genome.fa.s8.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  165  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55221771--55221943	93	1.9	93	92	0	292	21	20	28	28	1.98
55225789--55225828	13	3.0	13	80	20	55	32	2	12	52	1.52
55234890--55234952	33	1.9	33	84	12	85	0	47	0	52	1.00
55236572--55236603	3	10.7	3	100	0	64	31	68	0	0	0.90
55236802--55236837	6	6.2	6	87	6	56	13	2	0	83	0.76
55241331--55241359	15	1.9	15	100	0	58	41	31	0	27	1.56
55241826--55241874	17	3.1	17	66	22	52	26	28	22	22	1.99
55241810--55241878	30	2.3	30	92	0	120	28	31	20	18	1.96
55242760--55242878	47	2.5	47	87	0	166	33	26	17	22	1.96
55245842--55246025	48	3.8	49	73	11	139	33	28	16	21	1.95
55249214--55249394	79	2.3	80	83	8	226	25	28	20	24	1.99
55249193--55249396	40	5.1	40	80	8	229	25	27	21	25	1.99
55262884--55262949	33	2.0	33	100	0	132	33	12	21	33	1.90
55263339--55263545	27	7.6	27	91	3	315	26	14	28	30	1.95
55263339--55263545	55	3.8	55	96	0	360	26	14	28	30	1.95
55271101--55271181	34	2.4	33	81	2	90	29	25	22	22	1.99
55275969--55276119	42	3.6	41	83	3	176	29	24	14	31	1.95
55284864--55284978	29	4.0	29	86	2	144	26	15	29	27	1.96
55284877--55284987	57	1.9	57	88	1	168	27	16	29	27	1.97
55287746--55287838	26	3.6	25	84	5	114	24	27	10	36	1.89
55291074--55291152	37	2.1	37	90	0	122	25	31	18	24	1.98
55291271--55291669	47	8.4	47	90	2	591	28	29	9	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55299898--55300022	40	3.1	40	91	0	205	24	30	22	22	1.99
55309955--55309993	21	1.9	20	85	15	53	46	2	2	48	1.29
55310190--55310279	20	4.5	20	67	20	71	36	1	15	46	1.53
55310075--55310332	60	4.4	59	79	9	260	37	1	14	46	1.54
55310076--55310332	119	2.2	116	82	6	297	38	1	14	45	1.54
55310233--55310334	29	3.4	29	69	17	77	41	0	12	45	1.49
55313869--55313978	36	3.1	36	89	0	148	28	30	16	25	1.97
55318609--55318659	25	2.0	25	100	0	102	35	7	21	35	1.83
55320457--55320525	9	8.0	9	70	23	51	55	20	0	24	1.44
55320457--55320510	23	2.5	21	81	6	63	53	18	0	27	1.45
55320479--55320509	10	2.9	11	90	9	55	45	19	0	35	1.51
55320458--55320527	37	2.0	33	86	10	95	52	20	0	27	1.46
55323276--55323427	40	3.8	41	89	3	211	24	21	28	25	1.99
55323276--55323447	80	2.2	80	84	3	213	23	20	27	27	1.99
55331067--55331217	40	3.8	40	86	2	189	25	20	27	26	1.99
55333259--55333303	18	2.5	18	85	7	56	6	24	6	62	1.44
55333488--55333534	21	2.3	20	82	10	51	4	23	4	68	1.26
55333612--55333727	57	2.1	57	96	1	216	34	20	14	30	1.93
55334497--55334523	14	1.9	14	100	0	54	22	14	3	59	1.51
55334567--55334605	12	2.9	13	85	14	53	20	10	7	61	1.52
55335377--55335588	83	2.5	81	76	13	205	33	23	14	28	1.94
55335361--55335724	28	13.0	27	70	8	138	32	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55335513--55335808	115	2.6	113	78	4	324	32	25	12	29	1.93
55337097--55337213	29	4.1	29	80	1	146	28	29	16	25	1.97
55337100--55337243	29	5.0	29	81	1	139	29	27	15	27	1.96
55337466--55337496	16	1.9	16	93	0	53	19	25	9	45	1.81
55338726--55338757	16	2.1	16	94	5	57	12	9	34	43	1.75
55343261--55343295	18	2.0	18	88	5	54	28	8	20	42	1.81
55344298--55344331	18	1.9	18	88	5	52	20	38	23	17	1.93
55345701--55345733	16	2.1	16	94	0	57	18	9	27	45	1.79
55346205--55346245	20	2.0	21	85	4	57	60	2	4	31	1.30
55350813--55350980	40	4.2	40	85	3	232	23	22	27	26	1.99
55358793--55358920	40	3.2	40	81	5	152	23	21	27	27	1.99
55360601--55360655	24	2.3	24	80	0	65	27	29	23	20	1.99
55374301--55374429	46	2.8	46	92	0	204	20	22	27	29	1.99
55381176--55381351	46	3.8	45	81	10	203	21	21	29	27	1.98
55381173--55381343	93	1.8	93	93	0	297	21	22	29	26	1.99
55386447--55386611	44	3.6	44	77	13	174	24	28	18	29	1.98
55386406--55386616	44	4.6	45	76	14	164	22	28	18	29	1.97
55386448--55386616	93	1.8	90	90	6	268	23	28	18	28	1.98
55400591--55400779	55	3.5	53	84	5	236	21	24	18	34	1.96
55401603--55401660	30	1.9	31	85	3	82	29	25	10	34	1.89
55405148--55405356	38	5.0	38	69	21	141	30	24	15	29	1.96
55405206--55405321	48	2.4	48	90	7	175	31	25	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55405106--55405356	133	1.9	131	84	6	337	30	24	15	30	1.95
55408031--55408072	15	2.8	15	85	0	57	52	11	16	19	1.74
55409152--55409183	11	3.1	11	82	17	50	46	18	0	34	1.49
55411298--55411505	38	5.0	38	71	21	157	30	26	14	28	1.95
55411343--55411475	47	2.8	47	82	7	137	31	25	13	29	1.94
55414784--55415121	50	6.9	50	82	6	395	27	16	30	25	1.97
55420219--55420334	39	3.0	39	94	0	196	21	19	30	28	1.98
55420219--55420371	39	3.9	39	87	3	148	21	21	30	26	1.99
55420219--55420362	78	1.8	78	82	5	184	22	21	29	27	1.99
55420219--55420382	78	2.1	78	80	7	183	21	21	29	27	1.99
55421930--55421961	14	2.3	14	94	0	55	56	3	0	40	1.15
55427010--55427061	26	2.0	26	100	0	104	34	23	7	34	1.83
55429984--55430041	22	2.8	21	76	7	64	24	3	5	67	1.27
55429997--55430041	22	2.1	22	87	4	65	22	2	4	71	1.15
55430392--55430464	29	2.5	29	75	16	71	36	2	2	57	1.27
55433499--55433577	37	2.1	37	90	0	122	25	31	18	24	1.98
55433696--55434074	47	8.1	47	93	0	598	28	30	8	32	1.87
55437442--55437545	40	2.6	40	84	0	118	25	29	21	23	1.99
55437563--55437719	40	3.9	41	88	5	216	23	28	20	27	1.99
55437487--55437719	80	2.9	80	81	8	226	24	27	20	27	1.99
55438008--55438086	29	2.7	29	86	5	106	27	32	15	24	1.95
55438068--55438256	43	4.4	43	94	0	333	26	35	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55440122--55440200	37	2.1	37	90	0	122	25	31	18	24	1.98
55440319--55440697	47	8.1	47	92	0	580	28	30	8	32	1.88
55446202--55446280	28	2.8	28	86	0	104	34	11	25	29	1.91
55447923--55448166	57	4.2	57	89	2	346	19	16	33	30	1.94
55447957--55448111	29	5.4	29	70	6	136	16	16	36	30	1.92
55447982--55448136	28	5.5	28	70	6	123	18	20	32	29	1.96
55449570--55449609	17	2.2	18	91	8	64	37	5	5	52	1.45
55451271--55451486	40	5.5	40	88	3	280	24	28	24	22	1.99
55454190--55454217	13	2.2	13	100	0	56	28	0	14	57	1.38
55455633--55455958	40	8.2	40	90	0	501	24	21	25	27	1.99
55459956--55460034	28	2.8	28	86	0	104	34	11	25	29	1.91
55463543--55463598	17	3.2	17	76	11	51	82	5	5	7	0.96
55464702--55464893	64	3.0	64	92	0	312	31	18	12	37	1.88
55466916--55467100	40	4.6	39	82	5	194	24	22	27	25	2.00
55466916--55467100	79	2.3	81	82	7	218	24	22	27	25	2.00
55466969--55467123	79	2.0	79	81	7	181	26	21	27	25	1.99
55474851--55475035	79	2.3	81	83	7	227	24	22	27	24	2.00
55474852--55475035	40	4.6	40	82	9	207	25	22	27	24	2.00
55474904--55475068	79	2.1	79	83	6	201	26	21	27	24	1.99
55476383--55476890	180	2.8	179	85	3	632	29	17	25	27	1.97
55476953--55477047	43	2.2	45	84	3	131	30	13	25	30	1.94
55476582--55477216	323	2.0	323	87	0	930	30	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55476890--55477293	176	2.3	176	83	4	505	29	14	25	29	1.95
55488910--55489036	48	2.6	48	83	0	164	24	28	19	27	1.99
55488780--55489025	130	1.9	130	85	1	341	24	29	19	26	1.98
55495651--55495788	37	3.7	37	93	0	240	26	32	18	23	1.97
55495931--55497526	48	32.9	48	92	3	2471	28	27	9	35	1.87
55496412--55496728	163	1.9	163	100	0	634	26	26	10	37	1.88
55496460--55496680	115	1.9	115	100	0	442	25	26	9	38	1.87
55500836--55501114	40	7.0	40	92	0	441	26	29	22	21	1.99
55502594--55502812	48	4.6	48	95	0	384	29	29	6	33	1.83
55504408--55504631	40	5.6	40	86	7	278	24	23	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373