Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  101  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31502434--31502487
28
2.0
27
85
3
72
59
3
5
31
1.38
31502672--31502712
19
2.2
19
86
4
57
70
4
2
21
1.18
31502638--31502711
31
2.4
31
78
13
82
66
4
2
27
1.23
31505940--31506046
37
2.9
37
86
5
162
25
13
50
11
1.74
31507017--31507136
14
8.4
14
69
7
71
43
30
0
25
1.60
31507024--31507073
21
2.3
23
80
16
63
40
38
0
22
1.54
31513517--31513588
24
2.9
24
87
4
99
31
16
23
27
1.96
31513519--31513647
23
5.5
24
73
14
99
33
16
21
28
1.95
31513517--31513646
46
2.8
45
81
9
127
32
16
22
28
1.96
31516364--31516468
47
2.2
47
94
0
183
28
29
7
34
1.85
31524369--31524407
20
1.9
20
84
5
51
43
2
5
48
1.38
31524563--31524604
17
2.5
17
80
3
50
64
7
26
2
1.32
31528711--31528822
23
4.8
22
73
13
91
33
18
19
27
1.96
31530906--31530937
15
2.1
15
94
0
55
78
6
3
12
1.06
31531708--31531775
29
2.3
29
87
0
91
39
10
25
25
1.87
31531760--31531982
30
7.5
30
70
11
165
41
13
25
20
1.88
31531793--31532045
59
4.2
60
77
7
248
39
12
26
21
1.89
31549577--31549752
51
3.5
48
80
6
199
30
25
19
25
1.98
31549571--31549756
101
1.9
100
90
1
300
30
25
19
24
1.98
31551866--31551935
29
2.4
29
85
0
95
34
8
27
30
1.87
31551924--31552114
30
6.4
30
77
7
192
40
12
28
18
1.86
31551888--31552084
60
3.3
57
77
8
191
38
12
28
20
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31551921--31552114
60
3.2
60
77
9
216
40
11
27
19
1.87
31551957--31552135
90
2.0
90
86
2
252
39
13
27
19
1.90
31554244--31554321
29
2.7
28
75
15
68
42
10
25
21
1.84
31554283--31554441
61
2.6
61
87
2
205
43
10
22
23
1.84
31554341--31554473
30
4.4
31
68
7
92
43
9
24
22
1.82
31554283--31554473
61
3.2
61
80
5
167
43
10
23
22
1.83
31554464--31554532
30
2.3
30
79
0
75
39
10
23
27
1.87
31556218--31556259
18
2.3
18
80
8
50
26
38
0
35
1.57
31562469--31562598
28
4.7
28
80
7
113
56
7
11
23
1.60
31562502--31562601
28
3.7
27
80
9
123
57
8
14
21
1.62
31565889--31566147
56
4.6
56
90
0
356
26
16
23
33
1.95
31575473--31575532
29
2.1
29
96
0
111
41
5
11
41
1.63
31576972--31577002
15
2.1
15
100
0
62
38
6
32
22
1.80
31577159--31577197
18
2.3
17
86
8
53
38
5
12
43
1.65
31577939--31577968
15
2.0
15
93
0
51
23
6
46
23
1.75
31580007--31580037
15
2.1
15
100
0
62
38
6
32
22
1.80
31580194--31580232
18
2.3
17
86
8
53
38
5
12
43
1.65
31581735--31581813
30
2.7
30
75
11
83
22
17
10
49
1.77
31582724--31582782
29
2.0
29
93
0
100
35
15
6
42
1.73
31597699--31597761
21
3.2
20
82
10
67
11
7
3
77
1.08
31597739--31597776
8
4.6
8
87
6
58
13
0
0
86
0.56
31598270--31598294
12
2.1
12
100
0
50
16
32
16
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31598703--31598734
16
2.0
16
93
0
55
53
0
0
46
1.00
31599423--31599483
13
4.7
13
81
0
77
36
26
6
31
1.82
31601938--31601976
20
2.0
20
84
0
51
12
25
51
10
1.71
31602491--31602880
51
7.6
50
72
15
241
31
4
4
59
1.38
31602525--31602744
103
2.2
102
79
8
234
30
4
5
60
1.37
31602502--31603048
26
21.5
26
70
12
323
29
5
4
60
1.39
31604264--31604300
18
2.1
18
100
0
74
21
21
10
45
1.82
31609109--31609142
7
4.9
7
100
0
68
44
14
0
41
1.45
31609863--31609990
32
4.0
32
93
0
229
34
10
9
45
1.72
31621452--31621578
39
3.3
39
89
1
193
32
21
25
21
1.98
31621451--31621604
78
2.0
75
82
6
184
31
22
25
20
1.98
31629465--31629592
39
3.3
39
91
0
202
32
21
25
21
1.98
31629464--31629618
78
2.0
76
83
5
195
30
21
26
20
1.98
31644496--31644608
56
2.1
55
80
8
124
42
7
7
42
1.61
31653596--31653635
21
1.9
21
89
0
62
22
12
12
52
1.72
31657618--31657647
15
1.9
15
93
6
51
30
0
0
70
0.88
31657711--31657755
18
2.4
19
82
14
58
31
6
0
62
1.21
31661657--31661697
20
2.1
19
86
4
55
24
24
9
41
1.85
31669402--31669739
44
7.7
44
72
9
213
32
19
21
26
1.97
31669404--31669752
132
2.6
133
78
8
338
32
18
21
27
1.96
31671259--31671298
15
2.6
16
92
4
64
30
2
0
67
1.04
31671357--31671396
18
2.2
18
86
8
55
30
7
0
62
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31671366--31671401
18
2.0
17
89
10
54
27
5
0
66
1.13
31673869--31673902
10
3.3
10
84
8
50
11
8
11
67
1.42
31675493--31675524
15
2.0
17
88
11
50
43
31
0
25
1.55
31682095--31682146
20
2.6
20
73
8
52
55
7
32
3
1.46
31682584--31682610
13
2.1
13
100
0
54
51
0
7
40
1.30
31683528--31683679
18
8.4
18
85
1
180
38
14
13
33
1.86
31685650--31685751
52
2.0
52
90
3
161
18
25
3
51
1.63
31711822--31711984
87
1.9
88
90
1
265
39
8
12
39
1.73
31714327--31714356
2
15.0
2
100
0
60
50
0
0
50
1.00
31717868--31717980
28
4.1
28
88
1
165
35
13
23
27
1.92
31717872--31717980
56
2.0
55
94
1
191
33
13
23
28
1.93
31720565--31720602
18
2.1
18
90
0
58
28
18
26
26
1.98
31720720--31720765
22
2.2
21
88
7
67
45
17
13
23
1.83
31731684--31731742
30
2.0
30
83
6
75
55
6
0
37
1.26
31733911--31733948
15
2.5
15
87
8
51
18
0
5
76
0.97
31733922--31733949
5
5.6
5
100
0
56
17
0
0
82
0.68
31742831--31743020
50
3.8
49
84
2
227
30
26
17
25
1.97
31742833--31743028
101
2.0
99
84
2
257
30
27
17
25
1.98
31748699--31748827
46
2.8
46
94
2
215
19
20
29
30
1.97
31756180--31756308
46
2.8
46
92
2
206
20
20
28
30
1.98
31773902--31773954
26
2.0
26
92
0
88
24
24
20
30
1.99
31776772--31776814
22
2.0
22
81
9
52
34
13
23
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31779988--31780095
44
2.4
44
85
3
135
30
23
12
33
1.92
31785372--31785404
6
5.5
6
96
0
57
27
0
54
18
1.44
31788504--31788541
18
2.1
18
95
0
67
28
26
10
34
1.90
31793351--31793398
19
2.6
19
86
3
71
39
2
12
45
1.54
31797275--31797322
19
2.6
19
86
3
71
39
2
12
45
1.54
31814117--31814159
18
2.4
18
88
7
61
46
0
0
53
1.00
31815072--31815178
53
2.0
53
94
0
187
29
17
14
38
1.89
31818976--31819029
22
2.5
22
76
11
56
44
0
3
51
1.19
31818980--31819039
28
2.1
27
82
11
68
50
3
3
43
1.35
31822721--31822759
11
3.4
11
86
10
51
28
5
0
66
1.12
31822737--31822796
19
3.2
18
79
9
66
30
1
1
66
1.11
31823073--31823132
18
3.3
19
68
17
54
28
1
6
63
1.29
31823413--31823489
33
2.3
33
93
2
136
25
10
7
55
1.60
31824963--31825001
20
2.0
20
85
10
53
15
0
5
79
0.90
31824974--31825001
14
2.0
14
100
0
56
14
0
0
85
0.59
31826095--31826148
19
2.8
20
83
5
67
44
11
18
25
1.83
31830819--31830878
30
2.0
30
90
0
93
30
25
8
36
1.85
31882431--31882535
39
2.7
39
95
0
183
30
20
24
23
1.99
31882780--31882817
2
19.0
2
94
0
67
2
0
47
50
1.15
31888625--31888872
9
28.4
9
77
9
210
37
2
13
47
1.55
31888625--31888874
53
4.8
54
81
7
268
36
2
14
47
1.55
31888678--31888747
23
2.9
23
74
14
61
38
4
12
44
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31888625--31888872
44
5.7
44
83
6
281
37
2
13
47
1.55
31888984--31889068
14
5.9
15
75
8
95
54
0
1
44
1.07
31888996--31889068
29
2.6
29
93
2
121
52
0
1
46
1.09
31889242--31889288
24
2.0
24
91
0
76
44
8
19
27
1.79
31889336--31889533
64
3.1
64
96
0
360
45
3
12
38
1.58
31890288--31890390
40
2.6
40
92
0
179
61
13
12
12
1.58
31890366--31890391
7
3.7
7
100
0
52
69
15
15
0
1.20
31890701--31890743
21
2.0
21
82
8
52
58
9
0
32
1.30
31893750--31893783
13
2.5
13
85
4
50
44
23
0
32
1.54
31893898--31893940
19
2.3
19
100
0
86
48
23
0
27
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349