Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  128  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42285081--42285494
47
8.7
47
74
10
249
27
17
29
25
1.98
42289196--42289316
42
2.9
42
82
4
163
28
24
16
29
1.97
42291275--42291366
44
2.1
44
93
0
157
32
10
10
45
1.74
42291978--42292078
30
3.3
31
69
6
89
39
2
4
52
1.38
42294355--42294411
28
2.0
29
83
10
73
47
10
12
29
1.74
42297390--42297432
22
2.0
22
90
0
68
44
0
25
30
1.55
42299701--42299798
27
3.6
27
86
2
117
41
21
8
28
1.81
42299819--42300274
27
16.9
27
86
1
585
33
20
21
24
1.97
42300701--42300765
22
3.0
22
80
8
78
20
23
23
33
1.97
42301418--42301485
34
2.0
34
97
0
127
42
11
26
19
1.85
42301848--42301961
27
4.2
27
86
0
156
41
18
9
30
1.83
42301957--42302555
27
22.3
27
84
3
688
34
19
20
24
1.96
42302982--42303046
22
3.0
22
82
8
87
20
21
23
35
1.96
42303205--42303306
27
3.8
27
87
5
134
18
23
21
36
1.95
42303443--42303553
6
17.8
6
68
20
59
19
15
15
49
1.79
42303443--42303553
31
3.5
31
86
1
141
19
15
15
49
1.79
42303453--42303508
19
3.3
19
63
31
54
19
14
16
50
1.79
42305321--42305552
40
5.8
41
85
4
303
24
21
28
25
1.99
42305321--42305572
120
2.1
120
91
2
418
23
21
28
26
1.99
42305321--42305552
80
2.9
80
88
1
340
24
21
28
25
1.99
42313310--42313501
40
4.8
40
91
1
287
25
21
28
25
1.99
42322149--42322359
40
5.3
40
85
6
223
23
20
27
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42327472--42327649
27
6.6
26
82
6
169
26
15
28
28
1.96
42327473--42327628
82
1.9
81
85
3
215
26
16
28
28
1.97
42327469--42327649
82
2.2
81
81
2
211
27
16
28
28
1.97
42327554--42327660
27
3.9
27
85
1
70
26
14
28
30
1.95
42330049--42330094
20
2.3
20
82
14
60
28
28
17
26
1.98
42330061--42330103
19
2.2
20
83
4
52
34
25
18
20
1.96
42336192--42336243
25
2.1
25
96
0
95
40
9
1
48
1.47
42337742--42338046
40
7.7
40
91
2
436
28
29
19
22
1.98
42368209--42368278
28
2.5
26
78
17
70
52
2
0
44
1.15
42378004--42378073
22
3.2
22
69
16
56
22
4
1
71
1.12
42379707--42379882
46
3.8
46
76
12
198
28
29
20
21
1.98
42379714--42379885
93
1.8
93
93
0
299
27
29
20
21
1.98
42379715--42379901
46
4.0
45
71
18
134
28
28
20
22
1.98
42382135--42382355
40
5.6
40
84
3
223
25
28
21
24
1.99
42382287--42382364
40
1.9
41
82
10
97
26
28
21
23
1.99
42384549--42384577
5
5.8
5
100
0
58
82
0
17
0
0.66
42387064--42387103
18
2.3
18
86
4
55
40
12
15
32
1.84
42387765--42387797
17
1.9
17
93
0
57
54
9
3
33
1.47
42389567--42389748
40
4.6
40
81
6
201
25
28
21
25
1.99
42389595--42389698
39
2.6
40
90
1
165
25
28
21
25
1.99
42389595--42389748
79
1.9
80
83
6
197
24
28
21
25
1.99
42398086--42398262
90
2.0
91
91
1
293
30
22
15
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42398918--42398942
12
2.1
12
100
0
50
32
24
0
44
1.54
42403586--42403834
117
2.1
117
95
0
444
26
18
13
41
1.87
42404432--42404470
10
3.9
10
83
9
53
82
0
17
0
0.68
42405728--42405945
40
5.5
40
87
2
271
23
22
29
24
1.99
42412448--42412486
19
2.1
19
85
9
53
79
0
20
0
0.73
42413744--42413961
40
5.5
40
91
3
309
22
23
28
25
1.99
42422880--42422909
14
2.1
15
93
6
53
60
0
40
0
0.97
42423020--42423053
17
2.0
17
94
0
59
20
11
8
58
1.59
42435273--42435311
17
2.3
18
86
8
55
20
7
0
71
1.10
42439307--42439447
40
3.5
40
92
1
221
25
29
24
21
1.99
42442092--42442122
13
2.4
13
100
0
62
0
16
35
48
1.46
42451455--42451600
27
5.4
27
89
0
184
36
18
19
25
1.95
42456540--42456652
38
2.9
38
86
2
136
23
23
26
25
2.00
42456559--42456663
38
2.8
38
88
0
147
21
21
27
28
1.99
42456656--42456737
43
1.9
43
84
0
110
14
24
31
29
1.95
42462695--42462801
40
2.7
40
97
0
196
30
25
20
23
1.98
42466164--42466308
27
5.4
27
82
4
177
35
20
21
22
1.96
42466165--42466308
53
2.7
54
85
3
193
36
20
20
22
1.95
42466938--42467079
71
2.1
68
85
7
189
19
26
21
32
1.97
42467047--42467107
27
2.3
26
85
5
77
24
22
18
34
1.96
42471032--42471056
12
2.1
12
100
0
50
16
8
16
60
1.58
42476356--42476454
28
3.5
28
77
0
90
23
30
17
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42476472--42476557
40
2.2
39
85
6
111
29
26
17
26
1.98
42480920--42480944
12
2.1
12
100
0
50
16
8
16
60
1.58
42482507--42482554
21
2.2
21
92
3
78
52
12
16
18
1.75
42491965--42491989
13
1.9
13
100
0
50
32
40
16
12
1.84
42494512--42494782
94
2.9
94
83
3
339
32
16
20
30
1.95
42494511--42494826
94
3.4
94
79
5
273
33
17
19
29
1.95
42494651--42494919
144
1.9
144
88
1
405
30
17
19
31
1.95
42494795--42495026
95
2.5
94
87
0
320
31
16
19
32
1.95
42501906--42501945
6
6.7
6
94
0
71
65
17
0
17
1.28
42512636--42512681
23
2.0
23
100
0
92
34
17
17
30
1.93
42514268--42514585
94
3.4
95
76
10
271
22
29
19
27
1.98
42514268--42514587
46
6.8
48
73
15
222
22
30
19
27
1.98
42521395--42521823
27
15.9
27
83
4
436
26
12
20
41
1.87
42522136--42522207
18
4.1
18
80
7
85
26
19
9
44
1.81
42528066--42528121
15
3.7
15
70
15
53
12
16
12
58
1.62
42530294--42530365
21
3.3
21
62
11
54
37
4
19
38
1.71
42530296--42530384
45
2.0
45
100
0
178
35
4
15
43
1.67
42532306--42532479
51
3.5
48
80
9
188
31
25
17
25
1.97
42543391--42543423
16
2.1
16
100
0
66
12
24
39
24
1.89
42558993--42559295
40
7.6
40
90
2
396
24
20
28
27
1.99
42565378--42565407
14
2.1
14
100
0
60
13
13
20
53
1.72
42566804--42566848
23
2.0
23
100
0
90
33
0
22
44
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42568346--42568460
27
4.3
27
79
2
133
33
19
21
25
1.97
42568357--42568459
53
1.9
53
84
0
134
33
19
22
24
1.97
42569180--42569241
31
2.0
32
90
3
99
19
25
19
35
1.95
42569179--42569262
27
2.9
29
80
7
82
23
25
17
33
1.97
42571245--42571278
18
1.9
18
88
5
52
44
11
29
14
1.81
42575914--42576032
27
4.4
27
76
2
105
38
20
19
21
1.93
42575914--42576016
54
1.9
54
84
4
136
39
21
17
21
1.92
42580239--42580277
21
1.9
20
89
5
60
28
2
23
46
1.65
42583257--42583479
79
2.8
78
82
9
265
24
27
22
25
2.00
42583257--42583479
39
5.7
40
86
8
266
24
27
22
25
2.00
42591248--42591470
79
2.8
78
82
9
256
24
27
22
25
2.00
42591248--42591470
39
5.7
40
85
8
257
24
27
22
25
2.00
42595886--42595917
12
2.7
12
95
0
55
21
31
31
15
1.95
42597597--42597747
43
3.5
43
81
2
178
33
23
15
27
1.95
42598667--42598818
76
2.0
76
93
2
261
40
19
9
29
1.84
42610568--42610594
9
3.0
9
100
0
54
55
11
11
22
1.66
42613065--42613101
18
2.1
18
90
5
58
54
5
13
27
1.61
42613247--42613380
57
2.4
58
76
9
143
34
12
21
31
1.91
42615089--42615171
41
2.0
41
100
0
166
36
12
14
37
1.83
42616824--42616938
61
2.0
60
81
10
139
31
15
22
30
1.95
42618711--42618882
79
2.2
79
84
3
220
25
21
27
25
1.99
42618658--42618880
40
5.6
39
81
8
209
25
21
26
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42618738--42618915
79
2.2
80
80
3
191
25
21
28
24
1.99
42633600--42633818
39
5.6
39
83
8
221
25
21
27
26
1.99
42633676--42633853
78
2.3
78
80
2
198
26
20
28
25
1.99
42641547--42641715
40
4.3
39
82
6
180
26
20
26
26
1.99
42641547--42641715
78
2.1
80
82
4
200
26
20
26
26
1.99
42643550--42643732
79
2.3
81
82
7
214
25
27
21
24
1.99
42643529--42643732
40
5.1
40
80
8
220
25
27
21
25
1.99
42651651--42651781
40
3.3
40
88
3
167
25
28
20
25
1.99
42651679--42651834
39
3.9
38
80
9
145
25
27
21
25
1.99
42651657--42651834
79
2.2
80
80
8
204
24
28
22
24
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373