Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  351  of  373  ( 44737 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116852528--116853017
159
3.0
157
84
8
569
33
19
19
27
1.96
116852854--116853556
69
10.0
70
80
9
692
33
20
17
28
1.95
116852888--116853556
272
2.4
279
84
7
851
33
20
17
29
1.95
116861816--116861895
16
5.1
15
76
19
74
66
1
2
30
1.13
116861812--116861863
8
6.5
8
82
8
61
65
1
1
30
1.14
116861811--116861867
24
2.4
24
79
5
71
64
1
3
29
1.20
116862010--116862074
25
2.7
25
88
6
91
52
4
7
35
1.51
116862089--116862151
16
4.1
16
75
19
53
61
0
3
34
1.12
116862099--116862232
25
5.6
25
70
15
86
58
2
4
35
1.31
116862718--116862891
30
5.8
30
91
1
278
22
3
48
25
1.66
116862718--116862891
59
2.9
59
94
1
303
22
3
48
25
1.66
116868735--116868909
71
2.5
69
83
3
190
29
13
22
34
1.92
116868909--116869074
72
2.3
71
85
4
217
23
15
19
41
1.89
116869007--116870332
140
9.5
140
94
1
2270
25
16
19
38
1.92
116870171--116870204
13
2.5
13
90
4
50
20
11
8
58
1.59
116869007--116870332
559
2.4
559
96
0
2413
25
16
19
38
1.92
116870252--116870548
72
4.0
72
88
7
427
30
16
18
34
1.93
116870502--116870597
49
2.0
49
97
0
183
30
16
20
32
1.95
116870430--116870669
121
2.0
121
95
0
435
30
16
18
33
1.94
116870601--116870836
83
3.0
83
80
10
303
35
14
17
32
1.90
116870551--116870908
74
4.7
74
82
9
382
31
15
19
33
1.93
116870551--116870836
157
1.8
155
89
2
448
33
15
18
32
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116870813--116870989
92
1.9
90
83
6
223
25
18
19
35
1.95
116870902--116871496
88
7.2
78
71
15
342
27
16
18
37
1.92
116870902--116871126
78
2.9
78
85
2
263
30
18
17
33
1.94
116870728--116871496
254
3.1
242
82
7
869
27
16
19
36
1.93
116871269--116871328
30
2.0
30
90
6
95
23
10
25
41
1.85
116872729--116872771
13
3.0
15
80
13
54
37
0
6
55
1.27
116874404--116874663
45
5.8
45
77
8
269
25
28
15
30
1.96
116874404--116874570
89
1.9
89
89
0
262
25
29
14
29
1.95
116874603--116875209
78
7.8
78
91
2
950
24
24
19
31
1.98
116877555--116877598
20
2.2
20
95
0
79
31
22
4
40
1.74
116883486--116883518
17
1.9
17
88
11
50
69
0
0
30
0.88
116883486--116883519
18
1.9
17
88
5
50
70
0
0
29
0.87
116883776--116883833
22
2.6
22
81
7
64
41
17
5
36
1.72
116883812--116883866
18
2.9
19
89
5
94
38
14
10
36
1.81
116884731--116884770
18
2.2
18
100
0
80
27
12
10
50
1.72
116890082--116890174
44
2.1
45
88
11
138
37
26
4
31
1.76
116890156--116890210
16
3.4
16
84
0
74
30
29
5
34
1.80
116890831--116890865
17
2.1
17
89
10
54
34
0
22
42
1.54
116893518--116893594
27
2.7
27
82
6
73
57
3
7
31
1.45
116893640--116893679
20
2.0
20
85
0
53
60
2
15
22
1.47
116897910--116897954
22
2.0
22
86
4
63
37
17
6
37
1.76
116897926--116898023
35
2.7
37
87
12
150
35
16
10
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116897933--116898023
19
4.9
19
92
8
161
36
15
10
37
1.83
116898142--116898180
21
1.9
20
84
5
51
12
2
12
71
1.24
116898386--116898511
44
2.8
44
87
1
171
26
27
15
29
1.96
116898373--116898511
45
3.1
45
86
1
172
25
27
15
31
1.95
116898681--116898808
37
3.4
37
66
16
107
21
22
20
35
1.96
116898541--116898835
78
3.8
78
91
2
459
25
22
19
32
1.97
116899347--116899393
21
2.3
20
78
10
51
21
21
10
46
1.81
116909173--116909217
19
2.4
18
86
13
65
0
33
0
66
0.92
116909427--116909466
20
2.0
20
95
0
71
47
2
0
50
1.14
116913232--116913265
6
5.5
6
86
6
50
32
2
11
52
1.53
116913381--116913419
3
13.0
3
88
0
60
30
2
0
66
1.05
116913623--116913754
64
2.1
64
83
11
164
37
4
2
56
1.33
116913685--116913744
20
3.0
18
76
21
57
35
5
1
58
1.30
116914105--116914199
38
2.5
37
78
13
97
36
12
1
49
1.48
116917752--116917776
9
2.8
9
100
0
50
12
12
20
56
1.67
116918333--116918427
38
2.5
37
78
13
97
36
12
1
49
1.48
116920501--116920625
62
2.0
62
90
0
196
38
24
8
28
1.85
116921903--116921983
11
7.0
11
77
17
58
76
8
11
3
1.13
116921905--116921986
25
3.4
25
76
6
62
79
7
9
3
1.04
116922387--116922449
13
4.9
12
80
16
65
80
1
14
3
0.90
116922387--116922450
6
10.2
6
75
24
53
79
1
15
3
0.93
116923428--116923908
95
5.0
95
94
0
818
30
19
22
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116923568--116923809
45
5.2
44
65
20
132
29
20
21
28
1.98
116923881--116924206
46
7.2
46
64
12
165
26
19
23
30
1.98
116923808--116924281
134
3.5
134
92
1
734
27
20
22
29
1.98
116924290--116924670
44
8.6
45
79
4
400
28
16
25
29
1.97
116924290--116924670
132
2.9
132
95
0
672
28
16
25
29
1.97
116925745--116925779
11
3.2
11
88
11
54
0
57
0
42
0.99
116925735--116925779
23
2.0
22
86
4
63
0
62
0
37
0.96
116926259--116926304
23
2.0
23
83
8
58
30
2
10
56
1.46
116926536--116926572
19
1.9
19
88
0
56
40
2
5
51
1.39
116928732--116928775
19
2.3
20
84
7
56
27
20
11
40
1.86
116933102--116933794
132
5.3
132
94
0
1154
28
16
24
29
1.97
116934554--116934591
16
2.3
17
86
4
51
78
7
0
13
0.94
116935195--116935228
6
5.5
6
86
6
50
32
2
11
52
1.53
116935344--116935385
3
14.0
3
89
0
66
30
2
0
66
1.04
116935589--116935720
64
2.1
64
83
11
164
37
4
2
56
1.33
116935651--116935710
20
3.0
18
76
21
57
35
5
1
58
1.30
116936072--116936166
38
2.5
37
78
13
97
36
12
1
49
1.48
116939720--116939744
9
2.8
9
100
0
50
12
12
20
56
1.67
116940702--116940789
45
2.0
45
95
0
158
27
15
22
34
1.95
116941616--116941679
31
2.1
31
100
0
128
39
12
18
29
1.88
116942063--116942144
40
2.0
40
95
0
146
29
18
18
34
1.94
116942063--116942178
40
2.9
40
83
6
130
26
19
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116942202--116942349
40
3.7
40
87
2
192
25
25
18
30
1.98
116943143--116943192
22
2.3
22
86
10
68
26
0
30
44
1.55
116943440--116943482
22
2.0
22
90
0
68
16
0
44
39
1.48
116943440--116943482
7
5.9
7
81
8
50
16
0
44
39
1.48
116949355--116949389
18
1.9
18
88
0
52
71
17
0
11
1.14
116951365--116951432
20
3.2
23
60
20
56
26
16
30
26
1.96
116951358--116951441
41
2.0
41
100
0
168
29
16
26
27
1.97
116953788--116953834
24
2.0
24
82
0
58
40
29
6
23
1.79
116956755--116956814
22
2.6
23
84
10
70
65
6
1
26
1.27
116956877--116956931
27
2.0
28
85
3
76
63
7
1
27
1.31
116957015--116957227
26
8.2
26
72
10
127
59
4
5
30
1.38
116957137--116957207
27
2.6
28
86
10
96
61
0
4
33
1.15
116957160--116957206
13
3.5
13
72
16
51
65
0
2
31
1.04
116957564--116957617
26
2.2
24
83
6
63
66
7
3
22
1.33
116958305--116958340
19
1.9
18
88
5
54
16
11
5
66
1.40
116959564--116959604
18
2.3
18
91
4
66
70
17
0
12
1.16
116962120--116962184
34
2.0
34
84
6
89
30
26
16
26
1.97
116962493--116962545
26
2.0
26
82
7
63
26
15
20
37
1.92
116964026--116964135
26
4.2
26
92
2
159
36
23
4
35
1.76
116965100--116965205
26
4.1
26
84
7
144
34
8
20
35
1.83
116965107--116965205
52
1.9
52
91
0
162
34
9
21
35
1.85
116969377--116969436
21
2.7
23
80
19
74
36
3
1
58
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116969706--116969821
21
5.3
21
71
16
67
34
4
2
58
1.31
116970103--116970153
27
1.9
26
84
11
68
25
9
11
52
1.68
116985796--116985828
14
2.3
15
94
5
59
75
3
0
21
0.93
116986663--116986691
14
2.0
15
93
6
51
75
0
24
0
0.80
116991376--116991432
21
2.8
21
81
2
71
73
0
26
0
0.83
116991857--116992377
138
3.6
142
72
18
425
52
6
10
29
1.61
116991686--116992324
286
2.2
292
82
12
756
53
6
9
30
1.60
116994106--116994211
10
11.3
9
72
15
56
69
0
27
2
1.02
116994114--116994211
4
23.2
4
72
19
51
71
0
25
3
1.00
116994105--116994249
38
3.8
37
78
11
132
68
0
28
2
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373