Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  157  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52263084--52263116
13
2.6
13
90
4
50
39
0
12
48
1.40
52268448--52268540
5
17.8
5
73
22
68
19
3
1
76
0.99
52268453--52268520
6
11.2
6
76
9
66
16
4
1
77
0.99
52268447--52268521
16
4.6
16
79
15
73
17
4
1
77
0.99
52277205--52277237
13
2.6
13
90
4
50
48
12
0
39
1.40
52288646--52289020
47
8.0
47
89
0
563
32
12
29
26
1.93
52288834--52288913
25
3.3
25
66
22
71
31
10
28
30
1.89
52288646--52289020
94
4.0
94
92
0
633
32
12
29
26
1.93
52289191--52289334
37
3.9
37
89
0
207
22
20
30
26
1.98
52292668--52292843
46
3.8
46
78
10
205
22
21
28
28
1.99
52292665--52292835
93
1.8
93
92
0
288
22
21
28
27
1.99
52295769--52295824
15
3.7
15
88
7
87
12
16
10
60
1.58
52297757--52297928
46
3.7
46
76
11
172
22
19
28
29
1.98
52297750--52297921
93
1.8
93
88
2
265
22
20
27
28
1.99
52300912--52300964
25
2.2
24
83
10
63
39
22
22
15
1.91
52318864--52319015
27
5.6
27
93
3
241
30
28
13
26
1.94
52318864--52319015
55
2.8
55
94
0
259
30
28
13
26
1.94
52326910--52327061
27
5.6
27
93
3
241
30
28
13
26
1.94
52326910--52327061
55
2.8
55
94
0
259
30
28
13
26
1.94
52330084--52330110
12
2.2
12
100
0
54
7
14
37
40
1.74
52331044--52331140
30
3.2
30
75
5
99
27
28
16
26
1.97
52332593--52332654
28
2.2
28
100
0
124
40
19
3
37
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52344714--52344822
53
2.1
53
92
0
182
33
24
13
28
1.94
52364686--52364816
49
2.7
49
77
7
131
22
24
21
32
1.98
52371515--52371777
40
6.6
40
88
3
325
24
20
27
26
1.99
52371554--52371812
80
3.3
80
85
3
256
25
20
27
25
1.99
52379466--52379728
40
6.6
40
88
3
325
24
20
27
26
1.99
52379505--52379763
80
3.3
80
85
3
256
25
20
27
25
1.99
52382459--52382513
27
2.0
27
100
0
110
18
18
14
49
1.80
52403483--52403654
46
3.7
46
84
2
200
29
23
16
29
1.97
52406658--52406696
18
2.2
18
86
9
53
17
0
12
69
1.19
52407419--52407572
68
2.3
68
83
0
191
25
26
21
26
1.99
52409337--52409368
2
16.0
2
100
0
64
0
50
0
50
1.00
52413860--52413919
28
2.1
28
87
6
86
55
0
1
43
1.10
52413986--52414046
20
3.1
20
76
4
70
59
0
8
32
1.27
52414253--52414319
21
3.2
21
76
14
75
32
1
0
65
1.02
52414251--52414330
21
3.7
22
73
15
69
31
1
1
66
1.08
52414737--52414761
5
5.0
5
100
0
50
20
0
0
80
0.72
52416590--52416810
90
2.5
86
79
7
228
36
9
17
35
1.83
52417298--52417343
17
2.7
18
83
10
69
36
0
0
63
0.95
52417813--52417851
17
2.2
19
86
9
55
25
2
2
69
1.14
52425268--52425456
40
4.8
40
93
0
299
31
20
25
22
1.98
52427659--52427687
2
15.0
2
92
7
51
0
51
0
48
1.00
52432080--52432156
28
2.8
26
81
13
75
57
1
3
37
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52432223--52432284
20
3.1
20
74
6
63
59
0
8
32
1.26
52432488--52432553
20
3.3
20
76
14
73
34
1
0
63
1.04
52432495--52432564
20
3.5
21
75
14
58
32
1
1
64
1.11
52434814--52435033
89
2.5
86
77
10
230
36
10
17
35
1.84
52436035--52436073
17
2.2
19
86
9
55
25
2
2
69
1.14
52443546--52443733
40
4.7
40
93
0
304
31
20
26
21
1.98
52445992--52446021
2
15.0
2
100
0
60
0
50
0
50
1.00
52450507--52450566
28
2.1
28
85
11
79
56
0
1
41
1.09
52450632--52450693
20
3.1
20
74
6
63
59
0
8
32
1.26
52450899--52450954
21
2.7
19
79
15
58
33
1
0
64
1.04
52450917--52450961
20
2.3
19
84
7
54
40
0
0
60
0.97
52453935--52453981
17
2.7
18
78
15
62
38
0
0
61
0.96
52453948--52453988
20
2.1
19
86
13
57
41
2
0
56
1.13
52454449--52454487
17
2.2
19
86
9
55
25
2
2
69
1.14
52461971--52462158
40
4.7
40
93
0
304
31
20
26
21
1.98
52464416--52464445
2
15.0
2
100
0
60
0
50
0
50
1.00
52468914--52468970
27
2.2
26
83
3
69
54
0
1
43
1.10
52469026--52469095
19
3.6
19
72
11
61
55
1
8
34
1.39
52469305--52469359
19
2.8
19
74
20
60
34
1
0
63
1.05
52469325--52469371
19
2.5
20
79
10
53
29
0
2
68
1.02
52469298--52469385
17
4.8
17
71
20
54
29
1
1
68
1.04
52471608--52471825
89
2.5
84
78
10
233
36
10
17
35
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52472276--52472320
23
2.0
23
82
8
56
37
6
0
55
1.26
52472309--52472355
17
2.7
18
78
15
62
38
0
0
61
0.96
52472322--52472362
20
2.1
19
86
13
57
41
2
0
56
1.13
52472823--52472861
17
2.2
19
86
9
55
25
2
2
69
1.14
52480332--52480519
40
4.7
40
95
0
322
30
20
26
21
1.98
52488965--52489152
40
4.7
40
95
0
313
30
20
27
21
1.98
52491578--52491728
75
2.0
75
90
2
241
48
7
11
31
1.69
52491704--52492260
138
4.0
138
90
2
850
40
8
5
45
1.59
52491704--52492260
277
2.0
276
91
1
900
40
8
5
45
1.59
52493607--52493657
26
2.0
26
88
0
75
66
1
5
25
1.24
52496941--52497006
32
2.1
32
97
0
123
33
22
9
34
1.86
52499667--52499745
28
2.8
28
88
0
122
34
11
24
30
1.90
52505642--52505676
16
2.3
15
90
5
52
28
5
2
62
1.32
52514360--52514406
18
2.6
18
76
6
51
19
8
0
72
1.10
52516293--52516331
21
1.9
20
84
5
51
53
12
30
2
1.52
52517858--52517935
39
2.0
39
100
0
156
30
10
23
35
1.88
52519406--52519515
28
4.0
28
83
4
118
32
13
26
27
1.94
52523120--52523307
40
4.8
40
90
6
253
23
22
27
26
2.00
52523120--52523307
78
2.4
79
88
7
267
23
22
27
26
2.00
52531031--52531232
40
5.1
40
89
6
247
25
22
26
25
2.00
52531031--52531232
78
2.6
78
86
8
259
25
22
26
25
2.00
52535133--52535316
67
2.8
64
79
8
203
29
17
29
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52535109--52535262
67
2.3
64
83
7
182
33
17
28
20
1.96
52538500--52538549
19
2.7
19
80
14
52
70
0
24
6
1.10
52538516--52538563
20
2.4
21
82
10
64
62
0
29
8
1.24
52538523--52538569
19
2.5
20
86
6
62
61
0
29
8
1.25
52545185--52545324
37
3.8
37
91
0
226
25
30
19
25
1.98
52545497--52545948
48
9.4
48
97
0
823
29
27
8
34
1.86
52550505--52550577
35
2.1
35
100
0
146
35
5
19
39
1.75
52552336--52552451
40
2.9
39
79
3
106
27
18
6
48
1.71
52552417--52552468
13
3.9
13
76
2
50
38
25
0
36
1.56
52552423--52552472
26
1.9
26
91
0
82
38
26
0
36
1.57
52555641--52555678
18
2.1
18
100
0
76
26
10
15
47
1.78
52564658--52564702
15
3.0
15
90
0
72
13
17
13
55
1.69
52567818--52568121
150
2.0
150
95
0
545
32
9
27
30
1.88
52569603--52569645
21
2.0
21
95
0
77
34
11
27
25
1.91
52582408--52582452
16
2.8
16
86
3
54
68
4
11
15
1.34
52584279--52584434
78
2.0
78
87
2
224
21
24
30
23
1.99
52584279--52584400
39
3.1
39
96
0
226
22
23
31
22
1.99
52596166--52596211
23
2.0
23
95
0
83
26
15
17
41
1.88
52600915--52600953
20
2.1
19
85
9
53
48
5
5
41
1.47
52607992--52608320
48
6.9
48
75
5
281
27
19
27
24
1.99
52607992--52608317
93
3.4
97
85
6
425
27
19
28
24
1.99
52611767--52611819
24
2.2
24
93
0
88
15
9
18
56
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52611774--52611827
24
2.2
24
96
0
99
12
9
18
59
1.60
52612127--52612196
20
3.6
19
79
9
70
55
8
1
34
1.39
52612348--52612378
16
1.9
16
93
0
53
35
6
9
48
1.62
52612440--52612498
21
3.0
20
76
11
59
32
22
5
40
1.75
52615159--52615732
291
2.0
291
96
0
1069
40
10
11
37
1.75
52632464--52632509
22
2.1
21
84
8
56
65
4
4
26
1.30
52636273--52636312
19
2.2
18
90
4
62
42
17
2
37
1.63
52647738--52647806
25
2.7
25
80
10
77
15
8
8
66
1.43
52655834--52655908
20
3.7
20
75
7
78
25
13
26
34
1.93
52666964--52667008
11
3.9
11
80
11
54
33
2
0
64
1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373