Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  126  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41428491--41428564
27
2.8
27
89
2
105
17
24
21
36
1.95
41428701--41428781
31
2.6
31
90
2
126
18
14
16
50
1.78
41428724--41428801
6
12.8
6
79
12
79
19
15
17
47
1.83
41430761--41430958
81
2.4
81
90
1
299
29
24
7
38
1.83
41430761--41430958
27
7.3
27
86
2
254
29
24
7
38
1.83
41430963--41431267
27
11.3
27
83
2
294
36
20
17
26
1.94
41430963--41431248
54
5.3
54
82
2
324
35
20
17
26
1.94
41431693--41431757
22
3.0
22
75
8
69
20
24
23
32
1.98
41431915--41431989
27
2.8
27
87
2
98
20
24
20
36
1.95
41432180--41432276
6
15.8
6
72
16
74
19
17
15
47
1.83
41432126--41432267
31
4.5
31
86
0
176
19
15
14
50
1.78
41432126--41432267
62
2.3
62
87
1
194
19
15
14
50
1.78
41447393--41447614
46
4.8
46
73
14
159
27
18
30
23
1.97
41447405--41447666
140
1.9
141
79
7
300
27
18
30
23
1.98
41456144--41456291
37
4.0
36
89
5
208
26
29
18
25
1.98
41456435--41456727
48
6.1
48
96
0
523
31
26
6
35
1.81
41467021--41467144
45
2.7
45
80
15
130
29
20
28
21
1.98
41470736--41470760
13
1.9
13
100
0
50
40
24
4
32
1.73
41473633--41473664
14
2.4
14
90
10
50
21
9
28
40
1.84
41473630--41474074
50
8.8
50
81
2
462
26
17
25
31
1.97
41473630--41474074
101
4.4
100
80
3
473
26
17
25
31
1.97
41473676--41474064
151
2.6
151
88
0
598
26
17
25
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41473988--41474069
26
3.2
26
62
25
66
25
14
28
31
1.95
41474507--41474547
21
1.9
22
85
5
57
41
14
0
43
1.45
41475735--41475764
15
1.9
16
93
6
53
20
23
6
50
1.71
41476434--41476465
16
2.0
16
100
0
64
43
0
18
37
1.51
41476718--41477045
180
1.8
180
88
3
509
38
9
17
34
1.83
41479855--41479898
15
2.9
16
86
6
56
15
20
11
52
1.74
41482830--41483213
50
7.6
50
77
4
315
26
17
24
30
1.97
41482936--41483113
51
3.5
50
72
7
155
26
19
23
31
1.98
41482881--41483163
101
2.8
100
81
3
343
26
18
24
30
1.98
41490371--41490499
46
2.8
46
84
9
147
27
18
30
23
1.98
41490513--41490642
49
2.6
49
87
3
172
26
19
32
22
1.97
41490465--41490642
99
1.8
94
83
10
234
26
19
31
22
1.98
41500832--41501134
40
7.6
40
89
2
396
27
28
20
24
1.99
41513919--41513958
16
2.5
16
87
0
62
47
0
0
52
1.00
41514093--41514136
19
2.3
20
80
11
56
36
0
0
63
0.95
41514462--41514495
14
2.4
14
90
0
50
73
0
26
0
0.83
41514645--41514676
11
2.8
12
90
9
50
37
0
0
62
0.95
41514748--41514779
12
2.7
12
90
0
55
34
0
6
59
1.23
41514746--41515178
105
4.1
102
83
10
525
32
0
13
54
1.41
41514745--41515178
209
2.1
208
85
6
590
32
0
13
54
1.41
41514762--41515161
107
3.8
105
85
7
519
31
0
14
54
1.42
41515142--41515176
16
2.2
16
90
5
54
28
0
8
62
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41520356--41520410
19
3.0
19
73
5
51
60
16
0
23
1.36
41520601--41520661
27
2.3
27
85
0
77
32
26
22
18
1.97
41520773--41520814
18
2.4
18
88
7
61
69
0
0
30
0.89
41534886--41534925
20
2.0
20
85
0
53
37
15
0
47
1.45
41540397--41540631
40
5.9
40
92
0
364
26
21
27
23
1.99
41540401--41540657
80
3.2
80
87
2
358
26
22
28
22
1.99
41548517--41548764
40
6.2
40
87
5
351
26
22
26
25
2.00
41574867--41575049
79
2.3
81
84
7
232
24
22
27
25
2.00
41574868--41575051
40
4.6
40
83
9
216
23
22
28
25
2.00
41574920--41575084
79
2.1
79
84
6
210
25
21
27
25
1.99
41581583--41581807
40
5.7
40
81
4
186
24
21
29
24
1.99
41581636--41581807
80
2.2
79
82
1
209
23
20
30
25
1.98
41581636--41581805
40
4.3
40
84
1
189
23
21
30
24
1.99
41581658--41581840
79
2.3
80
80
1
199
25
20
30
24
1.99
41584089--41584189
23
4.4
23
77
8
107
25
21
16
35
1.95
41584089--41584190
45
2.2
47
83
8
129
25
21
16
36
1.94
41585108--41585173
30
2.2
30
100
0
132
18
21
31
28
1.96
41588036--41588065
11
2.7
11
100
0
60
26
16
10
46
1.78
41590537--41590599
30
2.1
30
82
5
74
49
14
19
17
1.80
41593677--41593788
27
4.1
27
85
3
136
20
23
20
35
1.96
41604859--41604910
25
2.1
24
82
3
59
38
25
21
15
1.92
41621289--41621366
29
2.7
28
84
11
104
25
14
30
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41621319--41621646
174
1.9
174
95
0
593
30
14
24
30
1.94
41649486--41649519
13
2.7
13
95
4
61
29
41
29
0
1.57
41650647--41650727
42
1.9
42
82
9
103
33
23
12
30
1.92
41655144--41655168
13
1.9
13
100
0
50
40
8
16
36
1.77
41661156--41661445
47
6.1
47
94
2
490
33
8
30
27
1.86
41661156--41661445
96
3.0
96
94
1
512
33
8
30
27
1.86
41661156--41661445
143
2.0
143
94
2
512
33
8
30
27
1.86
41663263--41663455
40
4.9
40
94
1
327
21
22
31
25
1.98
41663263--41663455
79
2.4
80
93
1
327
21
22
31
25
1.98
41667500--41667853
47
7.4
47
92
3
566
33
7
30
27
1.85
41667500--41667853
96
3.7
96
91
5
567
33
7
30
27
1.85
41667500--41667853
145
2.5
142
92
2
586
33
7
30
27
1.85
41671433--41671595
42
3.9
42
84
6
197
28
25
17
29
1.97
41680820--41680844
11
2.3
11
100
0
50
44
0
0
56
0.99
41688887--41688954
29
2.3
29
85
5
93
27
30
13
27
1.94
41688776--41689103
174
1.9
174
94
0
584
30
24
14
30
1.95
41689062--41689134
29
2.5
30
84
13
107
28
28
15
27
1.96
41697035--41697102
29
2.3
29
85
5
93
27
30
13
27
1.94
41696924--41697250
173
1.9
174
94
0
575
31
24
14
30
1.94
41697209--41697281
29
2.5
30
84
13
107
28
28
15
27
1.96
41699954--41699992
18
2.2
18
85
0
51
28
23
17
30
1.97
41704661--41704878
45
4.8
45
85
4
228
43
16
17
22
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41704711--41704862
45
3.4
45
94
1
252
44
16
17
21
1.87
41704711--41704916
90
2.3
90
83
3
227
41
16
19
22
1.90
41706760--41706832
25
2.9
25
81
2
83
27
16
23
32
1.96
41706760--41706849
25
3.5
26
80
4
78
25
17
25
31
1.97
41709713--41709872
39
4.1
39
87
6
225
23
22
28
25
1.99
41712703--41712732
15
2.0
15
93
0
51
56
0
6
36
1.26
41713152--41713219
32
2.2
32
97
2
129
38
17
8
35
1.81
41715243--41715278
17
2.1
18
89
5
56
61
0
0
38
0.96
41722375--41722446
36
2.0
36
97
0
135
22
11
12
54
1.69
41727338--41727550
93
2.3
93
89
0
327
16
22
15
46
1.84
41739778--41740351
69
8.3
68
76
5
447
36
21
18
22
1.95
41747366--41747409
3
14.7
3
100
0
88
31
0
0
68
0.90
41747797--41747842
24
2.0
24
86
4
67
32
2
10
54
1.47
41748520--41748559
17
2.2
19
83
16
50
40
0
0
60
0.97
41750055--41750100
17
2.7
18
75
24
55
21
6
2
69
1.22
41752250--41752279
14
2.1
14
93
0
51
16
10
6
66
1.41
41752766--41752827
31
2.0
31
90
0
97
53
6
20
19
1.67
41754591--41754630
14
2.9
14
92
3
64
35
7
22
35
1.82
41755142--41755178
19
1.9
19
88
0
56
43
21
5
29
1.75
41756124--41756202
32
2.5
32
91
4
124
51
20
1
26
1.55
41757869--41757904
2
18.0
2
88
11
56
2
47
0
50
1.15
41770456--41770497
6
7.0
6
84
10
50
19
0
2
78
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41770456--41770497
11
3.5
12
87
6
50
19
0
2
78
0.86
41776780--41776846
21
3.3
21
73
12
77
13
23
22
40
1.89
41776762--41776862
39
2.6
39
95
0
175
12
25
23
37
1.91
41780323--41780547
40
5.7
40
83
6
242
25
27
21
25
1.99
41780479--41780556
40
1.9
41
82
10
97
26
28
20
24
1.99
41792350--41792478
45
2.9
45
84
3
154
32
26
17
24
1.96
41795181--41795284
53
2.0
53
84
1
138
19
25
18
36
1.94
41802900--41803077
45
4.0
45
76
11
163
33
24
15
26
1.95
41807427--41807465
19
2.1
19
85
4
53
2
17
0
79
0.84
41807436--41807505
6
11.5
6
75
13
54
4
15
2
77
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373