genome.fa.s8.2.7.7.80.10.50.1000.283.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  283  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96117401--96117503	43	2.4	43	100	0	206	26	35	15	22	1.94
96119515--96119753	47	5.1	47	91	0	361	28	31	9	30	1.89
96120017--96120046	14	2.1	14	100	0	60	36	23	0	40	1.55
96119869--96120351	47	10.1	47	88	4	669	29	29	8	32	1.86
96139746--96139793	24	2.0	25	87	4	71	52	0	2	45	1.12
96139746--96139794	20	2.5	19	81	15	55	51	0	2	46	1.12
96143305--96143376	31	2.3	31	80	4	83	18	11	48	22	1.79
96148930--96148992	22	2.9	22	85	2	92	12	42	23	20	1.86
96157683--96157775	43	2.2	43	88	1	134	40	9	17	32	1.82
96163524--96163594	18	3.9	18	70	9	63	42	15	9	32	1.80
96163719--96163821	47	2.2	47	92	0	170	41	25	18	14	1.88
96164015--96164062	19	2.5	20	74	16	55	33	8	0	58	1.28
96167894--96168018	42	2.9	42	81	10	121	34	24	14	27	1.94
96167881--96168034	43	3.6	42	80	10	161	32	24	17	25	1.97
96167873--96168030	44	3.7	41	75	13	133	31	25	17	25	1.97
96168872--96168936	32	2.1	32	91	2	105	30	10	1	56	1.42
96168931--96168982	26	2.0	25	82	10	61	42	17	0	40	1.49
96169964--96170095	34	3.9	34	84	2	167	27	24	19	28	1.99
96169964--96170096	68	2.0	68	87	3	196	27	24	19	28	1.98
96170094--96170143	18	2.8	18	78	0	64	40	16	16	28	1.89
96170242--96170307	26	2.5	26	87	2	96	37	27	15	19	1.92
96170453--96170569	27	4.4	25	77	10	99	20	17	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96170453--96170566	54	2.1	54	80	9	126	20	17	20	42	1.90
96170561--96170796	27	8.8	26	92	1	328	36	16	15	31	1.90
96170561--96170796	54	4.4	54	94	0	418	36	16	15	31	1.90
96170561--96170796	81	2.9	81	94	0	409	36	16	15	31	1.90
96179072--96179270	43	4.7	42	73	10	154	26	15	26	31	1.96
96179072--96179270	42	4.7	42	73	7	161	26	15	26	31	1.96
96183583--96183674	42	2.2	43	84	2	114	30	26	13	30	1.93
96191758--96191935	27	6.6	27	83	3	205	26	15	28	29	1.96
96191759--96191914	82	1.9	81	88	3	233	26	15	28	29	1.96
96191755--96191935	82	2.2	81	83	2	229	27	15	27	29	1.96
96207153--96207359	47	4.3	47	81	5	191	30	28	15	25	1.96
96209668--96209726	31	1.9	31	86	13	86	50	8	5	35	1.55
96211334--96211385	23	2.2	24	75	24	58	65	3	1	28	1.21
96217260--96217307	25	1.9	25	91	0	78	60	4	4	31	1.35
96221352--96221385	17	2.0	17	100	0	68	17	17	17	47	1.84
96221869--96221903	16	2.1	17	94	5	63	74	0	0	25	0.82
96222476--96222525	23	2.2	24	78	10	59	40	0	8	52	1.31
96222483--96222526	23	1.9	23	90	0	70	40	0	9	50	1.34
96222526--96222565	19	2.3	16	87	12	53	57	0	7	35	1.27
96222573--96222629	7	8.0	7	98	2	105	71	0	0	28	0.86
96222717--96222769	19	2.8	19	81	16	65	16	7	0	75	1.02
96222725--96222787	18	3.4	18	77	12	56	17	6	1	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96222717--96222770	20	2.8	21	75	16	62	18	7	0	74	1.05
96222812--96222860	23	2.2	22	81	3	53	40	2	6	51	1.38
96222870--96223111	36	7.0	35	70	19	136	44	2	1	52	1.22
96222974--96223007	14	2.3	15	95	5	61	58	2	0	38	1.13
96223011--96223048	19	2.0	20	94	5	69	47	2	0	50	1.15
96223011--96223052	21	2.0	20	90	4	66	45	2	0	52	1.13
96223101--96223130	13	2.3	13	100	0	60	46	0	0	53	1.00
96223090--96223153	20	3.1	21	75	18	64	45	0	0	54	0.99
96223537--96223608	28	2.6	28	82	12	87	52	2	0	44	1.15
96223573--96223627	21	2.6	22	85	5	69	54	3	1	40	1.28
96223584--96223651	34	2.0	34	91	5	111	57	2	1	38	1.23
96223623--96223691	23	2.9	23	82	14	86	53	1	0	44	1.09
96223612--96223688	23	3.2	22	75	21	75	55	2	0	41	1.13
96223612--96223710	48	2.1	49	84	7	132	55	2	1	41	1.18
96223705--96223743	4	9.5	4	88	5	60	74	0	2	23	0.94
96229881--96229923	21	2.1	20	95	4	77	83	0	0	16	0.64
96229884--96229923	16	2.4	17	91	4	64	82	0	0	17	0.67
96234342--96234383	17	2.4	17	88	11	59	80	2	2	14	0.90
96237170--96237232	25	2.4	26	80	17	76	60	1	4	33	1.27
96239484--96239525	21	2.0	20	90	4	66	30	28	19	21	1.97
96251081--96251455	40	9.4	40	86	2	488	22	20	29	27	1.99
96251081--96251455	79	4.7	79	86	4	477	22	20	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96255440--96255844	47	8.6	47	92	2	659	33	7	30	28	1.86
96258268--96258384	47	2.5	47	98	1	227	28	19	29	22	1.98
96258268--96258573	47	6.5	47	78	11	188	27	18	30	22	1.98
96258268--96258674	47	8.6	46	73	14	175	27	19	29	23	1.98
96273516--96273544	13	2.2	13	100	0	58	24	31	31	13	1.94
96280656--96280862	27	7.6	27	88	4	281	27	13	27	31	1.94
96280656--96280862	55	3.8	55	92	1	335	27	13	27	31	1.94
96288882--96289088	27	7.6	27	91	3	315	26	14	28	30	1.95
96288882--96289088	55	3.8	55	96	0	360	26	14	28	30	1.95
96291496--96291541	20	2.3	20	82	14	60	28	28	17	26	1.98
96291508--96291551	19	2.2	20	84	4	54	34	25	18	22	1.96
96292970--96293024	25	2.3	22	76	14	56	63	0	34	1	1.05
96294990--96295028	20	1.9	20	89	5	60	10	23	15	51	1.73
96296729--96296906	27	6.6	27	80	3	160	28	29	16	25	1.97
96296750--96296905	82	1.9	81	84	3	206	28	29	16	25	1.97
96302727--96302910	40	4.6	40	86	2	165	25	22	27	25	2.00
96302688--96302912	80	2.8	79	81	3	227	24	22	27	25	2.00
96302763--96302945	79	2.3	80	81	1	217	25	21	27	25	2.00
96310630--96310813	40	4.6	40	86	2	165	25	22	27	25	2.00
96310591--96310815	80	2.8	79	81	3	227	24	22	27	25	2.00
96310666--96310848	79	2.3	80	81	1	217	25	21	27	25	2.00
96318775--96318850	38	2.0	38	97	0	143	32	10	5	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96323557--96323588	14	2.1	16	88	11	50	46	0	15	37	1.46
96326157--96326842	343	2.0	343	93	0	1185	30	11	22	36	1.90
96333042--96333166	47	2.7	46	80	7	137	21	28	21	28	1.99
96335104--96335137	18	1.9	18	88	5	52	32	5	0	61	1.20
96338570--96338794	49	4.7	49	72	10	189	25	19	31	23	1.98
96338763--96338833	34	2.1	34	81	5	81	26	18	29	25	1.98
96339923--96340018	40	2.4	41	89	1	140	18	21	42	16	1.89
96344477--96344508	16	2.0	16	93	0	55	40	40	6	12	1.68
96345029--96345075	20	2.3	20	83	16	62	34	0	2	63	1.06
96345030--96345075	21	2.3	21	85	14	62	34	0	2	63	1.07
96345114--96345144	13	2.3	14	94	5	55	41	0	6	51	1.27
96345226--96345257	12	2.7	12	95	0	55	37	0	0	62	0.95
96345273--96345392	26	4.7	24	75	14	89	34	1	6	57	1.35
96367180--96367226	20	2.3	20	83	16	62	34	0	2	63	1.06
96367181--96367226	21	2.3	21	85	14	62	34	0	2	63	1.07
96367265--96367295	13	2.3	14	94	5	55	41	0	6	51	1.27
96367282--96367333	24	2.2	24	83	13	63	32	9	3	53	1.51
96367362--96367403	20	2.1	20	82	8	50	33	2	0	64	1.07
96367377--96367407	12	2.7	12	95	5	55	38	0	0	61	0.96
96367423--96367542	26	4.7	24	75	14	89	34	1	6	57	1.35
96367554--96367596	21	2.1	20	86	4	59	34	11	4	48	1.60
96368840--96369001	38	4.3	38	90	0	252	22	22	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96368994--96369118	43	2.9	43	92	0	196	15	25	30	28	1.96
96373185--96373339	42	3.7	42	84	5	168	29	15	25	29	1.96
96373511--96373540	15	1.9	16	93	6	53	33	0	26	40	1.57
96379626--96379669	6	7.2	6	92	2	52	15	25	0	59	1.37
96379627--96379669	12	3.5	12	87	3	59	16	25	0	58	1.38
96379626--96379668	18	2.3	19	88	4	61	16	25	0	58	1.38
96384014--96384144	29	4.5	29	92	1	192	25	33	16	24	1.95
96394799--96394899	29	3.5	29	89	1	141	30	28	13	26	1.94
96401919--96402021	29	3.6	29	85	5	129	24	16	33	26	1.96
96409810--96409912	29	3.6	29	90	2	145	24	16	33	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373