genome.fa.s8.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  138  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45607609--45607863	55	4.8	51	79	7	174	36	16	24	21	1.94
45607937--45607981	23	1.9	24	90	4	74	42	11	24	22	1.86
45608060--45608090	16	1.9	16	93	0	53	41	0	22	35	1.54
45619130--45619158	11	2.5	12	88	11	51	24	0	27	48	1.51
45620481--45620602	28	4.4	28	88	2	165	33	27	11	27	1.91
45627399--45627427	11	2.5	12	88	11	51	24	0	27	48	1.51
45628748--45628870	28	4.4	28	88	2	167	33	27	12	26	1.92
45636244--45636397	43	3.6	42	74	13	154	25	16	28	29	1.97
45637916--45638003	34	2.6	33	87	7	122	28	20	20	30	1.98
45638310--45638359	23	2.2	23	86	13	68	42	18	14	26	1.87
45638422--45638510	27	3.3	27	80	3	108	21	20	19	39	1.93
45638503--45638630	27	4.7	27	93	0	193	39	14	14	32	1.85
45643093--45643229	46	3.0	46	82	0	166	27	29	8	34	1.87
45643203--45643394	47	4.1	47	88	5	271	25	30	12	31	1.93
45643923--45643962	20	2.0	20	85	0	53	45	7	5	42	1.54
45652687--45652743	22	2.6	22	85	0	78	21	24	33	21	1.97
45654387--45654777	50	7.8	50	72	4	277	30	24	17	26	1.97
45654387--45654777	150	2.6	151	90	0	613	30	24	17	26	1.97
45655124--45655170	19	2.3	20	82	10	60	48	14	0	36	1.44
45659480--45659636	43	3.7	42	73	10	140	28	24	19	28	1.99
45660776--45660804	14	2.0	15	93	6	51	51	20	0	27	1.47
45662415--45662591	27	6.6	27	81	4	151	30	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45662436--45662590	55	2.9	55	80	5	181	30	28	15	25	1.96
45662436--45662590	82	1.9	80	85	5	213	30	28	15	25	1.96
45667826--45667901	38	2.0	38	100	0	152	31	13	23	31	1.93
45669090--45669234	40	3.6	39	84	6	173	25	24	26	24	2.00
45675824--45675899	38	2.0	38	97	0	143	30	13	25	31	1.93
45677086--45677230	40	3.6	40	85	4	193	26	24	25	24	2.00
45678621--45678755	46	3.0	45	84	6	166	27	18	30	23	1.98
45678819--45678995	49	3.6	49	78	7	166	25	20	29	23	1.99
45681218--45681358	44	3.3	44	72	14	123	26	24	19	29	1.99
45693697--45693867	43	4.0	44	74	13	149	32	26	17	23	1.97
45697097--45697265	43	3.9	43	81	10	186	25	17	25	31	1.97
45697099--45697265	86	2.0	85	83	10	216	25	17	25	31	1.97
45700039--45700336	48	6.2	48	96	0	533	35	8	26	28	1.86
45700270--45700407	71	1.9	71	94	0	240	34	8	24	31	1.86
45700595--45700734	37	3.8	37	94	0	244	24	19	31	25	1.98
45707968--45708117	67	2.2	67	81	8	171	33	16	28	21	1.95
45707992--45708175	67	2.8	64	78	8	203	30	16	29	22	1.96
45724366--45724557	41	4.7	40	76	7	172	22	26	15	35	1.94
45730042--45730098	2	28.5	2	92	0	96	50	45	0	3	1.18
45733650--45733694	21	2.1	21	91	0	72	26	31	28	13	1.94
45736222--45736257	17	2.1	17	100	0	72	33	16	22	27	1.95
45737331--45737476	41	3.6	40	83	4	150	22	26	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45739283--45739443	42	3.8	42	76	6	137	30	15	21	32	1.94
45740826--45740850	13	1.9	13	100	0	50	32	32	20	16	1.94
45744462--45744573	27	4.2	25	85	10	116	35	23	23	17	1.95
45744462--45744573	54	2.1	54	86	3	154	35	23	23	17	1.95
45751437--45751545	27	4.0	26	87	8	130	34	22	25	17	1.95
45751437--45751545	54	2.0	54	85	7	150	34	22	25	17	1.95
45753756--45753834	29	2.7	29	86	5	106	27	32	15	24	1.95
45759808--45760031	40	5.7	40	85	8	275	25	22	27	25	2.00
45759808--45760031	79	2.8	81	84	9	291	25	22	27	25	2.00
45759808--45760064	79	3.3	79	82	10	226	26	21	27	24	1.99
45765261--45765331	29	2.4	29	86	4	90	25	30	16	26	1.97
45767602--45767786	79	2.3	81	83	7	227	25	27	22	24	2.00
45767602--45767786	40	4.7	40	81	10	209	25	27	22	24	2.00
45783255--45783431	27	6.5	27	83	3	203	27	15	27	29	1.96
45783256--45783411	82	1.9	81	88	3	233	26	15	28	29	1.96
45783252--45783431	82	2.2	81	83	3	227	27	15	27	30	1.96
45788368--45788400	13	2.5	13	95	0	57	21	12	24	42	1.86
45790626--45790687	30	2.1	30	93	0	106	19	8	19	53	1.69
45792834--45792884	19	2.6	20	84	9	61	31	0	7	60	1.25
45792841--45792885	20	2.2	20	80	7	56	33	0	4	62	1.15
45800631--45800709	25	3.3	25	66	16	76	34	5	29	31	1.79
45800631--45800946	47	6.7	47	86	0	452	32	8	31	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45800633--45800946	94	3.3	94	94	0	511	32	8	31	27	1.86
45802301--45802427	68	1.9	68	85	6	177	24	29	14	31	1.95
45802892--45802952	30	2.0	30	87	0	86	31	24	6	37	1.81
45810562--45810614	25	2.2	24	82	3	61	9	15	3	71	1.26
45813672--45813740	31	2.2	31	84	0	84	50	8	2	37	1.48
45816555--45816585	15	2.0	16	93	6	55	25	3	0	70	1.02
45818755--45818797	17	2.6	17	81	3	52	32	4	20	41	1.73
45830159--45830353	40	4.9	40	94	1	331	25	20	29	24	1.99
45830159--45830353	79	2.5	80	94	1	331	25	20	29	24	1.99
45838312--45838444	40	3.3	40	92	2	214	24	19	28	27	1.98
45838261--45838444	80	2.3	82	85	5	243	24	20	28	26	1.99
45838312--45838477	80	2.1	79	84	5	210	25	18	27	27	1.98
45841759--45841795	18	2.0	19	85	15	51	16	21	37	24	1.93
45844132--45844203	27	2.6	27	86	4	90	26	31	15	26	1.95
45859524--45859583	30	2.0	30	87	6	86	40	6	25	28	1.80
45862374--45862737	50	7.5	50	79	9	312	23	28	18	29	1.98
45862374--45862692	145	2.2	145	85	5	430	23	28	19	28	1.98
45862374--45862740	145	2.5	145	81	6	424	23	28	19	29	1.98
45872013--45872104	42	2.2	42	84	0	121	21	30	27	20	1.98
45877294--45877388	27	3.5	27	82	4	102	33	10	24	31	1.89
45877462--45877558	27	3.6	27	77	5	97	48	7	19	24	1.74
45877524--45877575	27	1.9	27	88	0	77	42	7	25	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45878524--45878596	31	2.4	31	81	4	76	32	17	8	41	1.79
45884962--45885139	27	6.6	27	83	5	180	28	28	15	26	1.96
45884983--45885138	82	1.9	81	85	6	217	28	28	16	26	1.97
45898297--45898401	37	2.8	37	80	0	111	45	17	4	32	1.69
45900871--45900993	36	3.5	36	70	8	108	23	20	25	30	1.98
45901850--45901912	30	2.2	28	78	10	72	23	22	33	20	1.97
45905464--45905516	18	2.9	18	86	5	72	43	13	20	22	1.86
45914071--45914104	13	2.6	13	95	0	59	35	29	17	17	1.93
45914062--45914112	26	2.0	26	84	7	68	31	33	19	15	1.93
45916655--45916791	46	3.0	46	84	0	175	25	30	9	34	1.88
45916765--45916985	47	4.7	47	93	0	343	25	30	12	31	1.93
45916881--45916955	23	3.2	23	62	23	57	28	32	10	29	1.90
45919116--45919507	40	9.8	40	86	3	538	25	28	22	24	1.99
45920995--45921131	46	3.0	46	85	0	184	26	30	8	34	1.87
45921105--45921325	47	4.7	47	93	0	343	25	30	12	31	1.92
45921221--45921295	23	3.2	23	66	23	66	29	32	9	29	1.88
45929810--45929847	20	1.9	20	88	0	58	18	13	31	36	1.89
45931406--45931448	21	2.0	21	100	0	86	13	27	23	34	1.93
45933240--45933284	20	2.2	20	88	0	63	33	15	0	51	1.44
45934396--45934421	11	2.4	11	100	0	52	53	19	0	26	1.45
45934844--45934920	27	2.9	27	86	0	100	27	19	18	35	1.95
45934885--45935147	27	9.7	27	83	2	260	30	11	19	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45934890--45935138	54	4.6	54	85	3	313	30	11	19	38	1.87
45934885--45935126	81	3.0	79	84	4	288	30	11	19	38	1.88
45935463--45935526	28	2.3	28	88	0	92	25	37	17	20	1.93
45945616--45945672	28	2.0	28	100	0	114	10	17	17	54	1.70
45947095--45947143	24	2.1	23	84	3	62	14	4	8	73	1.21
45950222--45950267	20	2.2	22	84	7	60	32	6	0	60	1.22
45965371--45965462	42	2.2	43	84	5	116	30	22	17	29	1.97
45972437--45972500	13	4.9	13	82	0	83	29	7	26	35	1.85
45972437--45972500	26	2.5	26	86	0	101	29	7	26	35	1.85
45976291--45976334	23	1.9	23	85	0	61	43	20	18	18	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373