Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  14  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4123355--4123392
19
2.0
19
100
0
76
15
10
42
31
1.81
4125430--4125552
46
2.7
46
94
0
210
33
27
20
18
1.96
4125853--4125916
31
2.0
32
96
3
121
29
6
25
39
1.80
4127396--4127448
26
2.0
26
85
7
72
37
22
15
24
1.92
4133907--4133971
32
2.0
32
96
0
121
32
6
24
36
1.80
4135445--4135497
26
2.0
26
85
7
72
37
22
15
24
1.92
4140361--4140406
17
2.9
16
76
23
53
43
13
8
34
1.74
4144177--4144206
15
2.0
15
100
0
60
0
46
13
40
1.43
4146753--4146795
14
3.2
13
90
9
68
46
0
6
46
1.30
4146777--4146816
17
2.2
19
91
8
66
37
2
5
55
1.35
4147336--4147372
16
2.3
17
86
13
60
40
0
0
59
0.97
4147380--4147425
20
2.2
22
88
7
69
54
0
0
45
0.99
4148408--4148442
16
2.1
16
89
5
52
28
2
0
68
1.04
4148458--4148490
6
5.3
6
96
3
57
48
0
0
51
1.00
4151215--4151263
24
2.0
26
84
8
66
44
0
4
51
1.20
4153586--4153636
22
2.3
22
89
0
75
68
17
5
7
1.34
4161789--4161874
30
2.8
30
82
7
93
54
2
3
39
1.30
4164748--4164846
50
2.0
49
90
2
153
34
8
20
37
1.82
4167662--4167723
29
2.1
29
100
0
124
30
0
9
59
1.29
4171471--4171515
21
2.3
19
80
7
54
60
0
4
35
1.17
4174694--4174863
53
3.2
52
83
6
200
25
25
12
35
1.92
4174692--4174863
54
3.2
52
83
7
211
26
26
12
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4176936--4176971
18
2.0
18
100
0
72
38
5
16
38
1.72
4180860--4180900
21
2.0
21
90
0
64
29
21
29
19
1.98
4187271--4187334
29
2.2
30
85
2
85
39
9
14
37
1.78
4189781--4189815
17
2.1
17
94
0
61
34
2
5
57
1.37
4190464--4190530
31
2.1
32
81
8
75
41
8
14
34
1.78
4194002--4194043
13
3.2
13
80
6
57
47
9
7
35
1.64
4197853--4198129
75
3.8
75
78
8
284
38
12
23
24
1.90
4201144--4201177
2
17.0
2
100
0
68
0
50
0
50
1.00
4202205--4202252
13
3.5
13
72
10
51
50
8
6
35
1.58
4202203--4202258
28
2.0
28
100
0
112
46
7
10
35
1.66
4208593--4208629
20
1.9
19
89
10
58
48
2
0
48
1.15
4211057--4211099
6
7.0
6
89
5
68
51
30
0
18
1.47
4211942--4211990
14
3.4
14
77
8
53
44
0
10
44
1.37
4211954--4211991
20
1.9
20
88
0
58
44
0
10
44
1.38
4216038--4216097
22
2.6
24
77
17
65
68
5
0
26
1.10
4220328--4220377
25
2.0
26
88
4
75
18
10
10
62
1.54
4222859--4222966
41
2.6
41
97
0
198
42
12
14
29
1.83
4227104--4227159
27
2.1
27
93
0
94
12
30
32
25
1.92
4227710--4227765
27
2.1
27
89
0
85
21
30
32
16
1.95
4227803--4227843
21
2.0
21
95
0
73
17
14
4
63
1.47
4229182--4229359
46
3.8
46
78
4
196
22
21
27
28
1.99
4229181--4229352
93
1.8
93
91
0
281
22
22
27
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4232293--4232361
15
4.6
15
83
0
84
11
17
13
57
1.64
4232284--4232380
30
3.2
30
81
10
99
10
17
14
57
1.64
4234758--4234935
46
3.8
46
79
4
205
22
21
28
27
1.99
4234757--4234928
93
1.8
93
92
0
290
22
22
28
26
1.99
4238041--4238175
16
7.8
16
73
16
83
63
1
2
32
1.15
4238039--4238113
25
2.9
25
78
13
71
64
1
2
32
1.16
4238069--4238129
19
3.2
19
83
6
70
55
1
4
37
1.31
4238170--4238221
22
2.3
23
83
6
61
61
3
3
30
1.32
4238007--4238285
9
29.8
9
68
15
111
62
2
4
30
1.29
4240831--4240878
24
2.0
25
91
4
80
33
4
22
39
1.74
4240874--4240924
24
2.1
23
86
13
68
56
9
19
13
1.65
4241408--4241490
30
2.8
30
79
17
84
24
10
2
62
1.39
4241557--4241608
23
2.2
24
83
6
63
30
5
0
63
1.18
4241557--4241607
25
2.1
23
89
7
75
29
5
0
64
1.17
4241773--4242034
125
2.1
127
86
3
359
33
12
16
36
1.87
4241808--4242076
125
2.2
125
80
5
294
30
13
18
37
1.90
4243363--4243643
106
2.7
105
84
3
350
30
14
22
32
1.94
4243794--4243967
9
19.2
9
70
18
112
34
1
1
63
1.10
4243825--4243959
17
7.2
17
68
28
55
33
0
0
65
1.04
4243818--4243902
26
3.2
27
78
11
95
34
0
1
64
1.01
4248926--4249037
56
2.0
56
87
0
161
44
15
25
14
1.84
4250229--4250287
30
2.0
28
81
12
66
59
11
22
6
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4254946--4255010
12
5.2
12
81
3
58
46
32
6
15
1.70
4254960--4255072
4
28.0
4
76
8
77
46
28
4
21
1.70
4254946--4255036
42
2.2
42
85
0
119
43
32
5
17
1.72
4257140--4257206
32
2.1
32
97
0
125
16
35
20
26
1.94
4262406--4262437
6
5.3
6
92
0
55
0
46
3
50
1.17
4266953--4266989
13
2.8
13
91
4
56
72
16
5
5
1.21
4267770--4267828
30
2.0
30
86
0
82
61
6
0
32
1.22
4267921--4267954
17
2.0
17
94
0
59
50
0
0
50
1.00
4276412--4276500
45
2.0
44
86
2
124
29
17
6
46
1.74
4277588--4277647
29
2.1
29
100
0
120
53
3
13
30
1.56
4278009--4278049
21
1.9
22
85
14
59
56
4
7
31
1.48
4278627--4278679
21
2.5
22
78
3
63
54
9
5
30
1.55
4282946--4282977
5
6.4
5
96
0
55
37
0
0
62
0.95
4282988--4283087
22
4.5
23
76
17
79
43
0
2
55
1.11
4282999--4283084
21
4.0
21
81
12
86
41
0
2
55
1.12
4282999--4283101
22
4.7
22
78
15
88
44
0
1
53
1.11
4283031--4283101
21
3.3
21
82
9
81
45
0
0
54
0.99
4283152--4283191
21
1.9
21
85
10
55
35
0
2
62
1.09
4283182--4283206
13
1.9
13
100
0
50
44
0
0
56
0.99
4283268--4283319
23
2.2
24
83
10
63
71
0
3
25
1.03
4283300--4283327
14
2.0
14
100
0
56
57
0
7
35
1.26
4283364--4283398
13
2.7
13
81
0
52
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4283606--4283729
62
2.0
62
88
0
185
40
13
13
32
1.84
4284146--4284191
10
4.5
10
75
24
51
63
0
0
36
0.95
4284246--4284293
21
2.3
21
92
3
80
60
0
0
39
0.97
4284267--4284363
33
2.9
33
83
9
124
62
0
1
36
1.02
4284325--4284393
22
3.0
23
83
12
88
55
2
0
42
1.15
4290761--4290809
20
2.5
20
89
0
80
48
0
28
22
1.50
4303439--4303478
3
13.3
3
100
0
80
67
0
0
32
0.91
4304267--4304414
74
2.0
74
90
0
233
29
6
35
27
1.83
4304492--4304595
35
3.0
35
84
5
138
16
16
27
39
1.90
4311377--4311462
43
2.0
43
84
4
111
26
18
29
25
1.98
4311584--4311662
31
2.5
32
81
2
88
63
16
5
15
1.48
4311885--4311950
21
3.1
21
79
12
64
1
46
19
31
1.59
4311927--4311956
15
1.9
16
93
6
53
0
50
16
33
1.46
4313945--4314084
17
8.7
17
68
27
69
33
3
0
62
1.18
4313945--4314077
34
4.2
31
69
22
80
33
3
0
62
1.18
4314162--4314217
17
3.2
18
78
14
64
35
1
0
62
1.06
4314160--4314223
31
2.1
31
83
13
80
39
1
0
59
1.07
4325984--4326361
205
1.8
205
94
1
677
31
18
21
28
1.96
4328191--4328250
31
1.9
31
83
6
77
31
3
1
63
1.20
4328348--4328403
17
3.2
18
78
14
64
35
1
0
62
1.06
4328346--4328409
31
2.1
31
83
13
80
39
1
0
59
1.07
4334494--4334714
9
25.7
9
76
10
194
34
0
20
44
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4334606--4334650
22
2.0
22
100
0
90
31
0
26
42
1.56
4335007--4335127
61
2.0
62
95
1
217
52
4
0
42
1.23
4335059--4335162
39
2.7
39
98
0
199
54
5
0
39
1.24
4335056--4335158
14
7.8
14
72
19
62
53
5
0
40
1.25
4335075--4335162
11
6.8
12
71
21
63
55
4
0
39
1.20
4335068--4335142
9
7.8
9
71
19
53
57
2
0
40
1.13
4334981--4335162
15
13.0
14
69
17
94
51
4
0
43
1.21
4338916--4338947
3
10.7
3
93
0
55
28
0
0
71
0.86
4339302--4339356
21
2.6
21
79
0
65
25
0
21
52
1.47
4340162--4340199
19
1.9
19
89
5
58
44
5
7
42
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373