genome.fa.s8.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A08
Parameters: 2 7 7 80 10 50 1000
Length:  123748673

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   

This is table  166  of  373  ( 44737 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55504407--55504638	119	1.9	119	82	6	290	25	22	27	24	2.00
55504407--55504664	119	2.2	119	81	6	274	25	22	27	25	2.00
55510794--55511082	48	6.4	48	70	20	196	31	26	6	35	1.82
55510874--55510923	25	2.0	25	96	0	91	32	22	8	38	1.83
55510936--55510965	11	2.7	11	100	0	60	40	23	0	36	1.55
55510899--55511013	59	1.9	59	96	0	212	33	26	5	35	1.79
55510977--55511062	41	2.1	41	100	0	172	31	24	4	39	1.76
55514388--55514665	40	7.0	40	94	0	468	26	29	22	21	1.99
55515835--55515937	37	2.8	37	96	0	188	24	32	20	23	1.98
55516078--55516384	48	6.4	48	96	0	524	29	28	6	34	1.83
55516078--55516755	96	6.9	96	91	4	1068	30	27	6	35	1.82
55516078--55516755	144	4.6	144	90	5	1088	30	27	6	35	1.82
55516372--55516398	13	2.1	13	100	0	54	37	22	0	40	1.54
55516324--55516446	61	2.0	61	93	0	210	32	26	4	36	1.78
55516383--55516755	48	7.8	48	97	0	692	31	26	6	35	1.81
55520808--55520953	31	4.7	31	96	2	251	28	23	17	30	1.97
55520977--55521068	42	2.2	42	98	0	175	32	20	15	31	1.94
55521189--55521260	25	3.0	24	78	13	67	30	22	18	29	1.97
55521222--55521285	25	2.5	26	80	5	69	25	21	25	28	1.99
55525666--55525730	27	2.4	27	82	5	78	21	24	18	35	1.96
55525783--55525869	27	3.1	27	72	18	72	35	6	16	41	1.75
55525847--55526030	27	6.8	27	81	4	194	28	8	20	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55526029--55526120	27	3.4	27	82	5	114	39	7	23	29	1.83
55526009--55526145	54	2.5	53	75	10	125	34	8	24	32	1.86
55527652--55527869	48	4.5	48	79	4	170	22	27	21	28	1.99
55527851--55527890	21	1.9	21	94	0	71	22	25	20	32	1.98
55527801--55527938	69	2.0	69	84	5	181	24	26	17	31	1.97
55527872--55527991	48	2.5	48	83	0	141	25	27	18	29	1.98
55530140--55530201	27	2.2	28	88	2	90	33	25	16	24	1.95
55530285--55530325	18	2.3	18	80	12	50	53	0	2	43	1.13
55537414--55537458	16	2.9	16	83	9	67	15	0	22	62	1.33
55537414--55537458	14	3.0	15	87	6	65	15	0	22	62	1.33
55538883--55538954	36	2.0	36	100	0	144	22	11	22	44	1.84
55540712--55541001	27	10.7	27	82	1	296	39	20	9	30	1.84
55540981--55541055	27	2.8	26	69	15	71	37	25	8	29	1.84
55541037--55541372	27	12.5	27	89	1	469	35	20	21	23	1.96
55541695--55541750	26	2.2	26	96	0	103	30	7	25	37	1.82
55544797--55544861	22	3.0	22	80	8	78	20	23	23	33	1.97
55545020--55545077	27	2.1	27	84	6	73	15	20	25	37	1.92
55545020--55545121	27	3.8	27	77	5	71	20	22	20	36	1.95
55545266--55545329	31	2.1	31	93	0	110	25	15	10	48	1.77
55545287--55545356	25	2.8	25	86	0	104	22	20	10	47	1.79
55545388--55545436	24	2.0	24	84	7	64	28	16	26	28	1.97
55549041--55549343	40	7.6	40	90	2	396	24	20	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55557059--55557278	36	5.9	39	83	11	248	24	19	30	26	1.98
55557045--55557288	37	6.5	39	83	12	262	25	18	29	26	1.98
55577062--55577088	13	2.1	13	100	0	54	37	14	0	48	1.45
55584479--55584709	47	4.9	47	94	0	365	32	12	30	25	1.92
55584702--55584806	46	2.3	46	83	1	122	35	11	26	26	1.90
55586310--55586621	40	7.8	40	93	0	498	24	22	28	24	1.99
55590753--55590897	47	3.1	47	91	0	227	33	11	29	25	1.90
55590824--55591003	46	3.9	46	81	2	155	35	9	28	26	1.88
55590871--55591007	46	3.0	46	84	0	175	34	8	29	27	1.87
55593980--55594105	39	3.2	39	88	0	171	28	27	19	23	1.99
55601901--55601933	14	2.5	13	90	9	50	39	27	9	24	1.85
55601901--55602190	50	5.8	50	73	14	222	32	27	16	24	1.96
55601895--55602192	100	3.0	102	78	7	304	32	27	16	24	1.96
55601881--55602172	150	1.9	150	92	0	485	31	27	16	24	1.96
55602804--55602862	30	2.0	30	93	0	100	27	28	6	37	1.82
55605155--55605192	15	2.5	15	87	8	51	47	18	18	15	1.83
55608711--55609056	50	6.9	50	75	7	306	30	26	16	26	1.97
55608725--55609054	101	3.3	101	83	4	391	31	25	16	25	1.97
55609404--55609450	19	2.3	20	82	10	60	51	12	0	36	1.40
55609671--55609728	30	1.9	30	85	0	80	22	27	10	39	1.86
55612030--55612075	15	3.1	14	87	9	65	52	13	19	15	1.75
55615574--55615761	51	3.7	50	71	10	143	32	21	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55615582--55615803	101	2.2	101	86	1	302	32	22	18	26	1.97
55616163--55616209	19	2.3	20	82	10	60	48	14	0	36	1.44
55625593--55625704	43	2.6	43	73	6	111	25	16	26	32	1.96
55625674--55625773	51	2.0	51	85	0	137	24	16	26	34	1.95
55627155--55627255	42	2.4	43	84	3	132	30	16	22	29	1.96
55628563--55628609	23	2.0	23	100	0	94	25	4	12	57	1.54
55630294--55630399	43	2.5	43	84	3	133	27	14	23	34	1.93
55630305--55630399	43	2.2	43	88	0	136	27	15	23	33	1.95
55630305--55630448	43	3.4	43	78	10	118	29	16	22	30	1.96
55638448--55638556	43	2.6	42	78	11	123	29	18	24	27	1.98
55642566--55642648	43	1.9	43	92	0	139	30	32	16	20	1.95
55650148--55650341	47	4.1	47	89	0	289	32	11	28	26	1.92
55650177--55650248	22	3.1	22	64	24	58	33	13	29	23	1.93
55650312--55650495	98	1.9	96	90	2	296	35	6	26	31	1.82
55650311--55650495	48	3.8	48	87	2	280	35	6	26	31	1.82
55650641--55650785	37	3.9	37	92	0	236	24	19	30	26	1.98
55652056--55652287	40	5.8	40	93	0	365	23	22	28	25	1.99
55656122--55656315	47	4.1	47	87	0	271	32	10	30	25	1.90
55656285--55656469	48	3.8	48	88	2	289	36	5	25	31	1.80
55656286--55656469	98	1.9	96	90	2	296	36	5	26	30	1.80
55656617--55656759	37	3.9	37	93	0	241	23	19	31	25	1.98
55658030--55658261	40	5.8	40	91	0	347	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55662121--55662314	47	4.1	47	88	0	280	32	11	28	27	1.91
55662150--55662221	22	3.1	22	64	24	58	33	13	29	23	1.93
55662284--55662420	50	2.8	48	86	8	204	35	6	27	30	1.82
55662566--55662671	37	2.9	37	91	0	167	23	17	32	26	1.97
55664395--55664419	8	3.1	8	100	0	50	28	12	12	48	1.76
55670623--55670649	13	2.1	13	100	0	54	14	33	37	14	1.88
55676653--55676711	29	2.0	30	83	3	75	38	6	23	30	1.81
55680094--55680126	17	1.9	17	93	0	57	33	0	12	54	1.37
55691620--55691660	17	2.4	17	91	4	64	14	51	17	17	1.77
55691795--55691834	8	4.8	8	87	9	53	30	0	0	70	0.88
55693889--55693914	12	2.2	12	100	0	52	38	0	0	61	0.96
55693881--55693930	22	2.2	23	82	3	57	40	0	6	54	1.25
55697947--55698033	39	2.2	39	89	4	131	22	22	26	27	2.00
55701823--55701849	13	2.1	13	100	0	54	14	29	33	22	1.94
55711208--55711253	19	2.4	19	85	7	58	10	10	21	56	1.64
55711199--55711236	19	2.0	19	94	0	67	10	13	21	55	1.67
55725292--55725373	40	2.0	40	92	0	137	62	6	8	23	1.46
55725302--55725367	22	3.2	22	66	16	68	60	7	6	25	1.47
55730644--55730710	33	2.0	34	85	11	93	67	7	10	14	1.42
55735749--55735856	41	2.7	40	77	7	112	24	24	24	27	2.00
55735749--55735843	41	2.3	41	82	5	113	22	21	25	31	1.98
55735832--55736076	74	3.3	74	93	0	393	31	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55736656--55736695	14	2.9	14	80	0	53	20	0	27	52	1.46
55736656--55736711	28	2.0	28	82	6	69	23	0	25	51	1.48
55736737--55736763	14	1.9	14	100	0	54	14	0	44	40	1.46
55736853--55736930	29	2.7	29	82	6	86	24	1	24	50	1.57
55737065--55737131	7	9.6	7	78	4	64	11	2	40	44	1.56
55737217--55737284	7	9.6	7	79	3	73	19	4	33	42	1.71
55738655--55738700	24	1.9	24	100	0	92	17	15	8	58	1.61
55740787--55740905	9	12.6	9	72	10	76	48	19	0	31	1.55
55740811--55740903	30	3.2	30	80	9	102	47	21	1	30	1.58
55746453--55746496	21	2.1	21	91	0	70	20	20	59	0	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373