Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  337  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111587072--111587550
119
4.0
119
92
1
762
30
18
16
34
1.93
111595335--111595379
15
3.1
15
79
17
51
40
13
24
22
1.90
111599136--111599161
7
3.7
7
100
0
52
57
0
0
42
0.98
111599341--111599383
20
2.2
19
88
12
61
58
2
0
39
1.11
111599446--111599495
12
3.9
13
71
12
50
60
0
6
34
1.21
111599534--111599581
20
2.3
20
85
7
60
58
0
2
39
1.10
111602832--111603054
48
4.8
48
77
12
214
27
20
28
22
1.99
111607109--111607166
30
1.9
30
86
6
82
17
31
32
18
1.94
111608938--111609038
29
3.3
29
66
20
78
50
18
8
21
1.74
111608908--111609036
64
2.0
64
93
0
222
48
19
8
23
1.76
111617021--111617067
17
2.8
17
78
15
53
34
6
0
59
1.23
111617957--111618034
39
2.0
39
94
0
138
20
23
20
35
1.96
111619365--111619400
13
2.8
13
95
0
63
33
22
16
27
1.95
111621870--111621913
22
2.0
22
86
4
61
38
18
6
36
1.77
111621906--111622032
18
7.5
15
79
16
78
37
14
11
37
1.82
111621892--111622034
54
2.7
54
96
3
263
37
14
11
37
1.82
111621885--111622035
71
2.1
71
88
10
229
36
15
10
37
1.82
111621892--111622034
19
7.9
19
87
12
230
37
14
11
37
1.82
111622389--111622579
45
4.3
45
85
1
249
24
26
14
34
1.94
111622596--111623122
78
6.8
78
90
3
803
24
25
18
31
1.98
111622596--111623122
156
3.4
156
94
0
914
24
25
18
31
1.98
111631337--111631370
17
1.9
18
88
5
52
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111631626--111631755
19
6.7
21
80
12
68
39
16
8
36
1.79
111631626--111631683
22
2.6
22
81
7
64
41
17
5
36
1.72
111631662--111631787
35
3.5
36
89
7
193
36
15
11
37
1.83
111631662--111631787
54
2.3
54
100
0
252
36
15
11
37
1.83
111631676--111631785
17
6.5
15
87
8
87
36
15
10
37
1.83
111631662--111631787
19
6.9
19
89
10
210
36
15
11
37
1.83
111635996--111636053
30
1.9
30
89
0
89
12
29
37
20
1.89
111638105--111638153
21
2.4
21
83
6
66
79
0
0
20
0.73
111638104--111638154
5
10.2
5
76
16
52
76
0
0
23
0.79
111643651--111643677
7
3.9
7
100
0
54
44
0
25
29
1.54
111646781--111646832
24
2.2
25
90
10
83
26
7
3
61
1.41
111658530--111658572
22
2.0
22
95
0
77
34
9
6
48
1.62
111658707--111658735
10
3.0
10
95
5
51
51
0
6
41
1.28
111667679--111667768
45
2.0
45
97
0
171
41
8
21
28
1.83
111669223--111669475
98
2.6
97
83
8
298
39
15
15
29
1.88
111678823--111678928
54
2.0
53
96
1
194
33
13
12
41
1.81
111687761--111687804
20
2.3
19
84
11
54
40
9
13
36
1.76
111687838--111687881
20
2.2
20
87
0
61
40
6
11
40
1.68
111687791--111687881
40
2.3
40
82
0
110
40
5
13
40
1.67
111687974--111688024
20
2.5
20
84
6
68
31
3
17
47
1.66
111688083--111688234
20
7.7
20
67
12
55
43
5
12
38
1.65
111688123--111688234
40
2.9
40
79
11
126
43
5
11
39
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111693004--111693059
16
3.6
16
79
13
55
30
0
7
62
1.22
111701154--111701197
17
2.6
17
89
3
63
84
0
6
9
0.79
111702373--111702411
19
2.1
19
100
0
78
33
20
10
35
1.86
111708899--111708994
42
2.3
43
83
5
124
29
16
23
30
1.96
111711676--111711732
5
10.6
5
81
10
51
75
5
0
19
0.99
111712372--111712408
18
2.1
18
100
0
74
32
21
10
35
1.88
111713364--111713404
20
2.0
20
85
4
55
60
2
4
31
1.30
111715786--111715851
24
2.6
25
76
19
66
34
7
0
57
1.27
111715839--111715910
23
3.1
23
78
4
74
30
4
1
63
1.21
111726794--111726931
68
2.0
69
84
4
181
44
23
9
22
1.81
111729351--111729423
33
2.2
33
95
2
130
42
12
0
45
1.41
111731224--111731337
57
2.0
55
81
10
131
17
18
12
51
1.75
111734915--111734954
11
3.5
11
80
6
53
62
5
0
32
1.17
111734916--111734956
12
3.5
12
80
6
57
63
4
0
31
1.15
111734907--111734957
23
2.2
23
100
0
102
62
3
0
33
1.13
111736846--111737252
178
2.3
176
78
5
437
30
24
15
29
1.96
111739448--111739576
50
2.5
51
86
7
190
35
16
22
25
1.94
111739547--111739700
31
5.0
31
88
0
209
27
17
27
27
1.98
111741272--111741336
31
2.1
31
85
0
85
38
6
9
46
1.61
111746567--111746613
15
3.3
14
80
11
51
51
0
0
48
1.00
111746571--111746607
16
2.3
16
86
13
58
59
0
0
40
0.97
111747643--111747682
16
2.5
17
84
12
57
40
0
2
57
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111747913--111747973
33
1.9
30
83
9
77
40
0
3
55
1.16
111748231--111748272
15
2.8
15
79
20
52
66
0
9
23
1.21
111749015--111749106
44
2.1
44
84
8
116
20
20
23
34
1.96
111749077--111749195
47
2.5
47
73
5
105
23
20
23
32
1.98
111750420--111750487
27
2.4
28
80
9
75
39
0
0
60
0.97
111763774--111763834
18
3.4
18
74
17
56
29
4
9
55
1.53
111763792--111763831
12
3.3
12
89
6
55
30
5
10
55
1.54
111763774--111763832
12
4.9
12
74
15
50
27
5
10
57
1.52
111763958--111764125
47
3.6
47
90
0
255
26
12
17
44
1.84
111764100--111764150
25
2.0
25
96
0
93
21
11
17
49
1.79
111764421--111764464
15
2.9
15
86
0
61
15
11
36
36
1.84
111766108--111766241
42
3.2
42
80
8
150
26
11
19
42
1.86
111766218--111766275
26
2.2
26
78
0
62
29
6
12
51
1.65
111766956--111767009
21
2.6
21
87
0
72
25
37
11
25
1.89
111767398--111767453
23
2.4
24
85
5
71
30
12
12
44
1.79
111767912--111767988
38
2.0
38
97
0
145
29
22
15
32
1.95
111768108--111768143
12
3.1
12
96
4
65
0
38
0
61
0.96
111768104--111768155
3
17.3
3
77
15
54
0
32
0
67
0.91
111773311--111773413
31
3.4
30
82
6
109
43
0
4
50
1.30
111780402--111780463
28
2.4
27
82
12
76
43
3
1
51
1.27
111782716--111782749
18
2.0
16
88
11
50
52
5
0
41
1.25
111786319--111786425
8
11.9
9
75
12
69
70
0
0
28
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111786319--111786365
20
2.3
21
85
10
62
72
0
0
27
0.85
111786321--111786381
19
3.2
19
80
13
72
75
1
0
22
0.89
111786312--111786375
30
2.1
30
85
0
83
70
1
0
28
0.97
111786928--111786971
22
2.0
22
90
0
70
4
11
11
72
1.25
111786930--111786977
22
2.2
22
84
0
60
4
12
14
68
1.34
111787403--111787444
12
3.6
11
87
9
57
23
2
4
69
1.20
111787451--111787505
27
2.0
27
85
0
74
29
3
5
61
1.35
111789190--111789226
12
3.1
12
88
0
56
59
8
32
0
1.27
111789190--111789224
18
1.9
18
88
0
52
57
8
34
0
1.29
111790092--111790116
10
2.5
10
100
0
50
48
8
0
44
1.32
111790177--111790217
21
2.0
21
85
9
57
56
0
0
43
0.99
111790173--111790220
20
2.4
20
80
16
55
54
0
0
45
0.99
111795525--111795605
31
2.7
30
87
9
112
25
11
8
54
1.64
111799159--111799222
30
2.2
30
82
2
76
46
1
3
48
1.27
111800561--111800589
2
14.5
2
100
0
58
0
0
51
48
1.00
111800589--111800615
2
13.5
2
100
0
54
48
0
51
0
1.00
111801730--111801758
6
4.8
6
100
0
58
17
0
31
51
1.45
111805440--111805503
5
12.6
5
76
14
60
56
1
1
40
1.18
111805440--111805483
21
2.0
22
86
4
63
56
0
2
40
1.11
111805451--111805510
29
2.1
29
83
0
75
58
1
1
38
1.18
111806107--111806163
29
2.0
29
100
0
114
59
10
14
15
1.60
111806111--111806158
15
3.3
15
73
26
57
60
10
14
14
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111806114--111806161
14
3.4
14
74
25
55
62
8
12
16
1.53
111808558--111808834
3
91.7
3
67
18
89
62
2
5
29
1.32
111808628--111808834
23
8.6
23
68
15
89
62
2
4
29
1.31
111808753--111808818
34
1.9
35
84
9
91
57
3
7
31
1.42
111808786--111808833
19
2.6
18
83
9
60
62
0
4
33
1.14
111808771--111808835
16
3.8
17
80
11
69
58
1
9
30
1.39
111809995--111810286
87
3.3
87
85
1
379
22
22
19
35
1.96
111809912--111810286
174
2.2
169
83
5
459
21
22
20
36
1.96
111810226--111810327
42
2.4
42
83
1
123
23
17
20
38
1.93
111810157--111810414
129
2.0
128
90
0
399
21
21
21
35
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349