
22
2.2
21
84
3
58
36
21
8
34
1.84
105326742--105326839
19
5.2
19
90
7
155
36
15
10
37
1.81
105326753--105326839
36
2.3
37
90
7
140
37
13
11
36
1.81
105333297--105333345
26
1.9
25
84
12
64
48
2
10
38
1.48
105334957--105335112
55
2.9
54
88
2
222
25
8
13
51
1.70
105336539--105336678
39
3.6
39
85
4
185
43
20
3
32
1.69
105337452--105337490
16
2.4
16
100
0
78
58
20
7
12
1.58
105342131--105342165
16
2.2
16
89
0
52
37
0
0
62
0.95
105348843--105348938
22
4.6
20
77
12
86
60
2
3
34
1.24
105350713--105350742
3
10.0
3
100
0
60
33
0
0
66
0.92
105352150--105352179
15
1.9
16
93
6
53
16
40
0
43
1.48
105354053--105354155
40
2.6
40
92
0
170
40
7
18
33
1.79
105354159--105354193
18
1.9
18
94
0
61
31
14
20
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105354917--105355010
44
2.1
44
88
4
134
35
26
5
32
1.79
105354992--105355029
16
2.4
16
95
0
67
28
31
5
34
1.80
105356415--105356506
20
4.4
22
71
10
84
41
23
10
23
1.86
105356415--105356506
42
2.2
42
96
0
166
41
23
10
23
1.86
105359340--105359603
73
3.6
74
84
4
266
32
22
15
29
1.95
105370827--105370873
19
2.3
20
76
20
53
38
4
17
40
1.69
105372774--105372853
18
4.4
18
75
0
70
37
11
15
36
1.83
105372777--105372855
36
2.2
36
79
0
86
37
10
16
35
1.82
105374490--105374541
27
1.9
27
88
0
77
34
21
23
21
1.97
105374476--105374549
27
2.7
27
76
0
76
31
21
25
21
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373