Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  366  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121018634--121018707
38
1.9
38
91
0
121
21
20
14
43
1.88
121018995--121019060
26
2.3
29
82
10
75
62
6
3
28
1.34
121026826--121026863
15
2.6
15
95
4
69
0
28
5
65
1.14
121028528--121028568
21
2.0
21
90
0
64
41
19
2
36
1.65
121032333--121032393
11
5.2
11
72
20
52
42
1
0
55
1.09
121032423--121032471
24
2.0
24
84
7
64
57
0
0
42
0.99
121032432--121032482
23
2.2
23
89
6
77
49
0
1
49
1.12
121037038--121037091
27
2.0
28
82
10
67
25
11
1
61
1.40
121039502--121039549
6
7.8
6
77
13
53
47
0
2
50
1.12
121039502--121039559
12
5.0
12
74
19
52
48
0
1
50
1.11
121039502--121039549
18
2.6
19
83
3
62
47
0
2
50
1.12
121039502--121039551
12
4.0
13
86
2
59
48
0
2
50
1.12
121046404--121046439
13
2.8
14
84
16
51
27
25
0
47
1.52
121046391--121046431
18
2.2
19
87
12
59
29
24
0
46
1.53
121046618--121046688
21
3.3
21
92
4
106
35
28
23
12
1.92
121046593--121046698
42
2.5
43
79
3
124
37
25
20
16
1.93
121046593--121046700
21
5.0
22
80
5
105
37
25
21
15
1.93
121046863--121046905
19
2.3
19
84
15
54
44
18
0
37
1.50
121047072--121047129
15
3.8
15
88
2
89
51
12
0
36
1.39
121047075--121047133
30
2.0
28
93
6
100
55
11
0
32
1.36
121058462--121058500
6
6.7
6
85
5
53
30
0
12
56
1.37
121058452--121058496
17
2.6
17
86
10
65
31
0
13
55
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121059369--121059490
58
2.1
58
83
7
151
29
16
13
40
1.86
121075624--121075648
2
12.5
2
100
0
50
52
0
0
48
1.00
121075961--121076020
31
2.0
30
86
3
84
36
3
13
46
1.60
121080496--121080550
16
3.4
16
76
11
58
32
3
3
60
1.32
121081492--121081524
11
2.9
11
95
4
57
21
0
18
60
1.36
121088305--121088395
47
1.9
47
88
4
139
40
16
14
28
1.87
121090050--121090091
20
2.1
20
86
8
59
73
4
7
14
1.21
121094294--121094356
33
1.9
33
96
0
117
33
14
12
39
1.84
121099734--121099769
19
2.0
19
89
10
58
25
8
0
66
1.19
121101670--121101730
13
4.7
13
87
0
95
42
26
0
31
1.55
121114285--121114358
29
2.5
29
80
6
78
43
0
4
52
1.20
121114273--121114358
30
2.9
28
76
10
82
44
0
3
52
1.18
121115159--121115216
26
2.2
24
80
14
62
56
5
3
34
1.38
121115210--121115255
19
2.3
20
82
14
60
56
0
0
43
0.99
121115326--121115363
17
2.3
16
83
16
51
47
0
2
50
1.15
121116914--121116979
26
2.6
25
81
11
71
39
1
6
53
1.35
121119097--121119144
23
2.0
24
92
4
80
31
4
14
50
1.62
121124820--121124853
16
2.1
16
88
5
50
52
0
0
47
1.00
121134365--121134676
154
2.0
154
99
0
615
47
16
15
21
1.83
121138292--121138351
19
3.2
17
79
13
57
71
5
1
21
1.14
121139327--121139397
31
2.3
31
90
7
110
40
1
4
53
1.29
121147072--121147610
269
2.0
269
96
0
988
40
12
10
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121151210--121151353
39
3.7
39
84
5
166
22
20
28
28
1.99
121151210--121151373
78
2.1
78
79
5
181
21
20
28
28
1.98
121159400--121159436
19
2.0
18
89
5
56
62
18
10
8
1.52
121160178--121160219
22
2.0
20
86
9
57
57
4
19
19
1.58
121160434--121160487
21
2.6
21
87
0
72
31
31
5
31
1.81
121171957--121172009
27
2.0
27
100
0
106
45
24
0
30
1.54
121171726--121172197
259
1.8
259
93
2
824
37
20
12
29
1.89
121177255--121177304
16
3.2
16
88
2
75
60
0
2
38
1.09
121177369--121177431
23
2.8
22
81
9
65
47
4
1
46
1.33
121177394--121177424
15
2.1
15
93
0
53
54
6
0
38
1.26
121177493--121177563
29
2.4
29
82
13
76
36
2
1
59
1.21
121177476--121177551
36
2.2
36
86
9
104
36
2
0
60
1.11
121177526--121177581
23
2.6
21
76
15
60
46
0
1
51
1.11
121177570--121177622
10
5.6
10
80
13
58
35
1
0
62
1.06
121184829--121184853
5
5.0
5
100
0
50
60
0
0
40
0.97
121185873--121185926
25
2.1
26
86
10
76
40
0
1
57
1.09
121187083--121187189
45
2.4
45
85
3
144
51
5
6
36
1.51
121188956--121189194
120
2.0
120
99
0
469
35
7
8
48
1.62
121189576--121189623
23
2.1
23
84
0
60
27
2
20
50
1.60
121194788--121194945
82
1.9
81
85
3
219
43
5
8
43
1.56
121198462--121198502
21
1.9
22
85
5
57
19
17
17
46
1.85
121199213--121199240
3
9.3
3
100
0
56
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121208368--121208434
34
2.1
33
86
8
93
46
17
11
23
1.82
121208378--121208445
34
2.0
34
85
0
91
44
19
11
25
1.84
121211787--121211848
31
2.0
32
90
3
99
35
11
11
41
1.77
121214595--121214624
15
2.1
15
93
6
53
0
10
0
90
0.47
121214764--121214803
20
2.0
20
85
5
53
70
2
5
22
1.19
121216040--121216088
18
2.6
18
84
15
55
63
0
4
32
1.13
121216040--121216074
6
5.8
6
90
10
54
65
0
2
31
1.07
121216336--121216396
9
6.6
9
73
19
54
62
1
1
34
1.15
121217931--121218259
175
1.9
177
84
5
450
26
12
15
45
1.82
121223826--121223869
22
2.0
22
86
0
61
31
2
22
43
1.66
121225627--121225658
6
5.3
6
92
0
55
81
0
18
0
0.70
121228088--121228129
13
3.2
13
77
12
50
2
11
9
76
1.12
121238890--121238934
25
1.9
22
86
13
63
53
6
6
33
1.53
121244168--121244224
6
9.5
6
88
0
78
15
31
0
52
1.43
121244192--121244232
18
2.3
18
86
0
55
21
36
0
41
1.54
121245306--121245549
131
1.9
131
90
1
391
41
20
8
30
1.81
121246869--121246903
6
5.8
6
93
0
61
0
20
0
80
0.72
121254054--121254082
6
5.0
6
95
4
51
68
0
13
17
1.20
121258940--121259032
44
2.1
43
80
9
100
36
8
3
51
1.49
121260350--121260385
15
2.3
16
85
9
56
44
0
0
55
0.99
121260350--121260389
13
2.9
13
82
13
53
47
0
0
52
1.00
121260840--121260903
19
3.2
19
72
10
65
59
3
10
26
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121260828--121260909
41
2.0
41
100
0
164
56
2
12
29
1.49
121260828--121260891
22
3.0
21
71
10
60
54
3
14
28
1.55
121263132--121263275
71
2.0
71
86
0
198
40
5
29
25
1.78
121280653--121280703
3
17.3
3
91
4
86
66
1
0
31
1.03
121280656--121280702
23
2.0
23
95
0
85
65
2
0
31
1.04
121283068--121283121
11
5.0
11
84
8
67
61
0
0
38
0.96
121283075--121283135
21
3.0
20
85
4
68
65
0
0
34
0.93
121283073--121283121
10
4.7
10
78
16
55
63
0
0
36
0.95
121286006--121286235
126
1.8
126
85
5
322
39
15
15
30
1.88
121286402--121286461
18
3.5
18
71
13
63
65
10
8
16
1.47
121286388--121286463
33
2.3
33
97
0
143
63
11
7
17
1.51
121286810--121286872
21
2.9
23
73
17
64
61
0
4
33
1.17
121288036--121288115
30
2.6
32
71
9
78
63
1
5
30
1.23
121288183--121288212
14
2.1
14
93
0
51
63
0
10
26
1.26
121289788--121289876
43
2.1
43
95
0
160
37
14
10
38
1.80
121290942--121290996
27
2.0
29
82
7
69
50
9
3
36
1.51
121294871--121294901
9
3.4
9
100
0
62
38
0
0
61
0.96
121300746--121301072
163
2.0
164
92
1
541
27
10
20
41
1.85
121307588--121307699
47
2.4
46
86
5
152
42
10
8
37
1.71
121318691--121318774
6
14.0
6
70
0
60
34
4
30
29
1.78
121318715--121318773
30
2.0
30
93
0
100
35
5
32
27
1.79
121318691--121318753
24
2.6
24
89
0
99
33
4
33
28
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121320256--121320304
12
4.2
12
76
10
57
30
2
6
61
1.32
121320246--121320295
22
2.3
22
100
0
100
28
4
8
60
1.43
121320233--121320270
17
2.2
18
95
4
69
23
5
10
60
1.50
121324900--121324944
22
2.0
22
100
0
90
33
22
22
22
1.97
121325682--121325825
73
2.0
74
90
1
227
35
11
5
47
1.62
121333183--121333228
23
2.0
23
100
0
92
43
26
17
13
1.85
121334918--121334950
16
2.1
16
94
0
57
42
24
9
24
1.83
121339943--121339998
26
2.2
26
80
6
60
60
7
5
26
1.44
121340419--121340465
24
1.9
25
82
4
60
57
0
0
42
0.98
121342998--121343098
39
2.6
39
88
0
148
36
24
25
12
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373