genome.fa.s8.2.7.7.80.10.50.1000.314.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  314  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106108397--106108568	93	1.8	93	94	0	308	21	21	29	27	1.99
106118841--106119026	40	4.7	40	87	5	227	25	26	22	25	2.00
106126910--106126996	42	2.1	42	95	0	156	39	25	12	22	1.90
106148136--106148301	35	4.6	37	78	10	164	32	10	22	33	1.89
106148136--106148306	75	2.4	75	82	7	194	32	11	22	33	1.89
106155613--106155778	35	4.6	35	80	10	174	32	9	24	34	1.86
106155613--106155783	75	2.4	75	83	9	205	32	9	23	34	1.87
106157158--106157209	27	1.9	27	88	7	79	21	3	0	75	0.97
106161897--106162015	60	2.0	59	82	9	143	28	21	22	27	1.99
106164088--106164158	18	3.9	18	71	14	65	36	15	5	42	1.71
106165182--106165238	23	2.5	23	83	11	64	56	3	0	40	1.17
106169108--106169207	50	2.0	50	98	0	191	34	19	24	23	1.97
106175346--106175498	49	3.1	49	86	7	236	45	12	9	32	1.74
106177452--106177505	27	2.0	27	100	0	108	37	14	14	33	1.88
106180087--106180247	78	2.1	78	92	0	268	36	12	31	19	1.89
106181141--106181407	47	5.7	48	73	13	182	26	19	29	23	1.98
106183890--106183929	21	2.0	20	90	5	62	12	37	30	20	1.89
106190571--106190606	16	2.2	16	100	0	72	41	22	13	22	1.89
106192800--106192927	43	3.0	43	78	15	138	23	19	27	29	1.98
106193295--106193332	19	2.0	20	84	5	51	36	5	13	44	1.66
106211598--106211635	17	2.2	17	90	0	58	26	26	28	18	1.98
106215480--106215619	60	2.3	60	85	8	187	28	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106215480--106215580	28	3.4	29	72	19	93	27	24	18	28	1.98
106215609--106215654	20	2.3	20	85	3	67	28	32	17	21	1.96
106215952--106216015	26	2.4	26	79	10	67	28	15	25	31	1.96
106216264--106216295	8	4.0	8	95	0	55	3	25	21	50	1.64
106218164--106218188	3	8.3	3	100	0	50	64	0	0	36	0.94
106218503--106218605	41	2.5	41	80	1	116	25	14	20	39	1.90
106222735--106222850	30	3.7	30	71	10	88	31	25	14	29	1.95
106227934--106228101	43	3.9	44	79	6	175	26	13	25	33	1.93
106231000--106231060	32	1.9	32	83	6	79	44	11	3	40	1.57
106231851--106231885	17	2.0	18	94	5	63	71	11	0	17	1.14
106232633--106232665	17	1.9	17	88	11	50	15	0	18	66	1.25
106233364--106233526	43	3.8	43	79	5	170	28	15	25	30	1.96
106233364--106233526	86	1.9	84	82	6	202	28	15	25	30	1.96
106246542--106246604	31	2.0	31	96	0	117	3	23	6	66	1.29
106261759--106261899	40	3.5	40	91	0	219	24	26	24	24	2.00
106266437--106266484	23	2.1	23	100	0	96	37	16	8	37	1.79
106267063--106267102	21	1.9	21	94	0	71	17	25	15	42	1.88
106277003--106277034	15	2.1	15	100	0	64	31	18	28	21	1.97
106286206--106286573	182	2.0	181	93	1	630	26	14	18	39	1.90
106288549--106288615	34	2.0	34	96	0	125	38	2	26	31	1.72
106289829--106289878	24	2.1	24	96	0	91	12	34	16	38	1.85
106289865--106289923	24	2.6	22	77	12	66	22	33	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106289943--106289985	9	4.8	9	91	0	68	32	32	23	11	1.90
106290064--106290091	2	14.0	2	100	0	56	50	50	0	0	1.00
106290227--106290288	33	2.0	30	84	9	79	20	17	40	20	1.92
106292468--106292537	36	1.9	36	88	0	104	42	20	11	25	1.85
106292607--106292638	14	2.3	14	100	0	64	6	15	46	31	1.71
106297593--106297662	36	1.9	36	88	0	104	42	20	11	25	1.85
106297732--106297777	14	3.3	14	100	0	92	6	15	45	32	1.71
106298443--106298532	44	2.0	44	87	8	128	31	2	24	42	1.67
106311391--106311543	47	3.2	47	84	2	173	32	28	15	24	1.96
106318611--106318755	47	3.0	47	85	5	182	31	26	15	26	1.95
106318563--106318769	47	4.2	48	80	7	177	31	28	14	25	1.95
106323132--106323429	49	6.6	44	76	11	244	31	18	22	27	1.97
106323139--106323387	138	1.8	138	97	0	471	31	16	23	28	1.96
106323132--106323434	94	3.3	90	78	12	239	31	18	22	27	1.97
106323353--106323475	41	2.9	41	80	7	122	30	19	22	26	1.98
106323295--106323793	224	2.2	224	91	0	820	32	20	21	25	1.97
106323577--106323699	41	2.9	41	79	7	113	30	20	22	26	1.98
106325596--106325682	2	46.0	2	71	15	51	39	2	2	56	1.25
106325596--106325723	23	5.4	22	70	13	76	35	3	2	57	1.30
106325602--106325691	14	6.4	14	72	15	62	37	2	2	57	1.23
106326882--106326975	26	3.6	26	89	0	143	27	10	25	36	1.89
106330794--106330873	36	2.2	36	88	0	115	27	10	20	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106330880--106331701	131	6.3	131	78	4	791	33	15	12	38	1.85
106330830--106331701	262	3.3	261	81	4	950	33	15	12	39	1.85
106330824--106331706	392	2.2	393	82	2	1015	32	15	12	39	1.85
106337675--106337704	6	5.0	6	100	0	60	33	0	0	66	0.92
106339677--106339703	6	4.5	6	100	0	54	51	14	33	0	1.43
106339664--106339703	18	2.2	18	86	0	53	47	17	30	5	1.69
106344257--106344281	5	5.0	5	100	0	50	60	20	0	20	1.37
106346321--106346362	14	3.0	14	85	0	57	40	2	0	57	1.12
106354177--106354208	13	2.5	13	100	0	64	12	9	43	34	1.75
106359033--106359095	25	2.4	27	76	7	67	52	6	0	41	1.27
106359307--106359336	3	9.7	3	92	7	51	33	3	0	63	1.11
106361488--106361538	24	2.2	22	82	6	57	25	1	3	68	1.17
106366809--106366868	31	1.9	31	83	6	77	50	0	13	36	1.42
106367734--106367859	22	5.4	22	75	11	101	28	19	17	34	1.95
106367733--106367862	46	2.8	45	83	5	143	29	20	17	33	1.95
106367734--106367861	24	5.5	24	76	9	104	28	20	17	33	1.96
106372063--106372107	20	2.2	20	84	7	56	51	0	8	40	1.33
106376135--106376177	18	2.4	18	92	7	70	55	0	0	44	0.99
106376138--106376174	8	4.4	8	87	12	56	59	0	0	40	0.97
106376207--106376248	19	2.3	18	80	11	50	69	2	23	4	1.20
106383672--106383722	15	3.4	15	78	10	59	62	1	0	35	1.06
106383731--106383796	22	2.8	23	77	9	62	74	3	21	1	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106383721--106383795	15	4.9	15	76	15	73	74	2	20	2	1.06
106383731--106383798	31	2.4	29	77	20	72	75	2	20	1	1.02
106384595--106384679	43	2.0	43	81	11	102	17	18	25	37	1.93
106391306--106391352	21	2.2	22	88	3	69	19	36	25	19	1.95
106409093--106409134	22	1.9	22	100	0	84	33	2	4	59	1.31
106409527--106409565	14	2.8	14	84	0	51	35	17	5	41	1.72
106410562--106410595	13	2.5	14	85	9	52	23	0	0	76	0.79
106410496--106410681	102	1.8	103	83	1	248	27	9	12	50	1.71
106415635--106415673	18	2.2	18	86	9	53	61	0	7	30	1.24
106420445--106421124	218	3.0	219	90	7	988	33	22	17	25	1.96
106421786--106421891	40	2.6	40	88	2	142	41	18	18	20	1.91
106425269--106425294	13	2.0	13	100	0	52	53	0	7	38	1.30
106427491--106427551	21	2.9	21	77	2	68	36	24	24	14	1.93
106435780--106435910	25	5.6	23	71	11	79	34	6	3	56	1.40
106435924--106435990	25	2.9	22	78	10	71	29	5	5	58	1.46
106435973--106436030	22	2.8	20	72	20	57	32	6	3	56	1.42
106435987--106436032	23	2.0	23	84	16	60	30	6	2	60	1.34
106436143--106436190	16	3.1	15	87	6	60	31	4	2	62	1.26
106436143--106436194	8	6.5	8	78	8	52	30	3	1	63	1.23
106442270--106442303	12	2.7	13	81	9	52	79	0	20	0	0.73
106443245--106443410	73	2.3	73	91	0	260	27	16	21	34	1.94
106443390--106443434	13	3.4	13	87	6	72	13	11	6	68	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106443321--106443606	100	2.9	101	88	3	420	24	17	19	39	1.92
106443328--106443699	100	3.8	99	84	9	412	25	16	19	38	1.92
106443624--106444258	73	8.6	74	87	3	904	30	16	20	32	1.95
106443623--106444254	295	2.1	296	91	1	1061	30	16	20	32	1.95
106443623--106444254	148	4.3	148	94	0	1061	30	16	20	32	1.95
106444195--106444736	92	6.0	89	77	8	408	28	16	17	37	1.91
106444396--106444699	89	3.4	87	82	8	330	30	15	17	35	1.92
106444303--106444725	89	4.7	89	75	13	321	30	15	17	36	1.92
106444396--106444773	87	4.3	86	76	12	304	30	15	17	36	1.91
106445427--106445482	18	3.4	18	65	27	52	25	50	7	17	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373