Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  308  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104230787--104230835
3
16.3
3
83
8
64
61
2
0
36
1.08
104231250--104231299
5
10.0
5
78
8
57
54
2
0
44
1.11
104231250--104231301
16
3.4
16
82
12
65
53
1
0
44
1.11
104232097--104232147
27
1.9
26
84
11
68
27
3
17
50
1.63
104236253--104236296
15
2.9
15
89
0
70
40
20
31
6
1.79
104236253--104236296
5
8.8
5
94
0
61
40
20
31
6
1.79
104238717--104238743
4
6.8
4
100
0
54
51
22
0
25
1.48
104241004--104241056
21
2.5
21
84
0
70
41
5
22
30
1.77
104244612--104244647
18
2.0
18
88
0
54
19
25
19
36
1.95
104247480--104247528
20
2.5
20
83
6
64
28
16
14
40
1.87
104257275--104257334
30
2.0
30
86
0
84
25
6
13
55
1.62
104257455--104257506
11
4.6
11
95
4
95
65
0
0
34
0.93
104258353--104258402
19
2.7
19
84
3
66
66
2
0
32
1.03
104259665--104259712
14
3.4
14
78
13
53
79
2
10
8
1.02
104259669--104259706
20
1.9
20
84
10
51
76
2
13
7
1.11
104261990--104262023
3
11.3
3
87
0
50
29
29
2
38
1.72
104264611--104264832
17
11.9
17
70
19
99
62
2
1
34
1.16
104264609--104264832
9
24.0
9
69
18
97
62
2
1
34
1.16
104264609--104264677
31
2.4
28
83
11
77
60
2
2
33
1.26
104264701--104264768
34
2.0
34
91
0
109
64
1
0
33
1.02
104264703--104264859
19
8.5
18
68
19
67
64
2
1
31
1.14
104264736--104264859
19
6.6
19
71
16
71
64
3
1
30
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104265985--104266032
23
2.4
18
71
28
51
47
16
14
20
1.82
104265990--104266036
23
2.0
23
100
0
94
44
17
17
21
1.86
104272428--104272466
20
2.0
21
85
10
55
53
0
20
25
1.45
104277042--104277083
18
2.4
17
81
18
50
35
2
2
59
1.23
104278370--104278408
18
2.3
18
91
8
64
71
2
5
20
1.17
104284788--104284895
26
4.2
26
92
0
180
29
6
26
37
1.82
104290014--104290087
19
3.9
18
78
15
78
21
27
24
27
1.99
104290474--104290503
6
5.0
6
100
0
60
83
0
0
16
0.65
104294105--104294142
17
2.2
17
86
9
51
26
0
10
63
1.27
104296208--104296282
24
3.1
24
98
0
141
42
21
16
20
1.89
104297269--104297426
27
5.9
26
78
10
158
32
22
25
20
1.98
104297269--104297429
54
3.0
55
82
7
206
32
21
25
20
1.98
104299025--104299132
26
4.2
26
92
0
180
37
24
6
32
1.81
104301187--104301533
129
2.7
127
75
7
317
30
23
16
28
1.96
104301187--104301536
43
8.2
43
77
6
280
30
24
16
28
1.97
104301877--104301926
21
2.4
21
89
0
73
0
44
18
38
1.50
104302362--104302390
13
2.1
14
93
6
51
55
10
0
34
1.34
104318301--104318368
9
7.3
9
80
11
75
36
0
17
45
1.49
104322525--104322603
40
2.0
40
87
0
113
31
20
15
32
1.93
104322934--104322979
22
2.2
20
84
7
56
50
30
0
19
1.48
104323257--104323311
21
2.6
21
82
0
74
54
27
0
18
1.44
104323221--104323289
28
2.4
28
76
11
68
49
27
1
21
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104323286--104323344
28
2.1
28
81
6
66
57
23
0
18
1.40
104323916--104324028
41
2.8
41
75
12
133
23
22
20
34
1.97
104323829--104324028
82
2.5
82
82
2
224
28
21
18
32
1.96
104326602--104326778
90
2.0
91
81
6
209
42
13
9
33
1.77
104330046--104330078
15
2.2
15
89
10
50
63
9
9
18
1.49
104331582--104331687
52
2.0
52
100
0
212
34
10
20
33
1.87
104332088--104332122
18
1.9
18
88
0
52
28
5
20
45
1.73
104332413--104332453
19
2.1
20
90
4
66
26
26
0
46
1.53
104333474--104333559
43
2.0
41
82
4
100
38
5
3
52
1.43
104333803--104333873
36
1.9
37
85
2
99
22
7
5
64
1.39
104334332--104334380
21
2.4
20
79
3
53
51
2
2
44
1.24
104334440--104334535
44
2.2
44
90
5
151
53
6
6
34
1.51
104337754--104337796
19
2.3
19
83
0
50
4
4
9
81
0.97
104340480--104340591
54
2.1
55
93
1
190
47
17
7
27
1.74
104343650--104343755
53
2.0
53
96
0
194
32
9
18
39
1.83
104345409--104345521
37
2.9
39
76
9
113
32
22
18
26
1.97
104345633--104345665
15
2.2
15
100
0
66
45
21
0
33
1.52
104345925--104345988
20
3.2
19
70
24
51
3
14
7
75
1.15
104358836--104358873
19
2.0
19
89
0
58
44
18
15
21
1.86
104363023--104363173
53
2.8
53
88
4
205
25
16
28
29
1.97
104365394--104365432
14
2.8
14
100
0
78
20
7
12
58
1.58
104375842--104376161
46
6.8
49
74
13
237
23
29
19
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104375842--104376018
99
1.8
99
84
8
249
24
30
18
27
1.98
104375846--104376161
94
3.3
90
80
9
264
23
29
19
27
1.98
104375845--104376158
140
2.2
142
80
11
342
23
29
19
28
1.98
104377994--104378091
42
2.7
33
71
24
88
33
18
7
40
1.78
104378000--104378083
42
2.0
42
100
0
168
28
21
7
42
1.79
104384428--104384475
23
2.1
23
88
0
69
35
0
4
60
1.16
104386686--104386716
13
2.5
12
94
5
53
6
0
3
90
0.55
104391426--104391467
23
2.0
21
86
13
59
47
9
0
42
1.36
104391499--104391523
12
2.1
12
100
0
50
48
0
12
40
1.40
104396219--104396275
17
3.5
17
76
11
57
63
0
1
35
1.05
104396553--104396665
47
2.4
45
75
18
115
57
0
6
36
1.24
104403546--104403646
27
3.7
27
75
1
94
37
12
23
25
1.91
104403547--104403668
27
4.6
25
72
14
84
36
12
22
28
1.91
104403548--104403666
54
2.2
54
82
7
143
36
12
23
27
1.91
104416831--104416869
14
2.8
13
81
11
51
74
0
2
23
0.94
104416831--104416890
12
4.8
13
76
17
65
73
0
1
25
0.93
104416846--104416890
23
2.0
23
90
0
72
73
0
0
26
0.84
104421675--104421916
43
5.7
42
73
6
123
33
26
13
26
1.94
104421762--104421839
40
2.0
40
84
0
102
37
24
12
25
1.91
104421699--104421925
126
1.8
126
83
3
305
31
27
13
27
1.94
104424745--104424775
16
1.9
16
93
0
53
25
0
3
70
1.02
104425880--104425939
28
2.1
28
81
6
68
53
25
0
21
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104425945--104426011
22
3.1
22
73
4
55
50
25
1
22
1.57
104425978--104426009
14
2.3
14
94
0
55
50
21
0
28
1.49
104426118--104426232
40
2.9
40
80
0
149
30
23
13
33
1.92
104432581--104432653
18
4.1
18
76
3
67
34
15
19
31
1.92
104432621--104432659
18
2.2
18
85
0
51
28
15
25
30
1.96
104435128--104435179
3
17.3
3
100
0
104
67
0
0
32
0.91
104437582--104437619
20
1.9
20
84
10
51
50
5
5
39
1.48
104438083--104438214
31
4.3
31
79
8
144
39
1
4
54
1.30
104438084--104438198
61
1.9
61
94
0
203
40
1
3
53
1.28
104438160--104438229
15
4.6
16
75
21
69
38
2
5
52
1.40
104447411--104447577
35
4.6
35
81
10
167
32
24
10
31
1.90
104447407--104447555
75
2.0
74
85
3
201
32
22
12
32
1.91
104454915--104455081
35
4.6
36
82
8
196
34
23
9
31
1.87
104454910--104455081
75
2.4
73
83
8
217
34
23
9
31
1.88
104458005--104458034
11
2.7
11
89
0
51
66
6
6
20
1.38
104458790--104458941
40
3.8
40
80
1
144
23
24
17
34
1.96
104458871--104458949
40
2.0
40
82
5
97
25
25
17
31
1.97
104469672--104469722
19
2.5
20
76
17
61
39
3
15
41
1.66
104469887--104469929
17
2.4
18
80
7
61
53
0
4
41
1.21
104470028--104470067
6
6.3
6
83
11
53
77
0
22
0
0.77
104476762--104476812
19
2.5
20
73
17
52
39
1
15
43
1.58
104480282--104480361
27
3.0
26
73
21
67
31
2
5
61
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104481502--104481561
29
2.1
29
83
0
75
68
5
6
20
1.32
104481815--104481884
28
2.4
29
81
11
99
35
2
2
58
1.28
104484182--104484297
57
2.0
57
96
0
214
35
12
24
28
1.91
104485486--104485675
93
2.0
93
100
0
380
33
8
30
27
1.86
104486118--104486156
20
2.0
20
89
0
60
48
2
12
35
1.55
104491431--104491470
3
13.7
3
84
5
55
70
2
2
25
1.13
104491658--104491684
3
9.0
3
100
0
54
0
0
66
33
0.92
104498828--104498876
25
2.0
24
84
8
62
26
24
16
32
1.96
104499251--104499335
23
3.5
23
73
14
89
40
2
27
30
1.69
104499240--104499342
51
2.0
51
98
0
197
40
3
26
29
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373