genome.fa.s8.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  142  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47101185--47101417	54	4.3	53	77	8	197	28	12	20	39	1.88
47101102--47101392	27	10.8	27	82	6	159	27	14	19	37	1.92
47101276--47101417	27	5.3	27	84	3	144	29	9	20	40	1.85
47101411--47101590	27	6.7	27	89	0	234	41	7	20	30	1.80
47101582--47101742	27	6.0	27	74	13	127	31	11	17	39	1.86
47101583--47101742	53	3.0	53	77	9	155	31	11	17	39	1.86
47101592--47101742	80	1.9	81	86	6	218	30	11	16	41	1.85
47101600--47101742	54	2.7	53	77	9	155	31	11	16	40	1.84
47101680--47101756	27	2.9	27	82	3	75	37	9	12	40	1.76
47103997--47104090	25	3.8	25	91	1	145	26	23	25	24	2.00
47104295--47104562	27	10.0	27	84	2	297	24	19	19	36	1.94
47104312--47104562	134	1.9	134	88	1	378	24	18	19	37	1.94
47104525--47104760	27	8.8	27	74	10	162	29	9	21	39	1.85
47104583--47104760	54	3.3	54	85	1	205	29	8	20	41	1.81
47104606--47104765	81	2.0	81	86	2	223	30	6	21	41	1.79
47104605--47104765	27	6.0	27	86	2	180	29	7	21	40	1.81
47104635--47104785	81	1.9	81	83	2	196	30	6	22	40	1.79
47104711--47104977	81	3.3	81	79	0	219	38	9	20	31	1.85
47104754--47104956	27	7.5	27	91	0	298	40	10	20	28	1.85
47104960--47105111	27	5.7	27	77	6	148	30	11	19	38	1.87
47104753--47104988	54	4.4	54	80	3	242	39	9	21	29	1.85
47104960--47105117	80	2.0	82	87	2	230	31	11	19	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47104969--47105111	54	2.7	53	79	5	171	32	11	18	37	1.86
47106434--47106463	11	2.7	11	94	0	51	86	0	13	0	0.57
47107399--47107518	25	4.8	25	85	4	170	26	20	24	28	1.99
47107725--47107942	27	8.1	27	81	2	204	23	20	19	36	1.95
47107727--47107948	54	4.1	53	83	2	255	22	20	18	37	1.94
47107723--47107939	81	2.7	80	84	4	283	22	20	20	36	1.95
47107931--47108081	27	5.6	27	79	7	130	30	10	19	39	1.85
47107927--47108108	54	3.4	54	80	3	154	30	9	19	40	1.84
47107976--47108230	27	9.4	27	82	5	133	34	7	21	36	1.83
47108101--47108238	27	5.1	27	91	0	204	38	7	23	31	1.82
47108446--47108539	25	3.8	24	88	6	143	26	25	24	23	2.00
47108745--47108984	81	3.0	80	89	0	354	25	21	17	35	1.95
47108746--47108989	27	9.1	27	87	2	321	25	21	17	35	1.95
47108977--47109179	53	3.8	52	79	7	185	30	8	19	41	1.81
47108977--47109180	80	2.6	80	85	3	261	30	8	19	41	1.81
47108977--47109180	27	7.7	27	78	4	191	30	8	19	41	1.81
47109057--47109220	27	6.1	27	80	4	134	31	7	21	38	1.83
47109057--47109206	80	1.9	80	84	2	203	31	8	21	39	1.82
47109172--47109356	27	6.9	27	85	3	167	40	8	20	30	1.82
47109182--47109356	54	3.2	54	83	0	233	41	9	20	29	1.83
47109173--47109356	81	2.3	81	82	1	226	40	8	20	30	1.82
47109228--47109377	81	1.9	81	85	2	212	38	9	18	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47109345--47109480	27	5.0	27	78	8	132	31	10	19	38	1.85
47114972--47115051	7	11.0	7	90	6	124	27	0	1	71	0.94
47116062--47116243	7	25.6	7	73	9	73	42	34	0	22	1.58
47116066--47116112	22	2.2	20	82	10	58	27	44	0	27	1.55
47116134--47116243	21	5.2	22	79	7	84	45	34	0	19	1.56
47116191--47116292	7	14.4	7	73	13	75	50	24	1	22	1.59
47116594--47116734	40	3.5	40	77	1	129	27	17	21	33	1.96
47116794--47116918	40	3.1	40	88	0	169	26	22	20	31	1.98
47119868--47119940	29	2.5	29	88	4	103	19	23	36	20	1.95
47123664--47123702	20	2.0	20	89	0	60	38	38	5	17	1.72
47127994--47128046	14	3.7	14	79	20	65	22	22	11	43	1.85
47133097--47134672	132	11.9	131	90	3	496	30	16	24	27	1.97
47133276--47134763	132	11.3	132	93	0	2449	30	16	24	27	1.97
47135019--47135066	20	2.4	20	89	0	78	43	33	4	18	1.69
47136964--47137183	49	4.5	49	97	2	401	28	31	8	32	1.86
47140743--47140775	3	10.7	3	93	6	57	36	0	0	63	0.95
47154625--47154711	43	2.0	43	100	0	174	34	9	13	42	1.77
47156636--47156754	43	2.8	41	74	13	105	26	28	17	26	1.98
47156721--47156946	48	4.7	48	92	0	353	28	29	16	25	1.97
47171511--47171688	27	6.6	26	82	6	178	26	15	28	29	1.96
47171512--47171667	82	1.9	81	86	3	224	26	16	28	28	1.97
47171508--47171688	82	2.2	81	82	2	220	27	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47171593--47171699	27	3.9	27	85	1	70	26	14	28	30	1.95
47182706--47182884	47	3.8	49	80	13	196	29	28	20	22	1.98
47182714--47182884	94	1.8	93	91	1	279	28	28	20	22	1.98
47183304--47183363	30	2.0	30	83	6	77	28	26	6	38	1.81
47183744--47183788	16	2.8	16	86	6	56	51	0	6	42	1.28
47191551--47191612	31	2.0	32	87	3	90	20	22	19	37	1.95
47199551--47199587	6	6.5	6	81	12	51	83	0	16	0	0.64
47199551--47199587	17	2.2	17	90	0	56	83	0	16	0	0.64
47200846--47201063	40	5.5	40	88	2	289	22	24	27	24	2.00
47207632--47207666	10	3.4	10	88	4	52	80	0	20	0	0.72
47208924--47209141	40	5.5	40	90	2	289	22	24	28	24	1.99
47213030--47213141	23	4.8	23	71	14	61	38	14	16	30	1.89
47215654--47215791	41	3.2	43	78	12	133	30	26	18	25	1.98
47222960--47223054	39	2.5	39	81	5	104	26	30	23	20	1.98
47223037--47223144	39	2.8	39	88	5	164	26	30	19	23	1.98
47222993--47223144	78	1.9	78	80	5	173	26	29	20	23	1.99
47229304--47229365	29	2.2	28	84	15	85	16	8	3	72	1.21
47235241--47235274	17	1.9	18	88	5	52	47	0	2	50	1.16
47235346--47235425	39	2.1	39	100	0	160	37	10	2	50	1.50
47247023--47247092	28	2.5	28	90	4	106	27	14	25	32	1.94
47250437--47250493	30	1.9	30	88	0	87	42	7	24	26	1.80
47260685--47260803	42	2.9	42	72	6	116	31	12	26	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47261944--47261986	21	2.0	21	100	0	86	41	11	4	41	1.62
47267335--47267470	50	2.7	49	86	7	177	25	16	28	30	1.96
47270303--47270431	46	2.8	46	78	8	136	29	20	28	20	1.98
47272681--47272786	46	2.2	49	86	6	146	36	14	23	25	1.92
47279117--47279214	42	2.3	42	84	8	128	31	12	21	34	1.90
47280456--47280509	27	2.0	27	96	0	99	37	12	16	33	1.87
47283544--47283646	37	2.8	37	96	0	188	24	32	20	23	1.98
47283793--47284220	48	8.9	48	93	0	721	31	25	6	36	1.81
47289727--47289779	27	2.0	27	84	0	70	39	7	13	39	1.73
47290027--47290258	50	4.7	50	81	3	281	25	18	28	28	1.98
47290030--47290271	99	2.4	99	83	3	290	25	19	27	28	1.99
47294307--47294343	19	2.0	19	85	15	51	67	16	0	16	1.23
47295890--47295930	22	1.9	22	85	5	57	17	29	41	12	1.85
47297050--47297319	47	5.8	44	76	12	204	22	30	20	27	1.98
47297146--47297315	46	3.7	46	82	9	193	21	30	22	25	1.99
47297100--47297319	94	2.3	92	83	9	250	22	30	21	26	1.99
47297051--47297315	140	1.9	141	83	3	347	22	30	20	26	1.98
47302231--47302299	27	2.6	27	80	0	75	26	13	18	42	1.87
47303568--47303690	46	2.6	46	79	7	124	26	21	28	24	1.99
47314291--47314513	112	2.0	112	91	0	365	26	27	25	21	1.99
47328311--47328483	45	3.8	45	75	11	156	27	30	20	21	1.98
47343093--47343142	25	2.0	25	100	0	100	36	32	4	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47345504--47345552	6	8.0	6	84	4	62	14	6	0	79	0.91
47345504--47345577	24	3.0	25	82	9	82	16	6	0	77	0.98
47345513--47345577	12	5.3	12	73	12	53	15	6	0	78	0.94
47345524--47345577	19	2.8	18	86	8	63	14	7	0	77	0.97
47348440--47348472	13	2.6	13	90	4	50	39	0	12	48	1.40
47351804--47352068	46	5.7	46	79	10	254	23	27	19	28	1.98
47351802--47352072	94	2.9	92	79	11	284	23	27	19	28	1.98
47359702--47359773	26	2.8	26	82	2	92	26	23	19	30	1.98
47359990--47360075	31	2.8	31	92	1	147	32	17	25	24	1.97
47375826--47375936	42	2.6	42	81	2	125	32	15	23	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373