Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  323  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108501689--108501719
16
1.9
16
93
0
53
16
9
0
74
1.07
108508108--108508140
9
3.8
9
88
4
50
90
0
9
0
0.44
108508108--108508141
14
2.5
13
90
9
59
91
0
8
0
0.43
108509918--108509944
12
2.2
12
100
0
54
59
25
0
14
1.36
108511660--108511707
2
24.0
2
95
0
87
52
0
47
0
1.00
108514847--108514959
58
1.9
58
85
3
156
24
11
18
45
1.83
108514849--108514974
58
2.2
58
82
2
146
24
11
15
47
1.79
108516089--108516140
24
2.2
24
82
6
61
44
5
1
48
1.38
108516126--108516230
31
3.4
30
77
7
113
54
2
2
40
1.30
108516097--108516248
61
2.5
61
90
0
232
50
3
1
44
1.32
108516126--108516230
16
6.9
15
66
26
51
54
2
2
40
1.30
108518491--108518541
19
2.7
19
78
6
50
25
1
11
60
1.41
108523221--108523266
24
1.9
24
90
0
74
45
0
0
54
0.99
108523837--108523870
14
2.4
14
90
9
52
61
0
2
35
1.11
108524226--108524268
22
2.0
21
86
13
61
60
2
0
37
1.10
108529536--108529568
15
2.2
15
94
0
57
63
0
6
30
1.18
108530738--108530823
43
2.0
43
86
0
118
54
0
24
20
1.45
108530796--108530862
7
9.9
7
71
12
50
49
0
23
26
1.51
108530808--108530870
29
2.3
27
86
5
81
49
0
23
26
1.51
108532523--108532556
16
2.1
16
88
0
50
52
0
0
47
1.00
108532529--108532567
19
2.1
19
85
9
53
46
0
0
53
1.00
108532812--108532842
3
10.3
3
100
0
62
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108537430--108537495
10
6.4
10
81
13
80
33
27
0
39
1.57
108537431--108537495
32
2.0
32
91
5
105
33
26
0
40
1.56
108537430--108537485
22
2.6
22
81
15
73
33
28
0
37
1.58
108537644--108537742
49
2.0
49
90
5
157
34
6
2
57
1.35
108539790--108539978
56
3.4
56
96
0
342
37
3
6
52
1.43
108544458--108544728
46
5.9
46
92
0
418
39
14
23
22
1.91
108546789--108547177
126
3.1
125
83
1
465
29
17
16
35
1.92
108547937--108547974
20
1.9
20
84
10
51
42
13
23
21
1.88
108549874--108550055
46
4.0
46
92
1
285
39
14
24
22
1.91
108550729--108550771
12
3.6
12
78
12
52
41
0
0
58
0.98
108550756--108550822
26
2.6
26
100
0
134
41
17
0
40
1.50
108551298--108551351
27
2.0
27
92
0
90
38
12
24
24
1.90
108561936--108561983
21
2.2
23
85
7
64
27
2
8
62
1.35
108565451--108565572
38
3.4
37
76
9
110
45
1
0
51
1.16
108571037--108571242
113
1.8
113
92
2
351
22
16
17
42
1.88
108581070--108581127
18
3.4
18
69
26
63
37
6
1
53
1.38
108581066--108581130
32
2.0
32
100
0
130
41
6
3
49
1.43
108585884--108585908
9
2.8
9
100
0
50
36
36
12
16
1.85
108589481--108589636
37
4.0
37
78
18
174
26
21
15
36
1.93
108589553--108589821
46
5.6
46
84
10
340
28
22
14
34
1.93
108589596--108589815
52
4.3
52
85
8
299
27
22
14
35
1.93
108589553--108589821
98
2.7
98
93
0
457
28
22
14
34
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108592947--108593092
49
3.0
49
90
1
229
32
29
13
23
1.93
108594344--108594499
37
4.0
37
78
18
174
26
21
15
36
1.93
108594416--108594684
46
5.6
46
84
10
340
28
22
14
34
1.93
108594459--108594678
52
4.3
52
85
8
299
27
22
14
35
1.93
108594416--108594684
98
2.7
98
93
0
457
28
22
14
34
1.93
108597101--108597150
21
2.4
20
81
15
57
18
8
2
72
1.19
108597185--108597272
3
29.0
3
84
6
106
31
7
0
60
1.26
108597488--108597534
14
3.7
14
73
26
59
70
0
0
29
0.88
108597488--108597533
23
2.0
23
100
0
92
69
0
0
30
0.89
108600964--108601167
51
4.0
51
92
0
345
32
12
22
32
1.91
108600965--108601170
102
2.0
102
98
0
394
33
12
21
32
1.91
108604661--108604772
51
2.2
51
96
0
206
39
13
21
25
1.90
108605612--108605824
46
4.6
46
90
2
306
41
12
23
22
1.88
108605659--108605730
21
3.2
21
65
14
54
41
9
23
25
1.84
108608470--108608513
17
2.6
16
86
10
61
2
20
0
77
0.88
108614981--108615024
23
1.9
23
100
0
88
40
2
0
56
1.11
108616947--108616982
10
3.6
10
88
0
54
13
50
0
36
1.43
108619693--108619800
44
2.4
44
87
3
144
29
23
13
33
1.93
108626054--108626161
44
2.4
44
87
3
144
29
21
13
35
1.92
108628068--108628133
33
2.0
33
94
5
116
43
13
6
36
1.69
108628884--108628918
3
11.7
3
100
0
70
65
0
0
34
0.93
108631788--108631817
15
2.0
15
100
0
60
33
6
13
46
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108632388--108632417
7
4.3
7
100
0
60
86
0
0
13
0.57
108649615--108649659
5
8.8
5
80
4
54
53
2
2
42
1.25
108653576--108653639
31
2.1
31
100
0
128
31
18
7
42
1.79
108657263--108657307
5
8.8
5
80
4
54
53
2
2
42
1.25
108662942--108663037
46
2.1
46
98
0
183
59
11
7
21
1.56
108664088--108664205
58
2.0
58
100
0
236
30
15
27
27
1.96
108666282--108666324
21
2.0
21
86
0
59
16
25
18
39
1.91
108666929--108667035
41
2.7
39
84
5
128
26
14
22
36
1.93
108671566--108671916
38
9.1
38
91
1
522
22
23
25
29
1.99
108671584--108671921
116
2.9
114
91
2
541
22
23
25
28
1.99
108671566--108671916
154
2.3
154
92
1
567
22
23
25
29
1.99
108671913--108672044
45
3.0
45
82
7
148
24
21
28
25
1.99
108678981--108679113
66
2.0
66
97
0
248
17
16
37
28
1.91
108681401--108681524
30
4.1
30
93
1
203
25
24
6
43
1.78
108681411--108681518
15
7.2
15
67
12
78
25
22
7
44
1.79
108686102--108686213
30
3.7
30
95
0
197
25
21
7
46
1.76
108686102--108686209
15
7.2
15
65
12
69
25
21
7
45
1.78
108687633--108687672
18
2.2
18
86
8
55
15
20
27
37
1.92
108690454--108690531
28
2.8
28
84
9
97
39
1
1
57
1.15
108691027--108691067
14
2.8
15
82
10
50
58
0
4
36
1.20
108695119--108695331
106
2.0
106
88
1
320
38
11
18
31
1.87
108698514--108698552
20
2.0
20
100
0
78
30
2
30
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108699170--108699239
26
2.7
26
86
2
97
37
22
22
17
1.94
108713995--108714115
55
2.2
54
84
8
156
42
1
33
22
1.63
108730999--108731048
16
3.0
17
72
16
50
66
0
2
32
1.03
108731753--108731782
15
2.0
15
93
0
51
50
0
10
40
1.36
108731807--108731838
10
3.3
10
95
4
57
31
6
0
62
1.20
108738201--108738280
5
16.4
5
78
13
55
22
1
1
75
0.95
108740920--108741103
96
1.9
95
90
4
289
26
15
27
30
1.96
108741703--108741732
15
2.0
15
93
0
51
50
0
10
40
1.36
108741699--108741761
27
2.3
26
76
10
63
39
0
11
49
1.38
108744210--108744269
24
2.6
22
78
14
68
41
0
1
56
1.09
108754451--108754616
53
3.1
53
87
6
212
27
16
27
29
1.97
108755874--108755921
23
2.1
23
92
0
78
35
14
14
35
1.87
108763403--108763437
16
2.1
16
89
10
52
51
0
0
48
1.00
108768822--108768852
9
3.4
9
95
0
53
45
16
35
3
1.63
108770861--108770918
26
2.2
26
87
0
80
50
13
8
27
1.71
108786732--108786773
22
1.9
22
85
0
57
69
14
2
14
1.30
108787964--108788043
39
2.1
39
90
4
126
48
20
2
28
1.62
108787967--108788062
39
2.5
39
86
3
122
44
22
2
30
1.64
108794310--108794392
17
4.8
17
80
4
94
43
22
8
25
1.81
108794309--108794392
9
9.6
9
81
10
93
44
22
8
25
1.80
108794408--108794468
17
3.4
17
70
12
59
50
14
3
31
1.59
108794399--108794473
37
2.0
37
100
0
150
45
16
5
33
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108794399--108794490
37
2.5
37
91
7
134
46
15
5
32
1.68
108796890--108796948
21
2.8
21
85
15
70
55
3
0
40
1.16
108796899--108796948
21
2.5
20
90
9
77
56
4
0
40
1.18
108796996--108797029
11
3.0
11
83
8
50
64
2
0
32
1.08
108797550--108797594
6
7.5
6
97
0
81
15
0
64
20
1.29
108813226--108813267
21
2.0
22
90
4
68
42
19
2
35
1.64
108813213--108813312
51
2.0
51
100
0
200
44
22
4
30
1.71
108820998--108821042
23
1.9
23
81
4
54
31
2
4
62
1.27
108829717--108829760
11
4.0
11
78
0
52
13
6
9
70
1.33
108829716--108829758
22
2.0
22
90
0
68
16
4
9
69
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373