genome.fa.s8.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  149  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49432410--49432488	25	3.3	25	61	10	65	32	5	29	32	1.79
49432939--49433017	37	2.1	37	90	0	122	24	18	31	25	1.98
49438221--49439323	553	2.0	553	95	0	1965	30	17	22	30	1.97
49444933--49445052	22	5.3	23	73	16	74	34	17	29	19	1.94
49444946--49445052	22	4.8	23	73	15	91	34	17	29	17	1.94
49446621--49446740	60	2.0	60	96	0	222	35	11	26	26	1.91
49446809--49446935	44	2.9	45	78	5	125	26	15	22	34	1.95
49453267--49453483	39	5.6	39	93	0	380	21	21	28	29	1.99
49461084--49461418	39	8.6	39	95	0	598	20	22	27	29	1.98
49466078--49466157	38	2.1	38	86	6	110	26	30	18	25	1.98
49466276--49466697	47	9.1	47	89	4	624	28	30	9	31	1.88
49470399--49470661	40	6.6	40	85	4	309	23	26	23	25	2.00
49470386--49470661	80	3.5	80	85	3	342	24	27	22	25	2.00
49470967--49471045	29	2.7	29	86	5	106	27	32	15	24	1.95
49471027--49471172	43	3.4	43	99	0	283	26	35	15	21	1.94
49473025--49473104	38	2.1	38	86	6	110	26	30	18	25	1.98
49473223--49473597	47	8.1	47	88	4	539	28	30	8	32	1.87
49473223--49473590	134	2.7	134	88	3	493	29	30	8	32	1.87
49476574--49476751	85	2.1	85	97	0	338	38	8	26	26	1.85
49478880--49479364	47	10.1	47	87	5	673	30	12	30	26	1.93
49478880--49479364	98	5.0	94	91	3	682	30	12	30	26	1.93
49478881--49479364	145	3.3	144	91	3	688	30	12	30	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49479099--49479174	24	3.2	24	62	23	61	28	13	32	25	1.93
49479197--49479272	24	3.2	24	62	23	61	28	13	32	25	1.93
49479338--49479428	46	2.0	46	82	4	112	31	9	31	26	1.89
49479572--49479680	37	2.9	37	91	0	173	24	19	29	26	1.98
49482904--49483012	37	2.9	37	94	0	182	26	31	18	23	1.97
49483158--49483342	48	3.8	48	88	4	282	31	25	6	36	1.82
49483158--49483341	98	1.9	97	89	4	291	30	26	6	36	1.82
49483312--49483458	47	3.1	47	87	0	204	26	29	10	32	1.90
49494161--49494230	28	2.5	28	86	9	90	30	27	14	28	1.95
49498236--49498406	48	3.6	48	88	3	254	26	18	26	28	1.98
49498694--49498728	11	3.2	11	95	0	61	20	14	25	40	1.90
49502323--49502349	13	2.1	13	100	0	54	37	11	14	37	1.82
49503260--49503311	26	2.0	26	85	7	70	15	17	25	42	1.88
49503571--49503685	29	4.0	29	75	5	99	26	32	14	26	1.95
49503576--49503685	58	1.9	57	81	9	134	25	32	15	26	1.95
49506357--49506394	18	2.1	18	85	9	51	44	10	21	23	1.83
49506738--49506920	27	6.8	27	87	0	276	46	19	10	23	1.81
49507038--49507078	18	2.3	19	83	8	59	17	39	24	19	1.92
49509754--49509827	29	2.6	29	89	2	105	28	27	18	25	1.98
49511033--49511187	37	4.2	38	91	3	219	27	29	17	25	1.97
49511323--49511664	48	7.0	48	94	2	594	30	26	6	36	1.82
49515018--49515145	57	2.3	53	81	15	136	28	29	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49515334--49515720	40	9.7	40	86	0	531	27	29	20	22	1.99
49516980--49517051	37	1.9	37	88	0	108	29	29	18	23	1.97
49517198--49517928	48	15.1	48	94	1	1264	30	25	6	37	1.81
49517198--49517922	194	3.7	194	95	0	1283	30	25	6	37	1.81
49521474--49521506	16	2.1	16	94	0	57	15	6	30	48	1.69
49528164--49528252	45	2.0	45	100	0	178	48	6	22	22	1.74
49529823--49529866	22	2.0	22	86	0	61	56	4	0	38	1.20
49541693--49541762	28	2.5	27	88	9	97	31	27	14	27	1.95
49545658--49545751	28	3.3	27	83	5	116	30	31	13	23	1.93
49545928--49545958	16	1.9	16	93	0	53	12	25	16	45	1.83
49550686--49551498	48	16.9	48	94	1	1322	30	28	6	34	1.81
49555539--49555576	19	2.0	20	89	5	60	76	2	2	18	1.02
49558065--49558155	27	3.4	27	82	0	110	41	15	9	32	1.80
49558134--49558212	27	2.9	27	84	0	86	41	22	8	26	1.83
49558247--49558414	27	6.3	27	81	4	180	34	17	20	27	1.95
49558243--49558404	81	2.0	82	82	2	202	35	17	20	25	1.95
49558247--49558414	54	3.1	54	83	9	209	34	17	20	27	1.95
49562024--49562093	35	2.0	35	100	0	140	37	17	20	25	1.94
49564256--49564289	18	1.9	18	88	5	52	29	17	11	41	1.85
49565542--49565615	28	2.6	27	83	12	87	32	32	10	24	1.90
49576232--49576376	71	2.0	71	100	0	290	35	20	7	35	1.81
49579241--49579308	36	1.9	35	82	8	84	27	10	13	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49584788--49584880	38	2.4	40	77	12	104	25	24	19	30	1.98
49584768--49584894	39	3.3	39	77	4	150	23	24	18	33	1.97
49593018--49593097	37	2.2	37	86	4	108	27	28	18	25	1.98
49593216--49593534	47	6.7	47	93	2	505	28	30	8	32	1.87
49593216--49593513	96	3.1	96	93	2	496	28	29	8	32	1.87
49593216--49593534	143	2.2	140	91	2	512	28	30	8	32	1.87
49597187--49597556	40	9.2	40	90	1	537	26	28	21	23	1.99
49597245--49597357	23	5.4	23	59	23	61	24	30	23	22	1.99
49597187--49597556	120	3.1	120	92	1	591	26	28	21	23	1.99
49597864--49597942	29	2.7	29	82	5	97	27	31	15	25	1.95
49597924--49598026	43	2.4	43	96	0	197	26	34	16	22	1.95
49599892--49599970	37	2.1	37	86	4	106	26	30	17	25	1.97
49600089--49600360	47	5.7	47	92	2	420	28	30	8	31	1.87
49600089--49600339	96	2.6	96	93	1	416	28	30	8	32	1.87
49600089--49600360	143	1.9	141	90	3	429	28	30	8	31	1.87
49604009--49604129	39	3.1	38	89	4	188	20	28	20	30	1.98
49613418--49613442	12	2.1	12	100	0	50	40	32	0	28	1.57
49614798--49614916	29	4.1	29	86	1	159	31	30	12	25	1.93
49617406--49617775	27	13.7	27	77	8	306	39	20	9	30	1.84
49617650--49617775	55	2.3	53	81	9	130	40	21	8	29	1.83
49617406--49617829	135	3.1	135	81	7	317	39	20	10	30	1.86
49617768--49617874	27	4.0	27	87	0	133	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49618079--49618148	25	2.8	25	89	4	106	24	24	24	27	2.00
49618078--49618175	25	4.0	23	76	16	90	26	22	23	27	1.99
49622411--49622620	40	5.3	40	92	0	314	27	28	20	24	1.99
49622414--49622673	80	3.3	80	84	4	267	26	28	20	24	1.99
49622409--49622673	120	2.2	118	81	4	307	27	27	20	24	1.99
49630364--49630573	40	5.3	40	93	0	323	27	28	20	24	1.99
49630367--49630626	80	3.3	80	86	2	274	26	28	21	24	1.99
49630362--49630626	120	2.2	118	81	4	316	26	27	20	24	1.99
49649173--49649342	40	4.3	40	86	3	218	25	28	21	24	1.99
49675157--49675299	56	2.5	54	74	13	130	32	19	22	25	1.97
49678338--49678397	30	2.0	30	83	3	77	40	6	23	30	1.80
49679103--49679288	67	2.8	68	77	11	170	30	15	30	23	1.95
49679126--49679311	67	2.9	64	78	8	207	28	16	30	24	1.97
49692105--49692203	40	2.4	41	81	8	110	29	25	18	27	1.98
49703625--49703847	39	5.7	40	84	8	257	25	21	27	25	2.00
49703625--49703847	79	2.8	81	83	9	273	25	21	27	25	2.00
49703677--49703880	79	2.6	79	83	8	213	26	21	27	24	1.99
49708973--49709010	10	3.4	11	85	14	51	65	2	0	31	1.06
49713960--49714021	28	2.2	28	82	0	79	33	6	32	27	1.82
49715636--49715820	67	2.9	64	77	8	187	28	16	30	23	1.96
49716868--49716940	35	2.1	35	97	0	137	41	17	5	35	1.73
49718884--49718913	8	3.6	8	95	4	51	46	26	0	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49735769--49735873	55	1.9	55	82	0	129	29	30	27	12	1.93
49737779--49737807	12	2.3	13	94	5	51	13	0	0	86	0.58
49746014--49746042	13	2.2	13	100	0	58	31	0	13	55	1.39
49749581--49749832	126	2.0	126	99	0	495	34	7	21	36	1.81
49750967--49751009	10	4.1	10	80	11	50	53	27	2	16	1.55
49751668--49751702	12	2.9	12	95	0	61	20	14	22	42	1.88
49751796--49751902	44	2.5	44	80	8	123	36	26	14	22	1.93
49751740--49751900	85	1.9	85	81	7	193	34	25	14	24	1.94
49755552--49755634	31	2.7	31	96	3	152	27	26	16	28	1.97
49755847--49755899	26	2.1	26	89	3	81	26	16	20	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373