Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  357  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118383187--118383256
24
2.9
24
79
8
88
34
28
12
24
1.92
118390871--118390932
24
2.6
24
86
0
88
30
33
11
24
1.90
118394809--118395639
145
5.8
145
85
6
1133
56
6
8
29
1.54
118395120--118395351
129
1.8
123
85
5
297
55
8
6
29
1.56
118395188--118395239
13
4.2
13
90
4
72
69
5
5
19
1.30
118394939--118395498
275
2.0
275
89
2
876
56
6
8
28
1.55
118394791--118395639
420
2.0
422
95
1
1542
56
6
8
28
1.54
118395718--118395787
27
2.6
27
90
0
113
17
34
28
20
1.95
118400500--118400524
12
2.1
12
100
0
50
16
0
0
84
0.63
118404945--118404969
12
2.1
12
100
0
50
16
0
0
84
0.63
118407194--118407506
166
1.9
166
80
5
364
41
12
6
39
1.68
118407774--118407812
18
2.2
18
90
0
60
84
0
10
5
0.76
118408942--118408979
19
2.0
19
94
0
67
31
23
10
34
1.89
118415189--118415395
47
4.2
48
81
5
195
24
16
28
29
1.97
118418943--118418992
15
3.3
15
88
0
73
10
18
14
58
1.63
118420870--118421076
47
4.2
48
80
5
186
25
16
28
29
1.97
118424628--118424670
15
2.9
15
82
0
50
13
20
13
51
1.76
118426536--118426742
47
4.2
48
81
5
195
24
16
28
29
1.97
118431113--118431153
6
6.8
6
97
0
64
17
78
0
4
0.93
118436059--118436109
21
2.4
21
78
15
59
39
3
9
47
1.55
118436088--118436606
17
29.9
17
69
15
219
43
11
11
33
1.77
118436088--118436605
34
14.9
33
73
13
262
43
11
11
33
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118436235--118436515
35
7.9
35
73
12
164
41
11
12
33
1.79
118436235--118436548
74
4.4
73
77
11
224
42
10
12
34
1.77
118436541--118436594
16
3.2
16
75
14
56
40
9
14
35
1.78
118436758--118436814
17
3.4
16
78
9
60
71
1
0
26
0.95
118436757--118436815
6
10.2
6
82
12
54
69
1
0
28
0.98
118436943--118436999
9
6.7
9
78
10
50
0
15
1
82
0.75
118436940--118436997
17
3.6
16
84
11
82
0
18
1
79
0.82
118437116--118437169
23
2.3
24
93
6
101
0
25
9
64
1.23
118437300--118437359
24
2.5
24
86
7
79
0
33
0
66
0.92
118437288--118437359
3
24.0
3
78
16
62
0
30
0
69
0.89
118437311--118437359
13
3.9
13
75
24
52
0
36
0
63
0.95
118437328--118437356
10
2.9
10
100
0
58
0
37
0
62
0.96
118437419--118437462
18
2.4
19
84
3
54
0
31
0
68
0.90
118437690--118437799
30
3.7
30
78
8
118
47
0
20
30
1.57
118437690--118437806
60
2.0
59
83
8
148
46
1
20
31
1.61
118438076--118438770
54
13.0
54
90
5
1078
38
17
14
28
1.90
118438076--118438770
212
3.3
213
93
3
1145
38
17
14
28
1.90
118438076--118438770
266
2.6
266
93
2
1182
38
17
14
28
1.90
118438718--118439336
72
8.5
72
93
1
1015
34
18
16
30
1.93
118438718--118439336
145
4.3
145
94
1
1044
34
18
16
30
1.93
118439333--118439367
17
2.1
17
88
0
52
65
5
11
17
1.43
118439351--118439669
123
2.6
122
91
3
512
36
21
14
27
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118447907--118448216
17
18.4
17
72
14
189
43
12
10
33
1.76
118447876--118447929
21
2.6
20
77
8
63
40
7
9
42
1.65
118447907--118448225
34
9.4
35
74
10
209
43
12
10
32
1.77
118448060--118448237
35
5.1
35
76
11
125
43
12
14
30
1.82
118448378--118448428
17
3.0
16
77
11
57
72
1
0
25
0.95
118448557--118448613
10
5.7
9
75
20
51
0
15
1
82
0.75
118448558--118448614
16
3.7
15
84
11
71
0
15
1
82
0.75
118448554--118448614
32
2.0
30
87
12
88
0
18
1
80
0.80
118448731--118448784
23
2.3
24
93
6
101
0
25
9
64
1.23
118448914--118448973
24
2.5
24
86
7
79
0
33
0
66
0.92
118448902--118448973
3
24.0
3
78
16
62
0
30
0
69
0.89
118448925--118448973
13
3.9
13
75
24
52
0
36
0
63
0.95
118448942--118448970
10
2.9
10
100
0
58
0
37
0
62
0.96
118449033--118449073
19
2.3
19
84
12
52
0
31
0
68
0.90
118449028--118449075
17
2.8
16
78
12
51
0
31
0
68
0.90
118449307--118449423
30
3.9
29
79
7
110
45
1
21
31
1.62
118449419--118449453
14
2.4
15
90
4
54
28
0
2
68
1.04
118451186--118451212
4
6.8
4
100
0
54
0
22
0
77
0.76
118452895--118452932
20
1.9
20
94
0
67
63
5
0
31
1.17
118461545--118461619
18
4.2
18
91
0
105
26
22
17
33
1.96
118469114--118469451
131
2.6
131
82
3
396
34
17
18
28
1.94
118473030--118473075
14
3.1
16
78
15
53
15
4
15
65
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118478567--118478675
10
10.7
10
67
18
55
58
4
1
34
1.29
118478910--118478949
19
2.2
18
86
4
53
25
0
2
72
0.97
118480103--118480143
15
2.6
16
92
7
66
17
0
21
60
1.35
118480134--118480300
6
28.7
6
71
6
101
20
5
14
58
1.57
118480163--118480208
17
2.6
17
89
3
65
21
2
13
63
1.40
118480486--118480529
16
2.8
16
89
0
61
15
15
15
52
1.75
118487983--118488050
29
2.6
25
76
17
82
27
5
16
50
1.68
118487989--118488048
29
2.1
28
87
6
86
25
5
16
53
1.63
118488726--118488777
21
2.5
21
84
6
70
36
38
13
11
1.81
118489246--118489293
23
2.0
24
88
4
71
47
4
20
27
1.68
118490872--118490933
32
1.9
32
100
0
124
29
16
25
29
1.96
118498293--118498335
22
1.9
23
85
4
61
4
6
23
65
1.37
118502315--118502363
15
3.2
16
80
5
57
77
0
0
22
0.77
118507037--118507062
12
2.2
12
100
0
52
38
38
15
7
1.76
118513671--118513726
26
2.1
27
81
15
64
28
8
7
55
1.57
118520812--118520858
22
2.0
24
92
8
80
34
0
6
59
1.23
118525101--118525170
23
3.0
23
80
2
86
28
14
15
41
1.86
118533188--118533252
30
2.2
30
97
0
121
44
3
16
35
1.64
118541682--118541737
28
2.0
28
100
0
112
53
10
10
25
1.67
118547002--118547043
22
1.9
22
95
0
75
47
14
21
16
1.82
118562044--118562087
22
2.0
22
86
0
61
52
0
0
47
1.00
118562107--118562148
13
2.9
14
80
13
50
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118562111--118562147
16
2.3
16
86
13
58
59
0
0
40
0.97
118562177--118562236
15
3.7
15
73
16
57
48
0
3
48
1.18
118570043--118570096
22
2.5
22
78
6
56
64
1
0
33
1.04
118570531--118570562
15
2.1
15
100
0
64
46
6
6
40
1.54
118571292--118571330
21
1.9
20
84
5
51
51
2
0
46
1.14
118572824--118572852
15
1.9
15
100
0
58
0
10
0
89
0.48
118574288--118574325
19
2.0
19
90
10
60
47
5
0
47
1.24
118584202--118584229
3
9.3
3
100
0
56
67
0
32
0
0.91
118584297--118584322
6
4.3
6
100
0
52
50
0
34
15
1.45
118586071--118586108
16
2.4
16
95
0
67
15
13
15
55
1.70
118589135--118589188
26
2.1
26
83
13
67
61
3
5
29
1.36
118589507--118589557
27
1.9
27
88
4
77
54
7
3
33
1.47
118591290--118591328
19
2.2
17
86
9
51
56
0
0
43
0.99
118592592--118592629
12
3.2
12
78
14
51
34
0
0
65
0.93
118592577--118592622
19
2.4
19
76
20
51
32
0
0
67
0.91
118599879--118599947
16
4.3
16
96
0
129
39
5
34
20
1.76
118599927--118600035
45
2.6
43
83
12
138
32
6
29
32
1.83
118600129--118600215
19
4.6
20
72
20
53
58
0
0
41
0.98
118600139--118600171
11
3.0
11
91
8
50
57
0
0
42
0.98
118600116--118600227
21
5.0
21
69
21
77
55
0
0
42
1.12
118600129--118600257
56
2.3
57
80
9
147
53
3
0
42
1.19
118600542--118600693
77
2.0
77
98
0
295
40
8
8
42
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118605413--118605464
23
2.3
22
75
21
54
9
23
1
65
1.32
118611373--118611434
3
20.3
3
88
3
88
33
3
1
61
1.22
118617397--118617469
37
1.9
38
86
2
103
47
0
5
46
1.25
118617658--118617711
16
3.4
16
89
0
81
33
24
1
40
1.66
118626943--118626986
22
2.0
23
86
4
63
54
11
0
34
1.36
118627093--118627195
27
3.7
27
75
12
77
64
1
0
33
1.11
118627172--118627291
9
12.4
9
69
21
50
61
2
2
33
1.22
118627192--118627245
20
2.7
21
75
16
60
64
1
3
29
1.21
118627201--118627275
21
3.7
21
79
15
77
64
2
4
29
1.26
118627180--118627283
40
2.7
40
85
4
124
62
1
2
32
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373