genome.fa.s8.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  168  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56206620--56206844	40	5.7	40	88	3	285	28	28	19	22	1.98
56214453--56214675	40	5.6	40	85	3	227	26	27	21	25	1.99
56214607--56214684	40	1.9	41	82	10	97	26	28	21	23	1.99
56218173--56218428	50	5.3	50	77	8	212	26	27	17	27	1.98
56229972--56230051	34	2.4	34	81	8	83	26	20	22	31	1.98
56230325--56230377	27	2.0	27	88	0	79	33	16	15	33	1.90
56234289--56234367	37	2.1	37	90	0	122	25	31	18	24	1.98
56234488--56235449	49	20.0	49	92	2	1546	29	30	8	31	1.87
56234486--56235452	96	10.0	98	92	3	1565	29	30	8	31	1.87
56234486--56235449	145	6.7	144	94	2	1571	29	30	8	31	1.87
56239219--56239374	40	3.9	40	85	0	177	26	27	21	24	1.99
56239683--56239761	29	2.7	29	86	5	106	27	32	15	24	1.95
56241664--56241742	37	2.1	37	90	0	122	25	31	18	24	1.98
56241861--56242295	47	9.1	47	89	4	629	28	30	9	31	1.89
56245416--56245601	40	4.7	40	85	5	209	26	21	26	25	2.00
56245469--56245634	80	2.1	79	81	7	185	28	19	25	25	1.99
56253399--56253584	40	4.7	40	86	5	218	26	22	26	25	2.00
56253452--56253617	80	2.1	79	81	9	187	28	20	26	24	1.99
56258117--56258314	43	4.6	43	92	0	306	32	31	23	12	1.91
56258311--56258414	38	2.7	38	84	0	127	32	25	19	22	1.97
56262928--56262962	18	1.9	18	94	0	61	40	2	2	54	1.30
56281430--56281534	43	2.5	43	81	7	133	30	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56283532--56283619	28	3.3	27	88	4	133	36	25	21	17	1.94
56285024--56285233	40	5.3	40	92	0	314	26	28	20	24	1.99
56285027--56285286	80	3.3	80	86	2	265	25	28	21	24	1.99
56285022--56285286	120	2.2	118	81	4	307	26	27	21	24	1.99
56292956--56293165	40	5.3	40	92	0	314	26	28	20	24	1.99
56292959--56293218	80	3.3	80	86	2	265	25	28	21	24	1.99
56292954--56293218	120	2.2	118	81	4	307	26	27	21	24	1.99
56309965--56310134	46	3.7	46	73	16	161	22	21	27	28	1.99
56324732--56325075	94	3.7	94	80	9	348	21	29	20	27	1.98
56324729--56325089	47	7.7	45	73	12	246	21	29	20	27	1.98
56332257--56332615	47	7.7	45	72	10	201	21	29	20	28	1.98
56341820--56341996	52	3.5	51	89	4	252	27	29	14	28	1.95
56343967--56344061	25	3.8	25	77	4	84	30	20	18	30	1.96
56352772--56352870	34	2.9	33	77	4	99	27	23	23	26	2.00
56353831--56354059	43	5.3	42	88	6	300	29	20	17	32	1.95
56360124--56360347	43	5.2	43	86	6	285	30	19	16	33	1.94
56361265--56361385	61	2.0	61	95	0	215	32	18	9	39	1.83
56366498--56366591	40	2.4	39	82	10	111	27	14	27	29	1.96
56382299--56382380	34	2.5	33	74	7	85	28	21	20	29	1.98
56389677--56389752	28	2.7	28	91	0	125	34	11	25	28	1.91
56391660--56391842	40	4.6	39	82	6	170	24	21	27	26	1.99
56410179--56410314	40	3.4	40	88	2	175	25	27	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56410212--56410346	40	3.4	40	91	3	193	28	25	20	25	1.99
56414347--56414391	22	2.0	22	83	8	56	20	6	20	53	1.67
56418134--56418173	20	2.0	20	100	0	80	30	25	25	20	1.99
56418700--56418801	27	3.9	26	83	9	129	33	15	22	28	1.95
56418881--56418914	14	2.4	14	90	0	50	20	8	32	38	1.84
56419291--56419393	32	3.2	31	73	5	80	27	19	22	31	1.98
56423004--56423056	26	2.0	27	85	3	72	35	18	15	30	1.92
56428870--56429045	46	3.8	46	75	15	173	20	19	29	30	1.97
56432631--56432680	24	2.1	24	88	0	73	40	18	12	30	1.86
56435499--56435676	27	6.6	27	83	3	196	26	14	28	30	1.95
56435500--56435655	82	1.9	81	88	3	233	26	15	28	29	1.96
56441643--56441720	29	2.7	28	82	11	95	24	16	30	28	1.97
56441823--56441888	29	2.3	29	84	5	80	27	9	31	31	1.88
56441675--56442000	174	1.9	174	88	1	501	30	14	24	30	1.95
56446797--56446972	27	6.5	27	83	3	201	27	14	27	30	1.95
56446798--56446953	82	1.9	81	88	3	233	26	15	28	29	1.96
56446794--56446972	82	2.2	81	82	3	225	27	15	27	30	1.96
56458963--56459146	49	3.7	48	82	5	233	29	26	17	26	1.98
56458958--56459144	100	1.9	99	90	1	302	29	25	19	26	1.98
56459063--56459139	26	3.1	26	62	24	65	32	28	14	24	1.94
56466558--56466692	25	5.4	23	81	9	85	28	22	20	28	1.98
56466571--56466718	26	5.8	25	83	8	176	28	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56466558--56466718	51	3.2	50	89	8	231	27	22	20	28	1.99
56466768--56466842	20	3.8	20	87	6	102	34	17	9	38	1.82
56488909--56488974	33	2.0	33	96	0	123	40	18	7	33	1.79
56498323--56498377	28	2.0	28	88	0	83	21	18	38	21	1.94
56498695--56499061	27	13.7	25	74	12	252	38	20	9	31	1.84
56498710--56499061	54	6.6	54	83	6	353	38	20	9	31	1.85
56498717--56499020	80	3.8	79	82	7	373	37	19	9	32	1.85
56498710--56499061	107	3.3	107	82	7	369	38	20	9	31	1.85
56499042--56499174	54	2.5	54	93	0	221	38	16	12	32	1.87
56499042--56499174	27	4.9	28	77	6	130	38	16	12	32	1.87
56501844--56502069	50	4.6	47	78	12	213	25	18	25	30	1.98
56501840--56502081	101	2.4	98	82	6	265	25	18	25	30	1.98
56502169--56502220	27	2.0	26	81	11	61	38	1	23	36	1.66
56508893--56509131	31	7.7	31	93	0	408	28	25	15	30	1.96
56509155--56509317	42	3.9	42	96	0	292	34	18	15	31	1.92
56509316--56509411	25	3.9	24	79	14	81	26	22	23	27	2.00
56509330--56509413	25	3.4	24	80	9	98	26	22	22	28	1.99
56510339--56510424	27	3.1	27	80	14	104	36	10	15	38	1.81
56510426--56510552	27	4.7	27	83	2	166	29	8	21	40	1.83
56510336--56510505	54	3.1	53	76	9	137	33	10	17	38	1.84
56510374--56510585	81	2.6	81	79	7	198	30	10	18	40	1.84
56510427--56510585	54	2.9	54	80	3	160	30	11	20	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56510588--56510716	27	4.8	27	92	1	179	39	6	24	30	1.79
56515031--56515103	23	3.1	23	86	7	103	27	21	20	30	1.98
56515030--56515110	24	3.4	24	86	8	112	28	20	22	28	1.99
56523213--56523247	14	2.5	14	95	0	61	14	8	37	40	1.76
56523272--56523303	15	2.1	15	94	0	55	65	0	6	28	1.16
56523278--56523358	37	2.2	37	97	0	153	56	0	2	40	1.12
56525249--56525856	47	13.2	47	84	8	682	28	29	9	33	1.88
56525249--56525856	141	4.4	141	87	6	857	28	29	9	33	1.88
56525583--56525648	34	1.9	34	100	0	132	30	30	6	33	1.82
56525536--56525695	81	2.0	81	94	0	284	28	28	10	33	1.89
56525684--56525759	22	3.3	22	70	20	66	27	28	10	32	1.90
56525660--56525737	25	3.2	25	68	17	65	29	28	6	35	1.82
56525348--56525856	269	1.9	269	90	0	822	28	28	9	33	1.88
56528876--56529029	28	5.5	28	68	6	123	28	32	19	19	1.96
56528876--56529054	56	3.2	56	97	0	340	29	31	19	19	1.97
56528903--56529051	28	5.3	28	68	12	126	30	28	19	21	1.98
56529268--56529494	40	5.7	40	93	0	382	26	29	23	20	1.99
56529553--56529664	38	2.9	38	85	0	143	25	28	16	29	1.96
56531616--56532238	47	13.3	47	91	0	951	29	29	8	33	1.86
56538086--56538134	23	2.1	23	92	0	80	34	14	14	36	1.86
56538268--56538945	241	2.8	241	95	0	1230	33	17	14	33	1.90
56539065--56539192	9	13.6	9	70	9	85	45	19	1	33	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56539082--56539159	39	2.0	39	89	0	120	43	20	1	34	1.60
56540268--56540370	27	3.8	27	89	0	161	39	6	21	32	1.79
56540347--56540523	54	3.3	54	76	7	182	29	9	22	38	1.85
56540430--56540501	26	2.7	26	79	12	74	30	8	23	37	1.84
56540347--56540515	27	6.3	27	76	11	134	28	9	21	39	1.85
56542484--56542626	6	23.3	6	75	14	114	48	12	18	20	1.80
56542493--56542603	43	2.6	43	91	0	168	46	11	19	21	1.82
56542492--56542626	37	3.5	37	76	11	135	48	11	18	21	1.80
56542493--56542626	43	3.3	41	77	12	132	48	11	18	20	1.80
56543130--56543404	27	10.2	27	86	0	289	40	8	21	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373