genome.fa.s8.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  143  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47378620--47378728	37	2.9	37	93	0	182	27	31	18	22	1.97
47378875--47379175	48	6.1	48	85	8	417	33	25	4	36	1.76
47378875--47379175	102	3.1	98	90	5	464	33	25	4	36	1.76
47378878--47379172	150	2.0	151	92	2	495	33	25	4	36	1.76
47382522--47382635	43	2.7	42	78	5	131	28	16	24	29	1.97
47382514--47382635	42	2.9	42	80	4	147	28	15	24	31	1.96
47383352--47383385	15	2.3	15	89	0	50	11	2	41	44	1.56
47394847--47395070	45	4.8	44	76	13	166	26	18	29	25	1.98
47394936--47395068	49	2.7	50	79	11	157	26	21	29	23	1.99
47399585--47399739	42	3.7	42	78	6	136	28	17	24	29	1.97
47400641--47400709	21	3.0	23	76	20	72	28	14	15	40	1.87
47406200--47406251	17	3.0	17	80	8	52	69	1	7	21	1.24
47406213--47406256	17	2.6	17	81	0	52	70	0	6	22	1.11
47410153--47410259	26	4.2	26	91	2	180	36	24	7	31	1.83
47410153--47410259	51	2.1	52	94	1	189	36	24	7	31	1.83
47420038--47420136	42	2.4	42	85	0	135	27	33	24	15	1.95
47420061--47420152	42	2.2	42	84	2	112	26	28	23	21	1.99
47427931--47428079	40	3.7	40	91	3	246	25	27	22	24	2.00
47435555--47435726	38	4.6	38	87	7	237	27	28	22	22	1.99
47435555--47435724	71	2.3	75	86	7	240	27	28	21	22	1.99
47436172--47436197	13	2.0	13	100	0	52	38	23	0	38	1.55
47443383--47443546	40	4.1	40	90	3	233	26	28	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47444789--47444912	52	2.4	52	91	1	194	15	21	10	52	1.72
47455489--47455647	41	4.0	40	71	23	122	22	22	27	27	1.99
47463677--47463836	41	3.9	41	78	12	177	21	21	28	27	1.99
47465577--47465613	18	2.1	19	90	10	60	29	8	27	35	1.85
47469240--47469411	93	1.8	93	93	2	301	28	29	20	21	1.98
47469233--47469408	46	3.8	46	78	14	200	29	28	20	21	1.98
47469241--47469427	46	4.0	44	73	16	139	28	28	20	21	1.98
47476808--47476979	93	1.8	93	93	2	301	27	29	21	20	1.98
47476809--47476976	46	3.6	46	77	15	193	28	29	21	20	1.98
47479906--47479947	21	2.0	20	86	13	59	38	0	11	50	1.40
47482482--47482639	38	4.1	38	85	3	183	29	24	22	23	1.99
47484299--47484443	40	3.6	40	94	1	238	23	23	27	25	2.00
47484299--47484475	80	2.2	80	86	5	234	25	22	26	25	2.00
47484702--47484745	22	2.0	21	83	16	54	31	18	13	36	1.90
47492253--47492397	40	3.6	40	95	1	247	22	23	28	25	1.99
47492253--47492429	80	2.2	80	87	5	243	24	22	27	25	2.00
47492655--47492698	22	2.0	21	83	16	54	31	18	13	36	1.90
47500198--47500296	42	2.4	42	85	0	135	15	24	33	27	1.95
47503770--47503808	20	2.0	19	85	5	51	33	5	15	46	1.68
47510234--47510341	26	4.2	26	93	0	189	32	7	24	36	1.83
47516139--47516195	28	1.9	28	82	10	69	17	35	29	17	1.93
47528883--47529051	41	4.1	41	76	8	139	26	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47528909--47529052	41	3.5	41	81	5	159	27	27	21	23	1.99
47545864--47546021	43	3.7	43	73	7	133	26	15	25	32	1.96
47550379--47550480	34	3.0	34	98	0	195	34	8	24	32	1.86
47553653--47553828	46	3.8	46	78	12	198	21	21	29	28	1.98
47553650--47553821	93	1.8	93	93	0	299	21	21	29	27	1.99
47556156--47556267	43	2.6	43	81	8	131	28	18	20	32	1.96
47556158--47556267	42	2.6	42	81	7	125	28	19	20	31	1.97
47562686--47562810	29	4.3	29	85	1	171	31	28	13	26	1.94
47564409--47564654	122	2.0	122	100	0	492	23	37	14	23	1.92
47570249--47570442	40	4.9	39	87	3	253	22	29	24	24	1.99
47580051--47580174	27	4.6	27	86	2	149	25	16	29	29	1.96
47580051--47580174	55	2.3	54	85	1	158	25	16	29	29	1.96
47603815--47603936	27	4.5	27	86	2	145	26	15	28	29	1.96
47603815--47603936	55	2.2	54	85	1	154	26	15	28	29	1.96
47605294--47605486	40	4.8	40	88	2	262	20	28	26	24	1.99
47605294--47605486	81	2.4	80	85	3	262	20	28	26	24	1.99
47607820--47607866	19	2.5	19	86	6	60	25	19	10	44	1.82
47614327--47614606	50	5.6	50	80	3	276	25	16	26	31	1.96
47614756--47614797	19	2.2	19	95	0	75	26	4	28	40	1.76
47617753--47617927	48	3.6	50	83	5	180	24	32	18	25	1.97
47617943--47618112	94	1.8	92	84	5	234	23	24	21	30	1.99
47617654--47618110	49	9.6	48	74	12	254	25	28	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47625476--47625696	40	5.6	40	80	2	241	24	25	23	25	2.00
47629930--47629996	32	2.1	32	100	0	134	37	14	16	31	1.89
47630202--47630252	26	2.0	26	84	0	66	39	25	17	17	1.92
47634836--47634951	58	2.0	58	98	0	223	44	16	13	25	1.84
47637734--47638419	45	14.8	45	70	10	297	35	16	18	29	1.93
47637947--47638316	96	3.9	96	77	5	333	35	18	18	28	1.94
47637972--47638140	89	1.9	89	88	0	257	34	17	18	28	1.94
47637744--47638358	141	4.4	141	70	9	426	35	16	19	29	1.93
47640363--47640404	20	2.1	20	100	0	84	23	23	26	26	2.00
47641526--47641583	25	2.3	25	84	0	80	32	24	15	27	1.95
47647441--47647571	48	2.7	50	82	13	161	29	20	25	23	1.99
47664885--47664919	18	2.0	18	88	5	54	28	14	20	37	1.91
47667005--47667140	46	3.0	43	72	14	105	30	28	18	22	1.97
47668722--47668834	29	4.0	29	80	2	122	30	27	13	28	1.94
47668722--47668834	57	2.0	57	82	3	138	30	27	13	28	1.94
47672421--47672484	8	8.1	8	85	1	67	7	23	20	48	1.75
47672971--47673003	13	2.6	13	90	4	50	48	12	0	39	1.40
47675961--47675987	4	6.8	4	100	0	54	77	0	0	22	0.76
47683968--47684077	29	3.9	29	81	7	127	24	28	19	28	1.98
47695922--47696149	45	5.0	45	76	10	180	28	20	28	22	1.99
47695923--47696183	139	1.9	138	81	7	314	29	19	27	23	1.98
47698557--47698650	40	2.3	40	82	7	111	32	27	14	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47702023--47702082	25	2.4	25	80	0	66	33	18	23	25	1.97
47705598--47705749	42	3.6	42	84	5	189	30	24	14	30	1.95
47713344--47713382	17	2.3	17	91	8	62	64	0	0	35	0.94
47713336--47713381	9	5.3	9	80	15	53	60	0	0	39	0.97
47713386--47713425	17	2.4	17	79	4	55	42	0	0	57	0.98
47716352--47716388	17	2.1	17	90	5	56	64	0	0	35	0.94
47716347--47716388	10	4.4	9	82	17	50	64	0	0	35	0.94
47716487--47716552	29	2.2	29	86	5	87	36	1	3	59	1.22
47716528--47716575	21	2.3	22	85	10	73	35	6	4	54	1.45
47716860--47716897	20	1.9	20	88	0	58	34	34	5	26	1.79
47718393--47718568	46	3.8	46	78	12	198	30	29	19	20	1.97
47718402--47718571	93	1.8	93	94	0	304	28	29	20	21	1.98
47725715--47725742	12	2.3	12	100	0	56	25	32	0	42	1.55
47730263--47730401	60	2.3	60	84	8	176	28	19	25	27	1.99
47730301--47730413	28	3.9	28	71	18	97	27	20	25	26	1.99
47734823--47734954	65	2.0	66	97	1	248	45	10	13	30	1.77
47736077--47736118	18	2.3	18	87	4	57	38	7	9	45	1.64
47742382--47742416	17	2.1	18	89	10	56	48	8	11	31	1.69
47743522--47743717	57	3.4	57	94	0	338	27	15	18	37	1.92
47746554--47746618	32	2.0	32	90	0	103	52	21	4	21	1.65
47746817--47746872	22	2.5	22	97	0	103	26	26	30	16	1.96
47751803--47752002	49	4.2	47	71	16	155	28	21	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47751796--47751924	44	2.8	45	75	14	145	24	20	29	25	1.99
47751796--47751972	93	1.9	93	89	6	279	26	20	28	24	1.99
47753759--47753785	6	4.5	6	100	0	54	48	0	33	18	1.49
47755106--47755147	19	2.2	20	83	12	52	28	2	19	50	1.60
47760659--47760731	30	2.4	31	90	6	114	12	10	16	60	1.59
47764039--47764073	15	2.4	14	90	9	61	71	0	0	28	0.86
47767011--47767089	37	2.1	37	88	4	115	25	30	20	24	1.98
47767208--47767459	47	5.4	47	99	0	477	30	30	7	30	1.86
47772505--47772574	35	2.0	35	100	0	140	48	11	20	20	1.79
47777021--47777062	3	14.0	3	94	0	75	66	2	0	30	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373