Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  322  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108201588--108201628
20
2.1
20
86
4
57
60
0
4
34
1.18
108201952--108202013
26
2.3
25
76
15
61
30
6
0
62
1.20
108202810--108202850
21
2.0
21
90
0
64
43
9
0
46
1.36
108209757--108209917
35
4.5
35
84
7
180
32
23
11
32
1.90
108209757--108209917
75
2.2
70
83
7
189
32
23
11
32
1.90
108215004--108215131
42
3.1
42
85
6
163
28
25
14
31
1.95
108215090--108215210
47
2.6
46
88
1
161
30
24
16
28
1.97
108215237--108215416
31
5.8
31
87
2
245
25
27
19
27
1.99
108215237--108215416
93
1.9
93
89
2
281
25
27
19
27
1.99
108215400--108215520
50
2.4
51
88
2
181
24
21
15
38
1.93
108216198--108216281
42
2.0
42
100
0
168
33
11
11
42
1.78
108221790--108221890
46
2.2
46
84
5
134
47
2
6
42
1.45
108232942--108232988
21
2.2
22
92
3
78
21
19
38
21
1.94
108235355--108235399
20
2.1
21
84
8
56
57
4
0
37
1.19
108239414--108239477
11
5.8
11
72
20
53
67
4
1
26
1.19
108240479--108240508
15
2.0
15
93
0
51
30
0
0
70
0.88
108241557--108241587
12
2.5
12
94
5
53
83
0
9
6
0.79
108245212--108245243
16
1.9
17
93
6
57
50
0
0
50
1.00
108245224--108245291
19
3.2
21
76
18
70
39
0
2
57
1.14
108248004--108248036
17
1.9
17
93
0
57
3
12
0
84
0.72
108249534--108249564
15
2.1
15
93
0
53
29
0
0
70
0.87
108249550--108249623
30
2.4
32
81
6
89
45
0
0
54
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108256835--108257032
97
2.0
98
82
4
240
22
20
11
45
1.83
108262348--108262391
18
2.6
17
86
13
65
68
0
0
31
0.90
108262591--108262620
14
2.1
14
100
0
60
26
13
13
46
1.80
108263901--108263940
9
4.4
9
80
0
53
27
2
0
70
1.01
108267257--108267376
51
2.4
51
91
2
197
32
15
24
28
1.95
108267352--108267377
7
3.7
7
100
0
52
42
11
30
15
1.82
108273567--108273651
37
2.3
35
80
11
100
29
2
2
65
1.17
108274166--108274212
22
2.1
22
88
0
76
61
6
0
31
1.21
108283863--108283949
39
2.2
39
95
0
156
41
26
9
22
1.84
108285912--108285993
30
2.8
28
80
8
92
30
2
3
63
1.24
108286850--108286889
18
2.3
19
87
12
59
62
0
0
37
0.95
108287208--108287252
22
2.0
22
95
0
81
22
15
26
35
1.94
108292259--108292309
16
3.2
15
78
15
50
68
1
0
29
1.00
108292281--108292344
24
2.6
26
78
7
71
59
3
0
37
1.13
108295893--108295927
17
2.1
17
88
0
52
85
2
11
0
0.69
108300049--108300092
21
2.1
21
100
0
88
36
0
27
36
1.57
108302681--108302716
13
2.8
14
84
16
51
27
25
0
47
1.52
108302668--108302708
18
2.2
19
87
12
59
29
24
0
46
1.53
108302831--108302965
39
3.4
38
73
8
101
28
28
18
24
1.98
108303205--108303243
18
2.1
19
90
4
62
48
10
0
41
1.37
108304557--108304609
5
10.0
5
80
11
61
54
3
0
41
1.18
108304556--108304611
12
4.5
12
77
16
60
53
3
0
42
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108309413--108309446
17
1.9
18
94
5
61
14
26
41
17
1.88
108312662--108312715
19
2.6
21
77
17
58
31
1
11
55
1.45
108320562--108320624
23
2.8
22
85
4
72
28
22
30
19
1.98
108340895--108340929
5
6.6
5
90
9
52
60
0
0
40
0.97
108341492--108342584
545
2.0
545
99
0
2177
30
17
21
29
1.96
108343481--108343505
3
8.3
3
100
0
50
32
0
36
32
1.58
108344317--108344361
19
2.3
20
96
3
83
28
11
11
48
1.73
108344438--108344480
18
2.4
18
96
0
77
46
2
0
51
1.13
108351729--108351779
24
2.1
24
92
0
84
39
37
3
19
1.70
108351786--108351839
26
2.1
26
96
0
99
35
9
12
42
1.75
108354710--108354824
41
2.8
41
94
2
196
26
20
24
29
1.99
108357016--108357069
26
2.1
26
96
0
99
35
12
12
38
1.82
108357506--108357531
6
4.3
6
100
0
52
15
15
69
0
1.20
108373484--108373512
4
7.2
4
100
0
58
51
0
0
48
1.00
108378033--108378076
21
2.1
21
82
0
52
34
25
2
38
1.68
108378231--108378317
18
4.8
18
68
22
58
32
1
3
63
1.19
108378251--108378331
19
4.5
19
70
14
55
32
2
2
62
1.21
108378268--108378343
19
4.2
19
66
24
56
34
1
2
61
1.18
108378234--108378343
53
2.1
53
96
0
202
33
1
2
61
1.20
108380108--108380159
21
2.5
21
78
12
70
38
46
13
1
1.54
108383339--108383835
126
4.0
126
82
2
558
29
16
15
38
1.90
108383897--108383969
30
2.5
30
80
10
89
39
20
1
38
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108383892--108383969
28
2.7
28
78
9
86
39
20
2
37
1.66
108383979--108384011
7
4.7
7
96
0
57
54
33
0
12
1.37
108384007--108384051
18
2.6
18
92
3
74
46
17
0
35
1.49
108384013--108384087
27
2.8
28
71
17
77
46
14
0
38
1.45
108384904--108384929
12
2.2
12
100
0
52
61
7
15
15
1.55
108385381--108385438
13
4.7
12
83
12
73
72
10
1
15
1.19
108386744--108386799
22
2.6
21
72
8
58
17
3
33
44
1.66
108387795--108387839
23
1.9
24
90
4
74
37
0
2
60
1.09
108395925--108396033
3
36.3
3
100
0
218
0
33
0
66
0.92
108397493--108397548
25
2.2
25
87
0
76
55
8
3
32
1.48
108397503--108397554
25
2.2
25
86
6
72
55
9
1
32
1.43
108400902--108400945
23
1.9
23
90
0
70
56
11
0
31
1.35
108402037--108402076
20
2.0
20
95
0
71
12
30
20
37
1.89
108411288--108411319
2
16.0
2
100
0
64
50
0
50
0
1.00
108412199--108412265
31
2.2
29
89
5
98
43
2
1
52
1.25
108413381--108413411
3
10.3
3
92
0
53
67
3
0
29
1.06
108417015--108417055
21
2.0
21
90
9
66
19
31
21
26
1.97
108423764--108423826
28
2.3
28
78
8
76
41
3
3
52
1.33
108424860--108424889
14
2.1
14
93
0
51
13
23
6
56
1.60
108425365--108425404
6
6.7
6
85
0
53
85
10
5
0
0.75
108425371--108425410
12
3.3
12
92
0
62
80
10
10
0
0.92
108425366--108425415
17
2.9
17
82
5
55
82
8
10
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108427670--108427694
6
4.2
6
100
0
50
68
0
0
32
0.90
108436554--108436589
18
2.0
18
94
0
63
22
0
36
41
1.54
108441820--108441878
29
2.0
29
100
0
118
42
0
10
47
1.37
108443455--108443519
21
3.1
21
86
0
85
35
26
23
15
1.94
108451231--108451313
21
3.9
21
77
3
67
37
25
21
15
1.93
108451229--108451303
21
3.5
22
81
7
82
38
25
21
14
1.91
108453630--108453667
20
1.9
20
89
10
60
47
13
15
23
1.81
108456189--108456229
12
3.4
12
93
0
55
65
9
2
21
1.34
108456199--108456233
3
11.7
3
87
0
52
65
5
0
28
1.15
108456257--108456307
17
3.3
17
71
25
58
72
0
5
21
1.05
108456262--108456325
25
2.5
25
84
5
83
71
3
4
20
1.17
108456415--108456470
3
18.7
3
100
0
112
33
0
32
33
1.58
108457399--108457439
13
3.2
13
79
6
57
17
19
51
12
1.76
108458770--108458854
10
7.9
10
69
19
55
4
22
1
71
1.11
108458826--108458863
20
1.9
20
89
10
60
10
15
0
73
1.09
108467705--108467734
14
2.1
14
100
0
60
10
26
13
50
1.73
108470375--108470406
14
2.4
14
90
10
50
21
9
28
40
1.84
108470430--108470563
49
2.7
49
87
1
196
24
16
28
30
1.96
108470374--108470563
50
3.8
50
81
2
202
24
14
27
33
1.94
108470764--108470793
16
1.9
15
93
6
51
43
0
23
33
1.54
108475996--108476059
32
2.0
32
100
0
128
15
25
15
43
1.86
108476731--108476771
9
4.6
9
93
0
64
24
9
24
41
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108477530--108477573
23
1.9
23
95
0
79
13
31
27
27
1.94
108478347--108478380
16
2.1
17
94
5
61
64
0
11
23
1.26
108479298--108479348
16
3.2
16
97
0
93
21
11
13
52
1.72
108480319--108480357
11
3.4
12
82
13
55
69
0
10
20
1.17
108487625--108487657
12
2.8
12
100
0
66
30
24
0
45
1.53
108496046--108496082
13
2.8
13
91
4
56
51
21
0
27
1.48
108498814--108499311
47
10.5
47
94
2
834
32
8
29
29
1.87
108498814--108499311
96
5.2
96
94
2
855
32
8
29
29
1.87
108499430--108499567
37
3.7
37
97
0
249
24
18
31
25
1.98
108501405--108501445
21
1.9
22
85
5
57
39
17
2
41
1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373