Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  313  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105654486--105654641
81
1.9
81
85
7
219
40
19
10
30
1.84
105654608--105654701
27
3.4
27
77
11
84
41
21
6
30
1.78
105654624--105654697
29
2.6
29
75
12
82
44
20
5
29
1.73
105655531--105655597
20
3.3
20
89
4
100
40
10
17
31
1.84
105655647--105655730
25
3.4
25
80
6
100
29
19
23
27
1.98
105655863--105655953
42
2.2
42
89
0
137
29
14
20
35
1.92
105655977--105656086
31
3.5
31
94
0
193
29
18
25
27
1.98
105658339--105658532
27
7.2
27
84
3
212
29
22
8
39
1.84
105658336--105658532
80
2.4
80
88
3
270
28
23
8
39
1.84
105658531--105658714
27
6.8
27
80
5
167
41
19
9
30
1.82
105658696--105658777
27
3.0
27
74
12
85
39
19
8
32
1.82
105659520--105659567
25
1.9
25
82
0
60
35
20
14
29
1.93
105659603--105659669
20
3.3
20
85
4
91
38
10
19
31
1.85
105659719--105659854
52
2.7
51
88
5
197
30
20
22
27
1.98
105659719--105659854
26
5.3
26
82
3
163
30
20
22
27
1.98
105659987--105660078
42
2.2
42
90
0
139
30
14
20
34
1.92
105660102--105660180
31
2.5
31
93
0
131
29
18
25
26
1.98
105670758--105670815
26
2.2
25
82
11
64
25
3
3
67
1.22
105670867--105670900
17
2.1
16
88
5
50
26
5
2
64
1.30
105672447--105672530
6
14.2
6
83
2
89
15
3
7
73
1.18
105672447--105672530
18
4.7
18
83
1
98
15
3
7
73
1.18
105672449--105672530
24
3.5
24
88
1
112
15
3
6
74
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105674347--105674404
30
1.9
30
83
13
75
27
32
25
13
1.94
105681509--105681601
33
2.8
33
80
0
96
44
18
19
18
1.88
105683883--105683930
21
2.3
21
85
0
60
16
27
29
27
1.97
105688943--105689034
44
2.1
44
87
4
132
20
21
23
33
1.97
105694549--105694593
23
1.9
24
82
13
58
71
2
11
15
1.24
105694549--105694596
24
2.0
24
84
8
62
70
2
10
16
1.24
105699247--105699283
12
3.1
12
100
0
74
43
32
8
16
1.77
105708955--105709012
31
1.9
30
89
10
91
17
12
8
62
1.54
105709547--105709595
18
2.7
18
78
12
55
18
18
6
57
1.61
105716170--105716212
13
3.7
12
82
11
54
81
2
2
13
0.89
105728573--105728723
40
3.8
40
82
8
166
27
27
19
24
1.99
105736944--105737091
40
3.7
40
90
1
208
25
29
22
23
1.99
105770020--105770045
5
5.2
5
100
0
52
19
0
0
80
0.71
105776142--105776179
18
2.1
19
90
5
60
73
0
2
23
0.95
105783218--105783256
13
3.0
13
100
0
78
15
38
30
15
1.88
105786542--105786566
10
2.5
10
100
0
50
0
24
0
76
0.80
105787765--105787831
20
3.3
20
93
4
109
34
10
20
34
1.87
105787776--105787831
11
5.5
11
73
16
57
33
10
21
33
1.88
105787765--105787845
40
2.0
39
81
13
94
34
11
19
34
1.87
105787879--105787974
26
3.8
25
85
6
131
26
25
21
27
2.00
105788196--105788259
31
2.1
31
90
0
101
37
17
21
23
1.94
105791341--105791426
22
4.0
22
80
6
77
18
19
20
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105797208--105797330
43
2.9
42
80
7
149
24
15
24
35
1.94
105806068--105806174
42
2.5
43
84
1
144
26
17
23
32
1.97
105806027--105806185
43
3.7
43
76
9
155
25
16
25
32
1.97
105806500--105806529
10
3.0
10
95
0
51
23
20
36
20
1.95
105812520--105812707
51
3.7
51
90
3
258
28
28
7
35
1.84
105812520--105812707
101
1.9
100
85
3
261
28
28
7
35
1.84
105817653--105817775
61
2.0
61
85
3
167
43
11
16
29
1.83
105822319--105822488
43
4.0
42
76
9
139
23
16
26
33
1.96
105822327--105822488
42
3.8
42
76
9
125
24
16
26
32
1.96
105846745--105846834
44
2.0
44
84
0
117
36
11
4
47
1.59
105855072--105855166
40
2.4
40
82
3
113
37
33
12
15
1.86
105857347--105857423
29
2.7
29
87
0
109
28
28
16
25
1.97
105857647--105857689
8
5.4
8
81
10
52
6
20
20
51
1.71
105857647--105857689
16
2.7
16
88
0
68
6
20
20
51
1.71
105859276--105859316
18
2.2
19
83
12
50
14
39
26
19
1.90
105862657--105862683
14
1.9
14
100
0
54
29
7
0
62
1.22
105862845--105862971
3
41.7
3
69
14
57
29
7
3
60
1.38
105863019--105863044
3
8.7
3
100
0
52
34
0
0
65
0.93
105884289--105884629
40
8.8
40
91
4
511
23
27
21
27
1.99
105890445--105890492
24
2.0
24
96
4
89
43
4
8
43
1.53
105912362--105912398
19
2.0
19
89
5
58
72
0
8
18
1.08
105929849--105929908
29
2.1
29
96
0
111
20
21
35
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105935910--105935971
26
2.3
27
83
10
83
37
25
8
29
1.85
105936077--105936182
27
3.9
26
85
4
131
21
24
18
34
1.96
105936075--105936189
55
2.1
54
87
7
171
20
23
20
35
1.96
105938172--105938410
114
2.1
114
95
0
424
34
21
13
30
1.92
105942071--105942141
28
2.5
28
88
0
115
30
25
8
35
1.86
105942185--105942262
40
2.0
40
86
0
111
37
25
12
24
1.91
105959983--105960042
23
2.6
23
86
0
84
45
3
21
30
1.68
105961555--105961831
27
10.3
27
88
0
376
24
21
19
34
1.96
105969447--105969571
25
5.1
24
76
4
99
22
31
16
30
1.95
105970004--105970032
14
2.0
15
93
6
51
27
0
20
51
1.47
105973513--105973556
22
2.0
22
100
0
88
22
4
18
54
1.61
105978995--105979042
21
2.3
21
85
7
62
33
18
25
22
1.97
105985531--105985559
14
2.1
14
100
0
58
34
34
0
31
1.58
105987478--105987587
54
2.0
54
98
0
211
40
20
14
23
1.90
105989885--105989918
17
2.0
17
88
11
52
26
8
0
64
1.22
105989900--105989974
14
5.3
14
72
12
55
32
4
0
64
1.12
105989950--105989979
12
2.6
11
90
10
51
26
3
0
70
1.03
105989969--105990008
21
2.0
21
85
5
55
35
2
5
57
1.34
105990324--105990364
18
2.3
18
95
0
73
31
9
0
58
1.31
105990399--105990445
22
2.0
22
84
15
60
25
2
2
70
1.10
105990472--105990532
21
2.8
22
79
16
65
29
4
0
65
1.13
105992175--105992283
57
1.9
56
87
5
157
10
55
1
32
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105996133--105996204
32
2.3
32
95
2
128
25
29
5
40
1.78
106000750--106000824
39
2.0
36
92
7
123
57
2
13
26
1.50
106001529--106001578
10
5.0
10
83
9
66
70
0
6
24
1.10
106003299--106003334
18
1.9
19
88
5
56
58
0
8
33
1.28
106004741--106005019
139
2.0
139
91
1
452
25
18
18
37
1.94
106006492--106006553
10
6.3
10
75
7
56
61
9
3
25
1.42
106006480--106006552
39
2.0
36
86
10
103
61
9
2
26
1.40
106006704--106006745
16
2.7
16
77
3
50
23
28
9
38
1.86
106009652--106009706
14
3.6
14
75
17
56
47
1
1
49
1.23
106009742--106009789
19
2.5
19
82
3
60
39
0
4
56
1.19
106016611--106016641
3
10.3
3
100
0
62
64
0
0
35
0.94
106023412--106023450
20
1.9
21
84
5
53
66
2
2
28
1.18
106026549--106026592
19
2.3
19
92
0
70
36
13
2
47
1.56
106033586--106033654
34
2.0
35
97
2
131
36
28
11
23
1.90
106035077--106035294
40
5.5
40
89
2
298
22
23
28
25
1.99
106055081--106055111
8
3.9
8
100
0
62
38
0
0
61
0.96
106055867--106055919
26
2.0
26
100
0
106
26
0
22
50
1.49
106060787--106060832
20
2.3
20
100
0
92
32
10
6
50
1.63
106062831--106062919
34
2.6
34
89
0
142
35
7
16
39
1.78
106065015--106065082
18
3.9
17
78
14
61
64
0
26
8
1.22
106069081--106069254
46
3.8
45
80
17
196
27
20
29
22
1.98
106069084--106069349
47
5.7
46
79
11
256
27
19
30
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106069084--106069349
140
1.9
141
84
6
362
27
19
30
22
1.98
106076759--106077024
47
5.7
46
79
9
254
28
19
29
22
1.98
106076759--106077024
140
1.9
141
85
6
371
28
19
29
22
1.98
106086992--106087032
21
2.0
21
85
4
57
24
9
24
41
1.85
106092972--106093178
68
3.0
68
80
4
238
23
21
16
37
1.93
106094277--106094656
188
2.0
188
98
0
733
30
23
12
33
1.91
106097946--106098020
20
3.6
21
76
16
68
38
4
4
53
1.39
106103428--106103477
13
3.2
16
70
18
52
48
0
2
50
1.12
106106230--106106311
29
2.8
30
80
10
89
60
2
0
36
1.10
106108400--106108575
46
3.8
46
79
12
207
21
21
28
28
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373