Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  309  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104500802--104500854
26
2.0
26
92
0
88
22
15
33
28
1.94
104507770--104507825
24
2.4
24
84
3
69
17
28
23
30
1.97
104509717--104509835
23
5.2
23
77
3
80
46
26
15
11
1.80
104509731--104509835
23
4.6
23
76
5
97
45
28
15
10
1.79
104526024--104526221
98
2.0
98
99
0
387
22
37
13
25
1.91
104528781--104528846
26
2.5
27
85
9
93
69
1
27
1
1.06
104530066--104530134
27
2.4
28
79
15
79
39
36
5
18
1.75
104531187--104531217
12
2.6
12
94
0
53
0
25
0
74
0.82
104531297--104531327
16
1.9
16
93
0
53
54
3
0
41
1.16
104536602--104536724
28
4.4
28
88
2
167
33
27
12
26
1.92
104544084--104544206
28
4.4
28
86
2
158
34
26
12
26
1.92
104547202--104547271
27
2.6
27
79
0
77
22
21
24
31
1.98
104550850--104551037
41
4.6
41
97
0
349
28
21
22
27
1.99
104551258--104551319
33
2.0
32
84
9
83
27
9
24
38
1.86
104551262--104551336
33
2.3
33
76
2
80
32
8
22
37
1.83
104553945--104554062
50
2.3
52
92
2
195
40
13
12
33
1.82
104555756--104555819
29
2.1
31
83
11
80
34
0
4
60
1.17
104555797--104555821
8
3.1
8
100
0
50
24
0
0
76
0.80
104555831--104555862
2
16.0
2
93
0
55
0
3
46
50
1.17
104558476--104558651
46
3.8
46
77
14
191
20
20
28
30
1.98
104558473--104558644
93
1.8
93
92
2
292
20
20
29
29
1.98
104560391--104560421
8
3.9
8
95
0
53
54
25
19
0
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104561020--104561064
20
2.3
19
81
7
54
24
15
31
28
1.96
104561027--104561064
20
1.9
20
88
0
58
26
15
28
28
1.96
104565754--104565786
13
2.4
14
85
10
50
57
15
6
21
1.59
104566335--104566374
18
2.2
19
86
4
55
35
10
20
35
1.86
104576913--104577077
86
1.9
85
81
6
199
33
27
16
21
1.95
104576918--104577076
43
3.7
43
78
10
164
32
27
17
22
1.96
104579170--104579207
19
2.0
20
85
15
53
39
23
0
36
1.55
104579437--104579607
93
1.8
93
89
0
270
29
29
19
21
1.98
104579432--104579601
46
3.7
46
76
10
166
30
28
18
22
1.98
104579482--104579623
46
3.1
45
72
18
123
29
28
19
23
1.98
104581869--104581920
25
2.1
25
100
0
104
28
23
11
36
1.90
104589622--104589712
46
2.0
46
82
4
112
23
15
16
45
1.85
104589735--104589764
15
1.9
16
93
6
53
56
6
3
33
1.42
104590251--104590280
14
2.2
13
94
5
51
33
6
20
40
1.78
104590264--104590309
19
2.3
20
96
3
85
23
10
17
47
1.79
104590377--104590449
35
2.1
36
97
2
139
38
2
1
57
1.22
104603581--104603643
31
2.0
31
87
0
90
55
4
23
15
1.59
104604757--104604886
58
2.2
59
82
12
160
41
0
2
55
1.18
104607305--104607367
31
2.0
31
100
0
126
49
15
25
9
1.75
104609620--104609688
29
2.4
29
95
0
120
31
23
21
23
1.98
104618434--104618517
40
2.1
41
97
2
161
27
13
7
52
1.66
104620454--104620579
63
2.0
63
100
0
252
31
9
14
44
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104623433--104623470
14
2.7
15
84
8
53
44
0
0
55
0.99
104623507--104623545
21
1.9
20
89
5
60
53
5
0
41
1.23
104627758--104627814
26
2.2
26
90
0
87
36
22
12
28
1.90
104630756--104630793
7
5.4
7
81
12
51
28
0
0
71
0.87
104630754--104630810
21
2.7
21
86
0
69
28
3
1
66
1.18
104630788--104630833
15
2.8
16
83
12
58
28
4
2
65
1.23
104631310--104631342
5
6.6
5
100
0
66
81
0
0
18
0.68
104632849--104632886
20
1.9
20
94
0
67
71
2
5
21
1.19
104635757--104635810
24
2.3
23
83
3
63
42
11
0
46
1.39
104641121--104641235
30
3.8
30
86
2
144
27
47
4
20
1.68
104641758--104641808
23
2.2
24
85
3
68
39
1
5
52
1.37
104641781--104641897
27
4.3
29
68
12
77
33
6
2
57
1.39
104641796--104641850
25
2.3
23
87
6
74
34
3
0
61
1.13
104641872--104641957
25
3.6
25
80
7
83
31
6
5
55
1.50
104641874--104641964
23
3.9
24
75
11
73
32
6
5
54
1.49
104642086--104642133
16
3.1
15
90
6
69
31
2
2
64
1.16
104642086--104642137
8
6.5
8
82
8
61
30
1
1
65
1.14
104646489--104646530
16
2.7
15
82
17
50
42
0
2
54
1.13
104654087--104654120
17
2.0
17
100
0
68
52
5
5
35
1.50
104654884--104654932
20
2.6
18
78
15
62
46
0
0
53
1.00
104655700--104655731
6
5.2
6
96
3
55
0
62
0
37
0.95
104656982--104657018
17
2.1
18
90
5
58
29
10
35
24
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104659258--104659287
14
2.2
13
94
5
51
40
13
6
40
1.71
104662897--104662941
23
1.9
24
86
4
65
62
0
8
28
1.25
104671514--104671542
12
2.5
12
94
5
51
41
20
0
37
1.53
104675658--104675710
19
2.9
19
78
15
58
69
0
3
26
1.05
104675658--104675710
13
4.3
13
79
13
51
69
0
3
26
1.05
104675655--104675711
24
2.3
24
85
8
71
71
0
3
24
1.01
104679344--104679389
22
2.1
22
91
0
74
41
19
8
30
1.82
104680914--104681015
51
2.0
51
100
0
204
33
15
25
25
1.95
104705644--104705689
22
2.1
22
100
0
92
26
13
30
30
1.93
104708369--104708518
43
3.5
43
78
8
153
28
14
24
34
1.93
104709578--104709619
22
1.9
22
95
0
75
28
4
26
40
1.76
104711137--104711186
21
2.4
21
86
0
64
24
28
32
16
1.96
104713074--104713136
27
2.3
28
81
8
85
34
0
3
61
1.12
104721776--104721818
22
2.0
22
86
4
61
32
13
23
30
1.93
104725045--104725124
39
2.1
39
95
0
142
33
11
27
27
1.91
104745352--104745396
24
1.9
23
86
4
63
48
0
40
11
1.39
104747456--104747525
24
2.9
24
76
6
61
54
8
1
35
1.40
104752657--104752694
20
1.9
19
94
5
67
39
5
0
55
1.23
104762506--104762537
3
10.7
3
93
0
55
71
0
0
28
0.86
104762647--104762725
15
5.4
14
78
11
54
64
1
10
24
1.32
104763437--104763484
16
3.2
15
80
8
53
50
0
2
47
1.12
104765736--104765928
45
4.3
45
89
1
271
19
19
20
40
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104766098--104766288
18
10.6
18
78
8
165
35
12
15
37
1.84
104766086--104766288
72
2.8
72
82
5
214
36
11
14
36
1.83
104767488--104767545
17
3.2
16
79
16
53
51
0
24
24
1.48
104772954--104773023
35
2.0
35
100
0
140
31
2
17
48
1.61
104772965--104773021
18
3.2
18
65
5
53
29
3
19
47
1.66
104780059--104780187
27
4.8
28
80
10
151
20
25
19
34
1.96
104780056--104780199
54
2.7
54
89
4
202
19
24
20
35
1.96
104788463--104788531
34
2.0
34
94
0
120
26
20
8
44
1.80
104789601--104789675
32
2.3
32
86
4
107
26
41
5
26
1.77
104789759--104789849
42
2.2
42
85
0
128
37
27
1
34
1.64
104789776--104789864
42
2.3
39
86
9
128
31
31
0
37
1.58
104789853--104789878
3
8.7
3
100
0
52
0
30
0
69
0.89
104792297--104792362
16
4.2
16
72
20
50
28
1
1
68
1.08
104792311--104792370
29
2.0
30
87
3
86
33
1
1
63
1.14
104792315--104792382
30
2.3
28
80
9
73
30
4
1
63
1.23
104792392--104792437
12
3.6
12
83
16
65
26
0
2
71
0.97
104792394--104792445
14
3.8
13
83
16
70
25
0
1
73
0.94
104792395--104792445
19
2.4
23
69
27
58
25
0
1
72
0.95
104792403--104792475
19
4.1
19
71
16
66
28
1
4
65
1.19
104792399--104792466
7
9.7
7
72
15
52
27
1
2
67
1.13
104792399--104792477
33
2.3
33
84
4
95
29
1
3
65
1.17
104792491--104792531
13
2.9
15
75
10
50
41
4
0
53
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104792783--104792840
22
2.5
23
78
16
57
20
1
8
68
1.25
104792850--104792884
18
1.9
18
88
0
52
17
0
8
74
1.06
104792926--104793139
115
1.8
112
82
6
266
30
4
12
52
1.58
104801058--104801432
187
2.0
187
100
0
750
41
22
3
32
1.71
104806789--104806845
22
2.6
22
100
0
114
19
15
0
64
1.28
104806782--104806841
22
2.4
27
73
26
85
21
13
0
65
1.27
104807704--104807761
30
1.9
30
86
6
82
22
31
27
18
1.97
104808941--104809014
3
24.7
3
100
0
148
33
66
0
0
0.92
104811422--104811529
26
4.2
26
92
0
180
31
7
25
36
1.83
104812969--104813032
26
2.4
26
84
5
74
32
25
12
29
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373