genome.fa.s8.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  276  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93502291--93502643	173	2.0	173	99	0	697	20	13	24	40	1.89
93506515--93506552	19	2.0	20	85	15	53	39	23	0	36	1.55
93506782--93506952	93	1.8	93	89	0	270	29	29	19	21	1.98
93506778--93506949	46	3.7	46	76	10	179	30	28	19	21	1.98
93508968--93509227	46	5.5	48	75	13	229	30	17	27	24	1.97
93509098--93509286	98	1.9	97	85	5	256	30	17	27	24	1.98
93509053--93509294	49	5.0	49	77	8	185	28	16	28	26	1.97
93512398--93512428	3	10.3	3	100	0	62	0	32	0	67	0.91
93513294--93513363	32	2.2	32	82	12	81	30	12	17	40	1.87
93513430--93513490	29	2.1	29	85	11	81	54	3	3	39	1.33
93513398--93513495	10	9.8	10	72	18	55	54	2	4	39	1.31
93513450--93513507	10	5.5	11	82	15	61	53	1	5	39	1.33
93514935--93514999	27	2.4	28	92	5	107	29	23	18	29	1.98
93518866--93519043	27	6.6	27	84	3	205	29	28	15	26	1.96
93518887--93519042	82	1.9	81	88	3	233	29	28	15	26	1.96
93538040--93538187	40	3.7	40	96	0	260	20	26	20	31	1.98
93547183--93547223	20	1.9	22	85	14	59	14	21	34	29	1.93
93558584--93558704	60	2.0	60	91	0	197	34	19	23	22	1.96
93558816--93558944	67	1.9	67	85	3	179	25	17	31	26	1.97
93559066--93559110	20	2.1	23	88	12	69	57	8	11	22	1.60
93560043--93560124	41	2.0	41	92	0	137	26	15	21	35	1.94
93566264--93566439	67	2.6	67	97	0	325	17	29	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93566350--93566401	27	2.0	26	88	3	77	17	25	21	36	1.94
93575474--93575532	27	2.2	26	84	3	73	22	23	18	35	1.96
93578201--93578249	23	2.2	22	82	10	55	30	0	22	46	1.52
93578253--93578318	33	2.0	33	100	0	132	24	6	21	48	1.72
93588431--93588490	30	2.0	30	83	3	77	40	3	23	33	1.71
93589046--93589081	18	2.0	18	100	0	72	50	5	5	38	1.49
93606689--93606740	20	2.8	18	76	21	54	51	7	1	38	1.42
93632745--93632823	24	3.2	24	64	35	60	22	15	29	32	1.95
93632713--93632892	50	3.6	50	92	0	272	24	17	27	31	1.97
93642756--93643040	48	6.0	48	78	3	263	27	18	29	24	1.98
93642771--93643043	96	2.9	95	80	3	298	28	19	28	23	1.98
93642756--93643041	144	2.0	143	81	3	333	27	18	29	24	1.98
93645637--93645677	20	2.0	20	100	0	82	24	19	24	31	1.98
93653419--93653487	5	12.8	5	71	19	50	20	5	1	72	1.13
93656831--93656931	40	2.5	40	79	4	114	33	22	15	27	1.95
93658906--93658974	34	2.0	34	97	0	129	43	15	23	17	1.87
93662135--93662178	19	2.2	19	84	12	52	45	0	2	52	1.13
93662135--93662173	16	2.5	15	83	8	51	43	0	2	53	1.14
93662897--93662950	25	2.3	23	81	15	65	33	1	1	62	1.16
93665450--93665792	172	2.0	171	89	2	517	36	7	14	41	1.74
93667967--93668000	15	2.3	15	89	0	50	58	8	14	17	1.61
93669538--93669571	15	2.3	15	89	0	50	17	14	8	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93671472--93671655	62	3.0	62	95	0	323	41	20	4	33	1.74
93672889--93672946	11	5.1	11	85	6	71	81	12	3	3	0.95
93672889--93672946	23	2.5	22	83	10	73	81	12	3	3	0.95
93672889--93672946	6	10.2	6	71	17	52	81	12	3	3	0.95
93673734--93673929	108	1.8	108	92	0	329	25	17	10	46	1.80
93674379--93675239	95	9.0	95	96	0	1535	30	19	21	28	1.98
93675044--93675467	231	1.8	228	93	1	740	29	19	21	28	1.98
93675275--93676134	95	9.0	95	96	0	1515	30	20	21	28	1.98
93674339--93676268	895	2.2	895	99	0	3772	29	20	21	28	1.98
93676034--93676952	134	6.8	134	94	1	1523	27	20	22	29	1.98
93676101--93676873	46	17.2	45	63	13	236	26	20	23	29	1.99
93676034--93676952	270	3.4	268	94	1	1577	27	20	22	29	1.98
93676034--93676952	404	2.3	404	95	0	1649	27	20	22	29	1.98
93676309--93677329	270	3.9	260	87	4	788	28	19	23	28	1.98
93677083--93677264	44	4.2	44	69	5	109	27	21	25	25	2.00
93676841--93677329	130	3.8	130	91	1	748	29	19	23	27	1.98
93677014--93677328	43	7.3	42	66	7	130	28	19	25	26	1.98
93678379--93678413	11	3.2	11	88	11	54	0	54	0	45	0.99
93678877--93678950	3	24.3	3	70	8	51	31	4	5	59	1.38
93678916--93678961	23	2.0	23	83	8	58	32	2	8	56	1.42
93679195--93679231	19	1.9	19	88	0	56	40	2	5	51	1.39
93681272--93681379	10	10.6	10	73	16	80	34	3	0	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93681315--93681368	9	5.7	9	81	18	65	31	3	0	64	1.11
93681316--93681368	19	2.7	20	83	13	74	30	3	0	66	1.10
93683231--93683266	3	12.0	3	100	0	72	33	0	0	66	0.92
93683951--93683978	12	2.3	12	100	0	56	25	14	25	35	1.93
93689186--93689223	19	2.0	20	84	5	51	57	7	18	15	1.62
93699254--93699360	40	2.7	40	94	0	178	30	21	28	19	1.98
93707777--93707883	40	2.7	40	92	2	171	30	20	28	20	1.98
93710440--93710537	44	2.3	42	87	8	144	21	18	27	32	1.96
93716397--93716574	85	2.1	85	97	0	338	38	8	26	26	1.85
93717843--93718437	47	12.6	46	89	2	794	33	9	28	27	1.89
93722141--93722170	6	5.0	6	100	0	60	83	0	0	16	0.65
93726631--93726733	49	2.1	48	83	5	127	24	19	30	26	1.98
93730833--93730937	43	2.4	43	95	0	192	22	16	35	25	1.95
93730922--93730992	29	2.4	29	88	4	99	26	16	30	25	1.97
93731386--93731499	40	2.8	40	82	5	140	26	20	26	27	1.99
93734691--93734815	47	2.7	47	94	2	216	32	8	29	30	1.86
93734984--93735062	37	2.1	37	90	0	122	24	18	31	25	1.98
93736722--93736761	21	2.0	21	90	5	64	20	27	40	12	1.88
93738729--93739633	40	22.6	40	95	0	1542	25	27	18	28	1.98
93744685--93744729	24	1.9	24	81	4	56	17	22	17	42	1.89
93746104--93746355	55	4.7	55	80	8	258	35	18	25	21	1.95
93746108--93746308	108	1.8	110	90	6	329	32	18	26	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93752954--93753022	28	2.4	28	85	2	84	23	33	14	28	1.94
93753518--93753557	21	1.9	21	89	0	62	35	22	10	32	1.87
93758144--93758328	79	2.3	81	84	7	236	24	22	27	25	2.00
93758144--93758328	40	4.6	41	84	7	231	24	22	27	25	2.00
93758145--93758361	79	2.7	79	80	7	192	25	21	27	24	1.99
93769110--93769155	13	3.7	13	75	19	53	19	0	15	65	1.28
93769756--93770012	55	4.8	55	75	10	207	36	15	25	22	1.93
93770202--93770232	16	1.9	16	100	0	62	45	0	19	35	1.51
93772128--93772170	23	1.9	23	85	4	61	46	23	4	25	1.71
93780385--93780460	40	1.9	40	84	15	104	26	23	15	34	1.95
93783496--93783693	39	5.1	39	91	0	279	24	29	20	25	1.99
93791396--93791590	39	5.0	39	87	0	239	25	27	18	28	1.98
93811421--93811452	14	2.4	13	90	10	55	62	12	6	18	1.50
93816969--93817088	56	2.1	56	96	0	222	45	10	23	21	1.82
93818219--93818403	40	4.7	40	79	7	191	24	23	27	24	2.00
93818275--93818436	79	2.1	79	80	6	177	25	20	27	25	1.99
93823974--93824010	18	2.1	18	89	0	56	37	13	8	40	1.74
93824302--93824386	34	2.5	34	90	1	127	31	21	16	30	1.95
93827431--93827492	27	2.3	27	91	0	97	33	14	12	38	1.84
93827446--93827895	27	16.8	26	79	9	358	32	10	19	37	1.86
93827445--93827916	80	5.9	78	79	8	425	31	10	19	37	1.86
93827445--93827916	107	4.4	106	80	9	489	31	10	19	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93827445--93827916	54	8.8	52	77	10	402	31	10	19	37	1.86
93827987--93828046	30	2.0	30	96	0	111	35	16	31	16	1.92
93828267--93828358	28	3.3	28	82	0	76	27	38	15	19	1.92
93839000--93839087	27	3.3	26	85	3	86	29	17	14	38	1.89
93839039--93839497	27	17.2	26	80	6	316	32	10	19	37	1.85
93839039--93839491	54	8.5	53	79	6	360	32	10	18	38	1.85
93839039--93839497	81	5.7	80	80	4	496	32	10	19	37	1.85
93839863--93839982	28	4.3	28	88	0	159	25	34	17	22	1.96
93839876--93839981	56	1.9	56	92	0	176	25	33	16	23	1.96
93842826--93843272	27	16.6	27	84	0	448	30	8	21	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373