Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  169  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56543130--56543404
54
5.1
54
85
0
325
40
8
21
30
1.83
56543130--56543404
81
3.4
81
83
0
352
40
8
21
30
1.83
56543329--56543550
27
8.3
27
75
8
103
29
9
22
38
1.86
56543400--56543550
54
2.8
53
77
5
142
25
9
23
40
1.86
56545748--56545929
27
6.7
27
82
1
186
39
20
9
30
1.85
56545741--56545903
54
3.0
54
90
0
245
38
20
9
31
1.84
56545885--56545999
27
4.3
27
87
0
158
33
17
20
27
1.95
56550278--56550422
40
3.6
40
96
0
263
27
26
22
22
1.99
56558620--56558681
22
2.8
22
75
0
61
40
24
17
17
1.91
56559038--56559089
27
1.9
27
84
7
70
32
11
15
40
1.83
56559046--56559174
53
2.4
54
83
3
154
33
10
16
40
1.82
56559097--56559177
27
3.0
26
79
13
101
32
9
19
38
1.85
56560344--56560372
12
2.3
13
94
5
51
79
0
17
3
0.87
56567057--56567166
42
2.6
42
77
7
116
29
19
22
29
1.98
56575075--56575181
37
2.9
37
92
0
178
28
31
16
23
1.96
56576989--56577173
40
4.7
40
84
7
218
23
21
28
25
1.99
56576989--56577171
79
2.3
81
84
7
232
24
21
28
25
1.99
56577023--56577196
79
2.2
78
82
10
210
26
21
26
25
1.99
56588975--56589019
22
2.0
22
83
8
56
28
0
0
71
0.87
56590603--56590780
27
6.6
27
85
3
214
30
28
14
26
1.95
56590624--56590779
82
1.9
81
89
3
242
30
28
14
26
1.95
56591333--56591357
13
1.9
13
100
0
50
32
16
20
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56598848--56599025
27
6.6
27
83
3
178
29
28
15
26
1.96
56598869--56599024
82
1.9
81
86
3
224
29
28
15
26
1.96
56599448--56599516
34
2.0
34
100
0
138
43
11
8
36
1.72
56605184--56605215
12
2.7
12
95
0
55
0
28
0
71
0.86
56614416--56614501
43
2.0
44
93
2
147
47
11
12
27
1.76
56614483--56614532
25
2.0
25
84
7
66
48
4
26
22
1.68
56620850--56621113
138
1.9
138
93
0
456
40
7
7
44
1.60
56624030--56624458
47
9.1
47
94
1
723
31
9
30
28
1.88
56624577--56624655
37
2.1
37
88
4
115
25
18
30
25
1.98
56629828--56630005
27
6.6
27
83
3
196
26
15
28
29
1.96
56629829--56629984
82
1.9
81
86
3
224
26
16
28
28
1.97
56629825--56630005
82
2.2
81
82
2
220
27
16
27
29
1.97
56637787--56637964
27
6.6
27
83
3
196
26
15
28
29
1.96
56637788--56637943
82
1.9
81
86
3
224
26
16
28
28
1.97
56637784--56637964
82
2.2
81
82
2
220
27
16
27
29
1.97
56648056--56648306
125
2.0
125
100
0
502
41
15
21
22
1.90
56659492--56659602
33
3.4
33
89
0
177
17
8
34
40
1.79
56659492--56659624
33
4.0
33
86
1
133
18
9
33
39
1.82
56661735--56661912
27
6.6
27
82
3
160
28
28
16
26
1.97
56661756--56661911
82
1.9
81
84
3
206
27
28
16
26
1.97
56669688--56669865
27
6.6
27
84
3
196
29
28
15
26
1.96
56669709--56669864
82
1.9
81
86
3
224
28
28
16
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56672528--56672580
26
2.0
27
85
7
74
24
15
22
37
1.92
56674069--56674172
26
4.0
26
89
0
154
36
22
7
33
1.83
56674865--56674894
12
2.5
12
94
0
51
23
40
30
6
1.80
56676243--56676347
44
2.4
43
80
3
138
11
20
14
54
1.70
56677734--56677758
12
2.1
12
100
0
50
16
8
16
60
1.58
56678300--56678341
21
2.0
20
86
4
57
42
14
7
35
1.73
56678477--56678845
50
7.7
48
81
8
296
28
19
29
23
1.98
56678478--56678741
138
1.9
135
82
8
298
28
18
29
23
1.98
56686146--56686516
50
7.7
47
80
10
330
27
20
29
21
1.98
56688515--56688898
76
5.1
74
81
6
342
33
22
20
23
1.97
56688680--56688884
40
5.3
40
70
13
160
35
21
20
23
1.96
56688575--56688897
152
2.1
152
83
2
398
35
21
19
22
1.96
56692808--56693069
39
6.7
40
87
7
319
24
27
22
25
2.00
56701642--56701694
25
2.2
23
83
12
63
30
0
26
43
1.55
56705133--56705183
16
3.1
15
76
23
50
17
3
3
74
1.12
56705133--56705194
33
1.9
32
83
3
79
19
6
4
69
1.29
56706841--56706893
25
2.2
24
82
3
61
16
22
18
41
1.90
56714036--56714165
46
2.8
48
78
13
155
30
27
20
22
1.98
56714590--56714650
30
2.0
30
90
0
95
31
24
8
36
1.85
56719790--56719958
46
3.7
46
75
13
175
31
28
17
21
1.96
56720391--56720450
30
2.0
30
90
0
93
30
25
8
36
1.85
56723059--56723138
41
2.0
41
82
9
101
26
25
35
13
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56731247--56731419
46
3.7
46
81
10
217
22
19
27
30
1.98
56731244--56731415
93
1.8
93
93
0
299
22
19
27
29
1.98
56735382--56735425
18
2.3
20
84
7
56
34
6
2
56
1.38
56744541--56744601
30
2.0
30
83
0
77
40
4
22
31
1.75
56745100--56745262
67
2.4
68
80
11
174
31
15
29
23
1.96
56747143--56747177
18
2.0
17
94
5
61
42
0
0
57
0.99
56747386--56747444
31
1.9
31
86
13
86
61
5
0
33
1.18
56747687--56747724
20
1.9
20
88
0
58
36
0
5
57
1.21
56747967--56748006
14
2.9
14
84
0
53
35
7
15
42
1.75
56747975--56748041
34
1.9
35
84
3
91
32
10
11
44
1.75
56747990--56748029
20
2.0
20
85
0
53
30
12
10
47
1.74
56751260--56751310
6
8.5
6
97
0
84
37
0
62
0
0.95
56751595--56751628
12
2.9
12
91
4
52
58
0
0
41
0.98
56751614--56751662
22
2.2
23
79
17
59
65
2
4
28
1.22
56758445--56758548
42
2.5
42
79
3
120
31
11
24
32
1.91
56770684--56770856
93
1.9
93
91
2
285
29
28
19
21
1.98
56770685--56770850
46
3.6
45
76
14
176
30
28
19
22
1.98
56804156--56804208
21
2.5
21
78
0
61
30
24
22
22
1.99
56808608--56808667
27
2.3
26
85
2
75
35
20
23
21
1.96
56808707--56808757
27
1.9
26
84
4
66
35
17
27
19
1.94
56811884--56812028
40
3.6
40
85
4
184
24
26
24
25
2.00
56818455--56818692
49
4.8
49
84
4
289
28
26
18
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56818460--56818699
99
2.4
100
85
3
315
28
27
19
25
1.98
56822290--56822351
31
2.0
32
87
3
90
35
19
24
20
1.96
56822297--56822437
67
2.0
67
85
5
183
31
21
27
19
1.97
56827871--56827922
23
2.2
23
83
10
61
34
28
0
36
1.58
56849829--56849925
37
2.6
37
83
3
115
40
27
10
21
1.86
56849859--56849950
37
2.5
37
83
0
112
40
27
10
21
1.87
56866331--56866422
40
2.3
40
84
3
114
30
15
23
30
1.95
56868736--56868870
55
2.4
56
85
2
175
28
15
24
31
1.95
56874323--56874436
42
2.7
42
76
9
115
33
23
17
25
1.96
56885333--56885384
24
2.2
24
89
0
77
17
19
38
25
1.93
56885333--56885384
12
4.3
12
85
0
68
17
19
38
25
1.93
56897554--56897581
14
2.0
14
100
0
56
28
7
21
42
1.79
56897683--56897718
16
2.2
16
90
9
56
52
19
22
5
1.66
56897929--56898052
29
4.3
29
90
1
196
24
13
31
30
1.94
56904854--56904952
39
2.5
39
80
3
110
41
21
9
28
1.83
56906564--56906626
27
2.4
26
86
7
83
17
26
22
33
1.96
56906640--56906728
24
3.7
24
71
8
65
20
15
19
44
1.86
56914967--56915189
79
2.8
80
86
7
287
25
22
27
24
2.00
56914967--56915189
39
5.6
39
87
4
274
25
22
27
24
2.00
56914967--56915222
79
3.3
79
83
8
240
26
21
27
24
1.99
56918990--56919019
12
2.5
12
94
0
51
36
20
33
10
1.86
56926275--56926339
33
2.0
33
84
0
85
56
7
20
15
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56935837--56935899
30
2.1
30
96
0
117
23
3
15
57
1.53
56937407--56937444
19
2.0
20
85
15
53
39
23
0
36
1.55
56937668--56937840
46
3.7
46
77
10
190
29
27
20
21
1.98
56937673--56937843
93
1.8
93
91
0
279
28
28
21
21
1.98
56938263--56938323
30
2.0
30
87
3
86
32
24
4
37
1.77
56940888--56940940
14
3.8
13
79
18
54
43
0
1
54
1.11
56959534--56959709
56
3.1
56
98
0
334
44
9
23
22
1.82
56960838--56961062
40
5.7
40
85
5
287
24
21
28
25
1.99
56963212--56963256
21
2.2
20
84
4
54
42
2
15
40
1.59
56965040--56965217
79
2.2
79
81
3
205
26
21
26
24
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373