genome.fa.s8.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  125  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41019791--41019836	25	1.9	24	82	8	58	28	21	23	26	1.99
41019957--41020048	42	2.2	42	86	0	121	29	14	22	33	1.93
41022385--41022476	27	3.4	27	89	0	130	30	19	6	43	1.76
41022508--41022631	27	4.6	27	76	7	119	41	22	8	27	1.82
41022528--41022688	54	2.9	54	80	4	144	40	19	8	31	1.82
41022587--41022694	27	3.9	27	77	13	103	41	18	8	31	1.80
41023563--41023632	25	2.8	26	84	4	90	25	28	22	22	1.99
41026749--41027011	40	6.6	40	87	3	316	27	27	20	24	1.99
41034695--41034950	40	6.4	40	88	3	320	27	27	19	25	1.99
41040683--41040741	28	2.1	28	96	0	109	20	20	18	40	1.91
41050957--41051000	22	2.0	22	86	0	61	52	18	15	13	1.75
41053935--41054067	46	2.8	48	76	13	150	28	24	20	26	1.99
41058546--41058653	54	2.0	54	98	0	207	37	8	25	28	1.85
41059139--41059185	20	2.3	20	81	0	58	29	34	12	23	1.92
41060714--41060749	10	3.8	9	92	7	54	88	2	8	0	0.59
41060714--41060750	9	3.7	10	89	10	58	89	2	8	0	0.58
41060722--41060754	12	2.8	12	90	4	50	87	3	9	0	0.63
41060696--41060761	21	2.8	24	75	17	66	78	3	15	3	0.99
41063589--41063627	20	2.0	20	84	0	51	30	38	12	17	1.88
41068915--41068965	22	2.3	22	80	6	59	23	11	27	37	1.90
41080820--41080868	25	2.0	25	91	0	80	34	22	14	28	1.93
41080998--41081068	25	2.8	25	91	2	106	26	25	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41081008--41081081	25	2.9	26	81	15	84	27	24	21	27	1.99
41084586--41084664	37	2.1	37	86	4	106	26	30	17	25	1.97
41084783--41085228	47	9.4	47	93	2	741	28	29	8	32	1.88
41084783--41085228	143	3.1	143	95	1	763	28	29	8	32	1.88
41088417--41088588	43	4.0	42	77	5	148	29	15	22	32	1.95
41091981--41092056	20	3.8	20	76	11	77	42	15	9	32	1.79
41098501--41098730	55	4.3	54	81	8	260	23	24	16	35	1.95
41098521--41098723	108	1.9	110	87	4	304	24	25	17	33	1.96
41117270--41117423	28	5.5	28	96	0	265	25	12	28	33	1.92
41117245--41117423	56	3.2	55	91	1	268	25	12	28	33	1.92
41125518--41125671	28	5.5	28	95	0	256	26	12	27	33	1.92
41125493--41125671	56	3.2	55	89	1	259	26	12	27	33	1.92
41125493--41125671	84	2.1	83	89	4	270	26	12	27	33	1.92
41125493--41125671	28	6.4	28	88	3	209	26	12	27	33	1.92
41129125--41129302	27	6.6	27	78	3	142	27	28	15	28	1.96
41137117--41137294	27	6.6	27	79	3	151	27	29	15	27	1.96
41137143--41137293	82	1.9	81	85	4	214	27	29	16	27	1.97
41163397--41163596	27	7.4	27	85	2	215	35	17	21	26	1.95
41163397--41163596	54	3.7	54	85	2	240	35	17	21	26	1.95
41163398--41163596	81	2.5	80	87	3	272	35	17	21	26	1.95
41164248--41164298	27	1.9	26	84	4	66	19	27	17	35	1.94
41165589--41165663	19	3.9	19	81	11	100	54	21	0	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41165589--41165663	9	7.9	9	84	10	96	54	21	0	24	1.45
41165675--41165771	34	2.9	34	92	3	153	42	18	7	31	1.78
41179606--41179797	40	4.8	40	92	1	226	27	27	21	23	1.99
41179577--41179796	80	2.8	80	81	4	248	28	27	20	23	1.99
41192992--41193048	11	5.0	11	77	12	53	22	3	0	73	0.98
41195135--41195188	24	2.2	24	84	12	67	29	38	16	14	1.89
41197640--41197681	5	8.6	5	87	12	61	16	0	0	83	0.65
41207657--41207714	3	19.0	3	85	3	53	36	8	0	55	1.31
41208053--41208083	15	2.1	15	100	0	62	35	0	0	64	0.94
41210695--41210745	16	3.1	16	76	15	50	64	0	23	11	1.26
41210696--41210733	17	2.2	18	90	4	60	73	0	15	10	1.09
41210719--41210776	21	2.8	20	79	7	62	62	1	29	6	1.31
41210695--41210768	33	2.1	36	82	9	91	63	1	25	9	1.33
41214518--41214703	80	2.3	80	84	9	238	28	27	20	23	1.99
41214520--41214703	40	4.6	40	83	7	214	28	27	21	23	1.99
41217049--41217268	40	5.6	40	83	4	259	25	26	23	24	2.00
41219307--41219423	59	2.0	59	94	0	207	27	12	10	49	1.73
41221880--41222049	46	3.7	45	76	7	171	21	31	18	28	1.97
41225120--41225374	55	4.8	53	80	8	254	35	16	25	23	1.95
41225127--41225327	108	1.8	110	89	4	318	33	16	25	24	1.96
41225567--41225597	16	1.9	16	93	0	53	41	0	22	35	1.54
41227107--41227220	26	4.4	26	80	0	111	23	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41236542--41236599	27	2.1	27	90	0	89	41	15	3	39	1.64
41238109--41238195	41	2.1	41	87	4	122	21	27	16	34	1.95
41241747--41241815	33	2.1	33	94	0	120	31	17	20	30	1.95
41251468--41251524	27	2.0	28	90	6	89	38	5	14	42	1.68
41254855--41254900	15	3.1	15	90	0	65	17	13	15	54	1.71
41261847--41261970	63	2.0	63	88	0	185	32	21	18	27	1.97
41271973--41272051	37	2.1	37	90	0	122	25	31	18	24	1.98
41272169--41272440	47	5.7	47	94	3	463	30	29	8	31	1.88
41272302--41272380	25	3.3	25	64	10	74	34	27	5	32	1.79
41277095--41277136	21	2.0	21	100	0	84	19	23	23	33	1.97
41284954--41285065	40	2.8	40	76	13	104	31	18	22	27	1.97
41287838--41287906	30	2.3	30	92	0	111	24	31	23	20	1.98
41291540--41291579	21	2.0	21	85	5	55	12	37	27	22	1.90
41304358--41304789	171	2.6	166	84	5	532	37	8	17	36	1.80
41304332--41304871	165	3.2	169	81	7	609	36	8	18	36	1.82
41314415--41314674	40	6.6	40	90	2	366	22	26	23	26	2.00
41322548--41322731	37	4.9	38	86	7	252	23	27	20	27	1.99
41322524--41322731	74	2.8	75	83	8	273	23	27	21	27	1.99
41338638--41338815	27	6.6	27	85	3	214	30	28	14	26	1.95
41338659--41338814	82	1.9	81	89	3	242	30	28	14	26	1.95
41344027--41344246	47	4.7	45	79	10	187	21	30	20	27	1.98
41349119--41349164	18	2.6	18	89	3	67	15	4	19	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41356431--41356471	21	2.0	20	85	4	55	46	26	0	26	1.53
41374008--41374114	53	2.0	53	83	3	135	35	12	26	26	1.91
41374263--41374447	28	6.5	28	68	20	82	33	16	22	27	1.95
41374386--41374447	28	2.2	28	91	0	97	32	14	24	29	1.94
41374731--41374775	23	2.0	23	100	0	90	55	8	17	17	1.67
41376691--41376834	27	5.2	28	78	10	113	29	17	13	39	1.87
41376718--41376887	27	6.3	27	80	1	160	30	17	14	37	1.90
41377250--41377275	13	2.0	13	100	0	52	30	0	7	61	1.24
41378649--41378814	40	4.2	40	92	2	237	22	23	27	26	2.00
41381791--41381905	61	1.9	61	98	0	221	27	16	4	51	1.63
41388212--41388943	47	15.6	47	90	4	1140	29	29	7	33	1.85
41388386--41388943	96	5.9	94	94	1	909	29	28	7	33	1.85
41388386--41388943	143	3.9	142	93	1	913	29	28	7	33	1.85
41395095--41395143	21	2.3	22	79	10	57	32	2	24	40	1.67
41395713--41395871	43	3.7	43	76	5	160	27	16	23	32	1.96
41397207--41397249	17	2.5	17	96	0	77	18	39	34	6	1.78
41400919--41401085	8	21.5	8	65	16	50	58	0	6	34	1.28
41402864--41403412	206	2.7	206	88	2	798	28	20	18	32	1.97
41404300--41404375	1	76.0	1	89	0	116	1	1	2	94	0.38
41415294--41415337	22	2.0	22	83	12	56	56	6	6	29	1.51
41415641--41415698	24	2.5	22	81	13	62	63	0	5	31	1.16
41415635--41415698	23	2.7	22	80	17	67	62	0	6	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420875--41420975	49	2.1	49	96	0	184	29	11	23	34	1.91
41427351--41427536	27	6.9	27	86	2	230	29	24	8	37	1.84
41427353--41427536	54	3.4	54	88	1	262	29	25	7	38	1.83
41427344--41427536	81	2.4	81	86	1	262	29	23	8	38	1.85
41427564--41427637	27	2.7	27	83	4	96	40	18	5	35	1.74
41427507--41427637	54	2.5	52	76	8	129	35	19	9	35	1.85
41427622--41427842	27	8.3	27	88	1	302	32	19	22	25	1.97
41427541--41427842	54	5.6	54	83	5	294	34	18	18	28	1.95
41427540--41427816	81	3.4	81	82	2	281	34	19	17	28	1.94
41428271--41428339	22	3.1	21	80	10	75	20	23	21	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373