genome.fa.s8.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  206  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69794691--69794834	64	2.2	64	92	0	234	27	29	14	29	1.95
69795367--69795423	29	2.0	29	86	6	80	29	24	7	38	1.82
69797186--69797273	42	2.0	43	80	8	99	34	27	17	21	1.95
69799544--69799579	17	2.1	17	89	0	54	69	0	13	16	1.19
69801705--69801834	47	2.8	47	85	0	161	22	14	29	33	1.94
69801702--69801853	47	3.2	48	72	15	129	23	14	26	34	1.94
69802792--69802833	21	2.0	21	86	9	59	35	21	7	35	1.81
69805530--69805601	37	1.9	37	94	5	128	31	23	11	33	1.90
69813962--69814204	49	4.9	50	77	4	224	26	19	25	28	1.99
69819703--69819805	42	2.4	43	79	6	120	30	18	17	33	1.94
69827062--69827158	38	2.6	38	88	0	131	22	25	25	25	2.00
69827074--69827169	38	2.5	38	84	0	111	23	21	26	28	1.99
69827162--69827273	43	2.6	43	97	0	206	9	25	33	31	1.88
69833151--69833219	30	2.3	30	82	7	88	57	18	15	7	1.61
69833151--69833219	15	4.7	15	82	8	79	57	18	15	7	1.61
69836220--69836446	49	4.6	48	86	4	283	29	27	18	25	1.98
69836210--69836446	97	2.4	100	83	4	295	29	27	18	24	1.98
69838577--69838639	15	4.2	14	80	11	63	57	17	15	9	1.65
69838575--69838634	30	2.0	30	87	6	86	56	18	16	8	1.64
69841583--69841816	48	4.8	49	85	5	296	29	27	17	26	1.97
69843712--69843751	20	2.0	20	85	9	55	40	15	7	37	1.75
69848308--69848409	42	2.4	43	77	6	109	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69848297--69848446	43	3.5	43	73	8	110	29	23	19	28	1.98
69852547--69852679	51	2.6	50	86	3	169	25	18	25	30	1.98
69852544--69852727	50	3.7	51	81	5	198	25	17	26	29	1.98
69861294--69861422	49	2.7	49	80	4	147	25	30	18	25	1.98
69865898--69865995	22	4.3	23	76	14	80	36	17	25	20	1.94
69865935--69865996	22	2.7	24	82	12	85	37	16	27	19	1.93
69865935--69866006	23	3.2	23	80	7	85	34	16	29	19	1.94
69872921--69873174	129	2.0	129	79	4	280	27	26	22	24	2.00
69874357--69874416	30	2.0	30	90	0	93	38	8	25	28	1.84
69876979--69877023	24	1.9	23	82	13	56	40	6	20	33	1.78
69888975--69889031	27	2.0	31	83	13	77	49	0	17	33	1.47
69890920--69891146	48	4.7	48	78	4	224	25	20	28	25	1.99
69890927--69891146	96	2.3	96	83	3	255	25	19	28	25	1.99
69897984--69898060	30	2.6	30	97	0	145	22	31	31	15	1.95
69898007--69898059	17	3.4	17	67	20	51	24	32	28	15	1.95
69903867--69903922	28	2.0	28	96	0	103	55	0	17	26	1.43
69905517--69905694	40	4.5	40	89	2	261	23	22	28	25	1.99
69931327--69931544	40	5.6	40	92	3	349	23	22	26	27	2.00
69938236--69938288	26	2.0	26	82	7	63	20	15	22	41	1.89
69939542--69939636	12	7.9	12	65	9	50	21	37	6	34	1.79
69939543--69939643	24	4.2	24	93	0	157	19	38	4	36	1.74
69940178--69940402	48	4.7	46	75	11	186	24	30	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69940129--69940413	96	3.0	96	85	2	349	25	28	18	27	1.98
69949968--69950034	18	3.7	18	81	0	89	38	14	10	35	1.81
69950180--69950286	45	2.4	45	84	1	144	41	18	18	21	1.91
69951995--69952032	19	2.0	19	85	10	51	5	18	0	76	0.97
69952132--69952194	31	2.0	32	84	9	85	47	4	0	47	1.23
69956909--69956992	18	4.6	18	83	1	105	41	13	8	36	1.74
69956909--69956992	36	2.3	37	87	2	125	41	13	8	36	1.74
69957187--69957291	45	2.3	45	86	0	156	40	19	20	20	1.92
69957192--69957307	45	2.8	40	82	11	112	38	20	19	20	1.93
69958679--69958735	26	2.2	26	80	3	60	26	17	19	36	1.94
69961930--69962192	39	6.8	38	90	4	375	24	22	24	29	1.99
69961930--69962192	78	3.4	78	92	0	418	24	22	24	29	1.99
69961930--69962192	117	2.2	117	92	1	429	24	22	24	29	1.99
69970228--69970307	15	5.4	15	77	7	83	10	18	13	57	1.64
69970219--69970306	30	3.0	30	80	11	92	10	18	15	55	1.68
69972687--69972859	46	3.7	46	79	10	199	19	20	31	28	1.97
69972680--69972852	93	1.9	93	92	0	292	19	20	31	28	1.97
69977633--69977888	39	6.6	39	90	1	372	22	22	27	28	1.99
69981271--69981419	74	2.0	74	98	0	289	27	10	1	60	1.38
69997334--69997410	13	5.9	13	85	0	91	35	25	7	31	1.85
69997334--69997408	39	1.9	39	88	0	114	34	25	8	32	1.85
70011064--70011117	27	2.0	27	92	0	90	37	14	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70016888--70016927	19	2.1	19	90	0	62	40	22	7	30	1.81
70016891--70016935	19	2.4	19	80	0	54	44	17	8	28	1.79
70027960--70028004	22	2.0	22	91	0	72	35	20	6	37	1.79
70029985--70030027	16	2.7	16	79	13	52	46	20	23	9	1.79
70030239--70030326	29	3.1	29	88	1	133	30	15	26	27	1.96
70031451--70031511	18	3.4	18	100	0	122	39	11	18	31	1.86
70033381--70033494	48	2.4	47	82	8	142	28	22	14	35	1.93
70049947--70050010	32	2.0	32	100	0	128	43	6	12	37	1.68
70052429--70052488	24	2.5	24	94	0	102	21	28	21	28	1.99
70054268--70054339	36	2.0	36	91	0	117	22	19	18	40	1.92
70064292--70064336	20	2.2	20	92	0	72	51	2	11	35	1.50
70070304--70070382	18	4.3	18	76	12	70	3	15	2	78	1.00
70070342--70070382	11	3.9	10	87	9	55	0	14	2	82	0.76
70073307--70073353	22	2.1	22	84	7	60	31	27	27	12	1.93
70074258--70074365	54	2.0	54	98	0	207	24	36	7	32	1.83
70078130--70078176	23	2.0	23	100	0	94	44	21	4	29	1.71
70080515--70080687	48	3.6	48	82	6	208	27	25	19	27	1.99
70096159--70096435	143	1.9	143	97	0	527	34	12	23	29	1.91
70096913--70096966	24	2.3	23	78	15	56	48	5	1	44	1.37
70097127--70097161	7	5.1	7	96	3	63	42	0	0	57	0.99
70097395--70097457	30	2.1	30	100	0	126	46	3	6	44	1.45
70106374--70106683	49	6.5	48	77	11	232	24	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70106374--70106724	92	3.7	94	80	8	335	24	27	20	27	1.99
70106605--70106724	46	2.6	45	85	9	163	21	28	21	28	1.99
70122042--70122213	93	1.8	93	93	0	299	29	29	20	20	1.98
70122035--70122210	46	3.8	46	76	12	198	30	29	19	20	1.97
70123686--70123730	23	2.0	23	86	8	65	53	6	4	35	1.47
70123821--70123871	18	2.7	20	88	8	72	58	0	0	41	0.98
70123773--70123847	3	26.3	3	74	17	63	64	2	0	33	1.08
70125483--70125632	67	2.2	67	81	8	171	32	17	28	21	1.96
70125507--70125678	67	2.7	64	76	7	186	29	17	29	23	1.97
70126151--70126206	28	2.0	28	100	0	112	35	7	21	35	1.81
70125858--70127234	352	3.9	352	99	0	2709	39	7	20	32	1.81
70126503--70126558	28	2.0	28	100	0	112	35	7	21	35	1.81
70126855--70126910	28	2.0	28	100	0	112	35	7	21	35	1.81
70131475--70131508	16	2.2	15	89	5	50	44	0	8	47	1.34
70131625--70131650	13	2.0	13	100	0	52	53	0	0	46	1.00
70141987--70142030	17	2.6	17	100	0	88	47	9	25	18	1.77
70148294--70148471	27	6.6	27	83	3	205	26	15	28	29	1.96
70148295--70148450	82	1.9	81	88	3	233	26	15	28	29	1.96
70148291--70148471	82	2.2	81	83	2	229	27	15	27	29	1.96
70152212--70152389	27	6.6	27	84	3	205	29	28	15	26	1.96
70152233--70152388	82	1.9	81	88	3	233	29	28	15	26	1.96
70152871--70152897	12	2.2	12	100	0	54	40	0	7	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70155424--70155601	27	6.6	27	83	3	205	26	15	28	29	1.96
70155425--70155580	82	1.9	81	88	3	233	26	15	28	29	1.96
70155421--70155601	82	2.2	81	83	2	229	27	15	27	29	1.96
70163565--70163742	27	6.6	27	83	3	205	26	15	28	29	1.96
70163566--70163721	82	1.9	81	88	3	233	26	15	28	29	1.96
70163562--70163742	82	2.2	81	83	2	229	27	15	27	29	1.96
70185104--70185369	27	10.0	27	72	8	172	32	12	23	31	1.91
70185104--70185325	53	4.2	53	78	5	207	33	12	24	30	1.92
70185104--70185369	79	3.4	78	80	4	230	32	12	23	31	1.91
70192551--70192619	27	2.6	27	90	0	102	26	14	28	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373