genome.fa.s8.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  127  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41807423--41807510	31	2.8	31	86	6	108	6	15	2	75	1.12
41809377--41809614	50	4.8	48	77	6	206	26	17	24	31	1.97
41813154--41813256	45	2.2	45	81	8	118	24	20	19	35	1.95
41813154--41813268	23	4.9	23	73	13	92	24	20	18	37	1.94
41816223--41816284	27	2.3	27	82	0	70	27	16	17	38	1.91
41816267--41816469	80	2.5	81	83	5	259	30	10	19	39	1.86
41816267--41816447	27	6.7	27	82	5	215	32	11	18	38	1.86
41820308--41820397	29	3.1	29	87	1	128	28	30	14	26	1.95
41824293--41824382	29	3.1	29	87	1	128	27	28	13	30	1.94
41824595--41824637	16	2.7	16	96	0	77	13	16	16	53	1.73
41827675--41827782	37	2.9	37	95	0	189	25	31	19	23	1.98
41827990--41828230	47	5.1	47	90	0	347	27	29	10	32	1.90
41828130--41828201	22	3.1	22	66	24	58	25	29	12	33	1.92
41828105--41828183	25	3.3	25	68	22	78	30	27	8	32	1.87
41839248--41839444	49	4.0	50	77	12	167	24	18	28	28	1.98
41844634--41844717	43	2.0	43	95	0	150	21	17	27	33	1.96
41870604--41870629	12	2.2	12	100	0	52	50	7	0	42	1.31
41876598--41876961	47	7.8	46	71	15	228	29	20	28	22	1.98
41876598--41876957	94	3.9	90	77	13	338	29	20	28	22	1.98
41876735--41876955	91	2.4	95	80	9	249	28	20	28	21	1.98
41877872--41877984	43	2.7	42	80	4	120	26	16	24	31	1.96
41879143--41879208	30	2.2	30	97	0	123	24	22	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41883599--41883892	150	2.0	142	87	9	421	37	6	16	39	1.75
41888083--41888306	47	4.8	47	72	9	156	29	19	26	24	1.98
41895548--41895616	35	2.0	35	91	0	111	23	20	23	33	1.97
41899795--41899862	34	2.0	34	83	11	86	30	20	23	25	1.98
41902726--41902946	47	4.8	45	77	11	171	29	19	28	22	1.98
41903809--41903889	41	2.0	42	85	4	112	23	24	38	13	1.91
41905913--41906318	47	8.6	47	93	1	659	29	29	8	32	1.87
41905913--41906318	143	2.9	142	91	4	658	29	29	8	32	1.87
41914300--41914515	46	4.6	46	74	12	147	29	18	28	23	1.98
41914426--41914564	47	3.0	47	80	9	140	32	18	27	21	1.97
41922086--41922449	50	7.6	47	77	9	283	25	30	17	27	1.97
41922086--41922412	98	3.4	97	79	7	290	24	30	17	27	1.97
41922086--41922451	144	2.5	143	81	10	363	24	30	17	27	1.97
41925314--41925339	13	2.0	13	100	0	52	23	30	23	23	1.99
41941501--41941721	40	5.6	40	81	2	232	25	23	26	24	2.00
41943548--41943732	79	2.3	81	84	7	236	25	27	22	24	2.00
41943548--41943732	40	4.7	40	83	7	234	25	27	22	24	2.00
41951539--41951682	40	3.6	40	79	11	145	24	27	23	24	2.00
41970031--41970060	7	4.3	7	100	0	60	0	43	13	43	1.43
41971119--41971195	29	2.7	29	100	0	154	31	11	9	48	1.71
41971330--41971369	18	2.2	18	86	8	55	55	0	0	45	0.99
41978116--41978153	12	3.2	12	100	0	76	50	10	7	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41978227--41978552	161	2.0	161	100	0	652	37	8	18	35	1.81
41981557--41981618	15	3.9	15	72	15	52	61	1	3	33	1.22
41981565--41981630	33	2.0	34	84	3	89	65	1	3	30	1.17
41996274--41996443	93	1.8	93	89	0	268	21	19	29	29	1.98
41996278--41996449	46	3.7	46	75	16	174	22	19	28	29	1.98
42003799--42003969	93	1.8	93	91	0	279	22	19	28	28	1.98
42003800--42003974	46	3.8	46	77	10	203	23	20	27	29	1.99
42015410--42015448	19	2.2	19	86	9	55	61	2	7	28	1.37
42021707--42022014	40	7.7	40	95	0	517	23	26	19	29	1.98
42027817--42027908	26	3.5	27	79	7	100	34	22	21	20	1.96
42027899--42028079	20	9.1	20	84	2	238	34	28	24	12	1.92
42030421--42030490	23	3.0	23	76	2	77	30	12	17	40	1.87
42036162--42036214	28	1.9	28	88	3	81	71	1	5	20	1.16
42039191--42039259	26	2.7	26	83	0	93	23	27	24	24	2.00
42049528--42049711	40	4.6	40	84	2	244	25	26	23	25	2.00
42049492--42049711	80	2.8	79	84	4	257	25	25	23	25	2.00
42055512--42055544	17	1.9	17	93	0	57	12	3	3	81	0.91
42055499--42055558	32	1.9	31	86	10	86	15	5	1	78	1.00
42062946--42063100	42	3.7	41	80	3	175	30	23	14	31	1.94
42064890--42065300	25	16.6	25	71	11	188	26	17	24	31	1.97
42065044--42065199	49	3.2	50	77	5	156	23	17	25	33	1.96
42065114--42065300	74	2.5	74	88	0	275	26	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065174--42065317	50	2.9	50	80	11	161	26	19	26	27	1.99
42073376--42073577	43	4.7	43	86	6	284	24	17	29	28	1.97
42075200--42075519	47	6.8	46	71	10	168	21	28	20	28	1.98
42075859--42075915	30	1.9	30	92	0	96	31	26	8	33	1.87
42082169--42082321	43	3.6	41	78	8	130	26	20	26	26	1.99
42082169--42082336	85	2.0	85	82	4	205	26	19	25	28	1.99
42096227--42096311	32	2.7	32	92	0	134	28	27	18	25	1.98
42108266--42108309	22	2.0	22	91	8	72	31	4	29	34	1.78
42114339--42114368	14	2.1	14	93	0	51	70	0	0	30	0.88
42120892--42120933	18	2.3	18	100	0	84	19	33	33	14	1.91
42121639--42121681	10	4.3	10	84	0	50	18	4	9	67	1.36
42123188--42123253	6	11.3	6	91	1	91	16	0	4	78	0.90
42130986--42131179	40	4.9	40	92	0	318	26	22	28	23	1.99
42133846--42134164	94	3.4	97	75	9	304	23	29	20	27	1.99
42135019--42135043	7	3.6	7	100	0	50	12	12	0	76	1.04
42135166--42135207	21	2.0	21	85	0	57	30	23	2	42	1.67
42141783--42141839	30	1.9	30	88	0	87	45	7	19	28	1.76
42149190--42149377	49	3.8	49	82	2	241	26	17	26	30	1.97
42149189--42149372	100	1.8	100	94	0	323	25	17	27	30	1.97
42157575--42157853	46	5.9	49	72	15	192	24	29	18	28	1.98
42157578--42157848	99	2.9	94	78	10	257	24	28	18	28	1.98
42157583--42157845	138	1.9	143	81	9	326	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42161791--42161840	3	16.7	3	95	0	91	70	0	30	0	0.88
42165006--42165257	47	5.4	47	92	0	389	36	9	28	26	1.87
42165100--42165225	25	5.3	24	66	21	86	34	9	26	28	1.88
42165125--42165200	22	3.3	22	67	16	64	34	10	28	26	1.90
42166610--42166792	79	2.3	81	85	7	241	25	27	22	24	2.00
42166589--42166792	40	5.1	40	83	8	247	25	27	22	24	1.99
42174280--42174483	40	5.1	40	80	8	175	26	27	21	24	1.99
42174301--42174483	79	2.3	80	84	7	230	26	27	21	24	1.99
42176184--42176320	46	3.0	46	87	0	202	34	7	32	26	1.84
42180322--42180499	27	6.6	27	84	3	205	29	28	15	26	1.96
42180343--42180498	82	1.9	81	88	3	233	29	28	15	26	1.96
42183087--42183145	22	2.7	21	80	12	73	32	3	20	44	1.68
42189301--42189477	27	6.5	27	83	3	194	30	27	14	27	1.95
42189321--42189476	82	1.9	81	86	3	224	30	28	14	26	1.95
42192063--42192121	22	2.7	21	80	12	73	32	3	20	44	1.68
42205010--42205057	17	2.7	18	83	9	62	37	0	0	62	0.95
42205293--42205329	16	2.3	16	100	0	74	67	10	0	21	1.21
42214954--42215072	43	2.8	42	78	5	114	29	15	25	29	1.96
42215980--42216004	11	2.3	11	100	0	50	28	0	0	72	0.86
42217888--42218145	55	4.9	54	79	7	262	35	18	25	20	1.95
42217896--42218096	108	1.8	110	89	4	318	34	18	25	21	1.96
42218335--42218365	16	1.9	16	93	0	53	41	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42232284--42232596	40	7.8	40	91	0	500	23	27	19	29	1.98
42239377--42239689	40	7.8	40	92	0	509	23	27	20	29	1.98
42249487--42249745	120	2.2	120	82	7	296	26	21	26	25	1.99
42249487--42249712	40	5.7	40	90	4	298	25	21	26	26	2.00
42256065--42256289	40	5.7	40	85	7	257	25	26	21	26	1.99
42256065--42256289	79	2.8	78	80	12	251	25	26	21	26	1.99
42256065--42256289	119	1.9	120	81	9	282	25	26	21	26	1.99
42273534--42273647	27	4.2	27	84	5	142	35	21	23	19	1.95
42273534--42273648	55	2.1	55	85	9	157	36	20	23	19	1.95
42278783--42278861	29	2.7	29	86	5	106	27	32	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373