Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  145  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48048059--48048131
21
3.0
26
69
19
75
63
1
2
32
1.17
48048076--48048131
20
2.8
20
80
2
67
64
1
1
32
1.14
48048146--48048207
24
2.7
23
80
5
63
53
4
4
37
1.44
48048733--48048772
19
2.1
19
86
9
55
65
0
2
32
1.06
48048733--48048784
25
2.0
28
82
17
67
61
0
3
34
1.14
48050290--48050351
23
2.5
24
87
10
90
66
4
1
27
1.21
48050322--48050357
17
2.1
17
94
0
63
69
5
5
19
1.29
48050513--48050550
10
3.8
10
85
0
58
36
0
36
26
1.57
48051315--48051348
17
2.0
17
88
0
50
35
2
11
50
1.54
48051516--48051570
20
2.7
20
77
2
65
61
0
0
38
0.96
48053358--48053491
68
2.0
68
100
0
268
27
11
2
57
1.49
48053369--48053476
35
3.1
35
62
19
91
29
10
3
56
1.50
48056278--48056324
24
1.9
24
86
4
67
61
2
6
29
1.32
48056718--48056757
21
1.9
21
85
10
55
57
5
5
32
1.42
48057867--48058009
76
1.9
75
88
1
214
27
9
18
44
1.81
48061083--48061127
20
2.2
20
88
0
63
51
0
13
35
1.41
48063273--48063331
20
3.0
20
87
7
84
10
30
25
33
1.89
48067226--48067400
56
3.1
54
86
5
244
24
13
30
32
1.93
48067247--48067400
28
5.6
28
96
1
276
25
13
29
31
1.94
48071072--48071181
43
2.6
42
84
2
148
29
18
25
27
1.98
48072439--48072477
20
1.9
21
84
5
53
30
5
15
48
1.66
48073061--48073109
24
1.9
26
88
12
75
36
4
10
48
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48077223--48077375
41
3.6
42
78
6
141
30
15
24
30
1.95
48081469--48081640
49
3.5
49
87
3
224
25
27
19
28
1.98
48087998--48088037
21
2.0
21
95
5
73
20
30
40
10
1.85
48090200--48090240
22
1.9
22
90
5
66
29
0
26
43
1.55
48100061--48100087
11
2.5
11
100
0
54
33
0
0
66
0.92
48100598--48100712
52
2.2
52
96
1
214
32
19
16
32
1.94
48106373--48106411
20
2.0
20
89
0
60
48
2
12
35
1.55
48108893--48108953
30
2.0
30
83
0
77
31
22
8
37
1.84
48116691--48116788
27
3.5
28
88
5
128
32
28
13
25
1.93
48124977--48125074
27
3.5
28
88
5
128
32
28
13
25
1.93
48131168--48131375
104
2.0
104
96
0
380
33
15
25
25
1.95
48140224--48140483
40
6.8
40
84
9
332
30
19
27
22
1.98
48140227--48140449
114
2.0
113
89
5
344
30
19
27
22
1.98
48154324--48154495
79
2.2
79
84
3
220
25
21
27
25
1.99
48154271--48154493
40
5.6
39
81
8
209
25
21
27
25
1.99
48154351--48154528
79
2.2
80
80
3
191
25
21
28
24
1.99
48158755--48158795
21
2.0
21
85
0
55
21
17
41
19
1.90
48159682--48159742
30
2.0
30
83
0
77
37
6
24
31
1.81
48162273--48162359
43
2.0
43
100
0
174
29
11
27
31
1.92
48165349--48165507
43
3.7
42
75
5
142
32
24
17
25
1.97
48174613--48174696
39
2.2
39
91
6
136
41
14
16
27
1.87
48181738--48181909
46
3.7
46
75
13
181
29
28
19
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48181745--48181916
93
1.8
93
91
0
281
28
27
20
22
1.99
48188846--48189017
93
1.8
93
92
0
290
27
27
21
22
1.99
48188839--48189014
46
3.8
46
78
12
189
28
27
21
22
1.99
48194101--48194146
20
2.5
18
86
10
58
39
28
0
32
1.57
48198513--48198677
43
3.9
42
69
16
126
28
13
25
32
1.93
48206487--48206523
19
1.9
19
88
0
56
32
0
24
43
1.55
48208615--48208837
79
2.8
78
81
11
258
25
27
21
25
2.00
48208615--48208837
39
5.7
40
85
8
257
25
27
21
25
2.00
48216604--48216826
79
2.8
78
81
9
256
25
26
21
26
2.00
48216604--48216826
39
5.6
39
83
8
233
25
26
21
26
2.00
48237676--48237736
23
2.8
21
72
18
54
37
19
21
21
1.94
48239492--48239518
13
2.1
13
100
0
54
48
0
0
51
1.00
48242723--48242815
40
2.3
40
84
0
114
21
13
29
35
1.92
48245769--48245826
26
2.2
26
81
3
71
25
22
18
32
1.97
48246485--48246546
31
2.0
32
87
3
90
20
24
19
35
1.96
48253168--48253573
47
8.6
47
93
2
652
29
30
8
32
1.87
48253218--48253296
25
3.3
25
66
16
76
31
29
5
34
1.79
48253168--48253573
191
2.2
190
91
3
651
29
30
8
32
1.87
48258383--48258640
40
6.5
40
87
4
337
22
22
27
26
1.99
48272177--48272274
27
3.5
28
88
5
128
32
28
13
25
1.93
48277677--48277738
32
1.9
32
93
0
106
14
19
9
56
1.65
48279342--48279440
41
2.4
42
82
3
110
40
22
16
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48279373--48279454
43
1.9
43
82
0
101
37
21
19
20
1.94
48279446--48279546
50
2.0
50
92
0
166
22
18
29
28
1.98
48279496--48279624
41
3.1
41
92
4
224
22
18
29
29
1.97
48280268--48280302
14
2.5
14
85
0
52
34
0
20
45
1.51
48280347--48280399
14
3.8
14
84
0
79
13
0
28
58
1.35
48280341--48280407
28
2.4
28
79
0
89
11
0
23
64
1.27
48280812--48280848
18
2.1
18
90
5
58
45
0
2
51
1.15
48280811--48280851
17
2.3
18
83
12
57
46
0
2
51
1.14
48285597--48285804
40
5.2
40
91
0
301
23
22
26
26
2.00
48288962--48289034
31
2.3
33
82
15
93
23
2
2
71
1.12
48288961--48289032
19
3.9
18
74
12
58
23
2
2
70
1.13
48288965--48289039
6
12.2
6
71
10
53
24
2
2
70
1.13
48289042--48289075
11
3.1
11
91
8
52
44
0
8
47
1.34
48290738--48290762
12
2.1
12
100
0
50
40
8
0
52
1.31
48296693--48297097
213
1.9
216
89
3
636
57
20
4
17
1.58
48299791--48300322
277
2.0
265
91
5
868
40
15
11
31
1.84
48301612--48301663
28
1.9
27
88
7
79
26
15
28
28
1.96
48302264--48302309
14
3.4
14
77
11
51
30
2
10
56
1.46
48305281--48305541
41
6.4
41
90
0
344
36
22
22
18
1.95
48305293--48305541
82
3.0
82
91
0
392
35
23
22
18
1.96
48305293--48305541
123
2.0
122
91
0
399
35
23
22
18
1.96
48305710--48305790
21
3.7
21
75
12
81
28
1
24
45
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48305713--48305806
46
2.0
46
91
0
152
29
2
24
43
1.66
48305850--48305923
7
10.6
7
74
11
53
20
0
41
37
1.52
48305856--48305923
21
3.2
22
76
15
72
20
0
42
36
1.52
48306380--48306442
23
2.7
23
75
18
76
36
0
6
57
1.24
48310620--48310729
40
2.8
40
94
2
186
26
27
21
24
1.99
48310706--48310753
24
2.0
24
100
0
96
20
29
20
29
1.98
48310666--48310793
64
2.0
64
98
0
247
24
28
20
27
1.99
48310730--48310816
40
2.2
40
97
0
165
22
28
21
26
1.99
48310626--48310816
104
1.8
104
92
2
321
24
28
21
25
1.99
48319345--48319454
40
2.8
40
94
2
186
26
27
21
24
1.99
48319431--48319478
24
2.0
24
95
0
87
20
27
20
31
1.98
48319391--48319518
64
2.0
64
96
0
238
24
27
20
28
1.99
48319455--48319541
40
2.2
40
95
0
156
22
27
21
27
1.99
48319351--48319541
104
1.8
104
90
2
312
24
27
21
26
1.99
48324175--48324270
46
2.0
49
86
8
135
30
5
5
59
1.41
48324261--48324364
43
2.4
43
88
0
163
21
22
29
26
1.99
48327594--48327630
18
2.1
18
100
0
74
56
27
10
5
1.55
48330581--48330640
30
2.0
30
83
0
75
30
23
10
36
1.87
48335552--48335593
20
2.0
22
86
13
61
30
4
16
47
1.67
48337884--48337954
24
2.9
24
75
4
70
16
23
19
39
1.92
48338064--48338115
23
2.2
24
86
3
70
21
32
19
26
1.97
48339790--48339930
39
3.6
39
91
1
212
44
20
4
29
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48341128--48341174
24
2.0
24
91
0
76
36
2
38
23
1.67
48342593--48342704
54
2.1
54
86
3
154
16
23
22
37
1.94
48342593--48342704
27
4.2
26
84
7
134
16
23
22
37
1.94
48346701--48346800
51
2.0
51
83
0
128
34
25
16
25
1.95
48346709--48346812
51
2.0
51
81
0
118
33
26
14
25
1.94
48362069--48362113
23
2.0
23
82
8
56
51
13
4
31
1.61
48373299--48373474
46
3.8
46
78
10
187
21
21
28
28
1.98
48373296--48373467
93
1.8
93
91
0
281
21
22
29
27
1.99
48375011--48375227
40
5.5
40
88
3
289
24
28
23
23
1.99
48379763--48379824
15
4.2
15
80
10
65
11
19
12
56
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373