Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  281  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93741782--93742057
35
8.1
35
72
15
159
48
11
1
38
1.49
93741782--93742024
44
5.3
43
75
12
200
47
11
1
39
1.48
93741723--93742090
158
2.3
158
87
3
508
47
12
1
37
1.52
93741922--93742040
44
2.7
44
92
0
175
47
12
3
36
1.58
93742078--93742131
26
2.1
26
100
0
108
46
14
3
35
1.63
93741958--93742110
53
2.9
51
75
13
143
49
11
1
37
1.51
93745456--93745489
16
2.1
16
100
0
68
20
29
11
38
1.88
93747329--93747357
14
2.1
14
93
6
51
34
0
6
58
1.25
93747772--93747826
21
2.6
21
85
0
83
27
18
50
3
1.63
93748210--93748324
43
2.7
43
79
4
117
32
26
13
27
1.94
93748210--93748309
42
2.3
43
83
5
114
35
28
12
25
1.91
93750686--93750733
21
2.3
21
74
0
51
22
22
8
45
1.79
93751276--93751309
16
2.1
17
88
5
52
41
0
0
58
0.98
93756088--93756213
46
2.7
46
80
14
143
32
17
26
23
1.97
93758330--93758435
25
4.2
25
75
6
90
34
20
24
19
1.96
93764079--93764128
20
2.5
20
83
3
64
40
12
2
46
1.52
93768457--93768495
21
1.9
20
84
5
51
41
15
0
43
1.46
93774303--93774335
16
2.0
17
94
5
59
72
24
0
3
0.98
93786405--93786455
25
2.0
25
92
0
84
31
21
17
29
1.96
93787210--93787387
45
3.9
45
87
4
241
21
15
27
35
1.93
93787210--93787505
45
6.8
43
80
4
211
22
15
28
33
1.95
93787287--93787500
43
4.9
42
80
5
144
23
15
28
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93789068--93789191
39
3.2
39
90
0
185
25
28
21
24
1.99
93789030--93789185
78
2.0
77
80
6
172
26
28
21
23
1.99
93804152--93804220
21
3.3
21
75
4
68
18
21
17
42
1.90
93804166--93804230
21
3.1
21
80
4
69
15
23
18
43
1.88
93806672--93806800
48
2.6
48
87
2
177
31
20
25
22
1.98
93806768--93806986
49
4.6
47
81
9
205
27
19
28
24
1.98
93806763--93806986
98
2.3
94
82
8
265
27
19
28
24
1.98
93813589--93813717
49
2.6
49
82
2
152
23
27
19
30
1.98
93827006--93827189
40
4.6
41
82
9
213
23
22
28
25
1.99
93827059--93827212
79
2.0
78
83
8
197
25
21
27
25
1.99
93832292--93832414
49
2.5
49
81
7
151
22
26
21
29
1.99
93832419--93832480
31
2.0
31
96
0
115
30
25
20
22
1.98
93832338--93832573
124
1.9
124
98
0
454
26
26
20
26
1.99
93838237--93838296
29
2.1
28
81
12
68
21
41
16
20
1.90
93845869--93845931
12
5.1
12
74
24
51
50
1
1
46
1.20
93845796--93845926
59
2.2
58
83
4
165
42
3
3
50
1.36
93847598--93847680
40
2.0
41
95
2
150
32
15
16
34
1.91
93848457--93848526
35
2.0
35
100
0
140
25
25
8
40
1.84
93849766--93849997
49
4.7
49
81
7
270
31
26
16
26
1.96
93853953--93854010
18
3.4
18
88
6
77
29
8
24
37
1.85
93854919--93854984
28
2.4
28
82
2
80
36
21
22
19
1.95
93857623--93857676
28
2.0
27
88
3
81
33
20
25
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93861608--93861703
50
1.9
50
95
0
174
29
17
26
27
1.98
93867094--93867157
34
1.9
33
87
3
92
20
23
25
31
1.98
93869845--93869994
67
2.2
67
81
8
171
32
17
28
21
1.96
93869869--93870052
67
2.8
64
77
8
194
29
17
29
22
1.97
93877140--93877227
23
3.8
23
80
5
106
19
19
19
42
1.90
93884392--93884453
22
2.8
22
75
0
70
29
24
27
19
1.98
93887002--93887035
14
2.3
15
95
5
61
76
0
0
23
0.79
93887002--93887035
5
7.0
5
86
6
52
76
0
0
23
0.79
93896186--93896264
29
2.7
27
86
9
104
26
16
29
27
1.97
93896217--93896543
173
1.9
174
93
0
566
30
14
24
31
1.94
93904291--93904369
29
2.7
27
86
9
104
26
16
29
27
1.97
93907514--93907552
19
2.1
19
100
0
78
15
15
15
53
1.73
93915151--93915188
14
2.9
13
81
11
51
57
10
13
18
1.63
93924462--93924500
19
2.1
19
95
0
69
28
7
25
38
1.83
93924504--93924733
40
5.8
40
96
0
417
30
20
27
21
1.98
93933204--93933391
40
4.7
40
95
0
331
31
19
27
21
1.98
93937029--93937066
18
2.2
18
86
9
53
68
0
7
23
1.16
93941881--93941913
11
3.1
11
91
4
50
42
3
0
54
1.15
93942088--93942112
12
2.1
12
100
0
50
92
0
8
0
0.40
93947887--93947957
34
2.1
34
81
0
79
25
11
25
38
1.89
93949841--93949866
13
2.0
13
100
0
52
84
0
0
15
0.62
93952446--93952565
42
2.9
43
76
13
106
32
23
15
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93953624--93953649
13
2.0
13
100
0
52
53
15
0
30
1.42
93955064--93955156
44
2.1
44
84
4
116
26
19
19
34
1.96
93955176--93955438
51
5.4
51
70
12
176
31
17
16
34
1.92
93955076--93956030
44
20.8
45
70
13
258
30
18
17
34
1.93
93955305--93955480
95
1.8
96
83
1
237
30
21
17
30
1.96
93955504--93956031
232
2.3
232
82
1
637
29
17
18
34
1.94
93955906--93956032
45
2.8
45
86
3
186
30
17
17
34
1.93
93959083--93959111
12
2.3
13
94
5
51
58
13
6
20
1.58
93959951--93960066
43
2.7
42
80
7
144
30
15
24
30
1.96
93967315--93967352
19
2.0
20
89
5
60
44
5
21
28
1.73
93969044--93969121
36
2.2
35
88
6
120
24
29
20
25
1.99
93969258--93969394
48
2.9
48
96
0
247
29
29
7
33
1.84
93974012--93974065
4
13.8
4
80
3
56
68
1
5
24
1.21
93978160--93978248
29
3.1
29
86
1
117
23
12
31
32
1.92
93984371--93984586
46
4.7
45
79
10
179
27
17
31
24
1.97
93984368--93984629
94
2.8
93
76
11
234
28
17
31
23
1.97
93994881--93995242
47
7.7
47
72
17
220
27
18
31
23
1.97
93994881--93995242
46
7.6
48
76
11
272
27
18
31
23
1.97
93994881--93995242
94
3.8
97
75
13
285
27
18
31
23
1.97
94000365--94000411
20
2.3
20
78
10
51
21
8
8
61
1.51
94006210--94006352
38
3.7
38
77
3
153
32
28
21
17
1.96
94015226--94015450
46
4.9
45
76
10
199
24
29
16
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94027417--94027597
40
4.5
40
90
1
265
25
28
20
24
1.99
94031663--94031841
28
6.4
28
91
2
245
25
12
28
33
1.93
94039141--94039220
30
2.7
30
82
0
115
21
23
11
43
1.84
94039199--94039340
30
4.7
29
79
5
122
26
25
13
35
1.93
94042697--94042822
27
4.7
27
81
2
110
31
23
12
32
1.92
94044505--94044559
27
2.0
27
100
0
110
21
7
18
52
1.69
94046046--94046228
66
2.8
64
76
7
183
28
16
31
24
1.96
94050423--94050606
67
2.8
64
76
8
185
29
16
30
23
1.96
94052960--94053130
92
1.8
93
91
1
281
27
28
22
22
1.99
94052952--94053126
46
3.8
46
78
11
196
28
27
21
22
1.99
94055504--94055559
15
3.7
15
86
9
87
60
10
16
12
1.58
94061153--94061373
40
5.6
40
85
5
245
25
21
27
25
1.99
94061228--94061408
78
2.3
78
83
3
222
26
20
27
24
1.99
94066379--94066722
47
7.3
47
89
1
526
27
28
8
35
1.86
94072183--94072244
7
9.0
7
77
8
65
43
30
0
25
1.55
94072196--94072271
27
2.8
26
77
18
75
40
28
1
28
1.65
94085355--94085385
14
2.2
14
100
0
62
41
38
19
0
1.51
94085718--94086207
242
2.0
242
95
0
872
37
26
8
27
1.85
94088069--94088306
49
4.8
49
83
2
278
29
26
17
25
1.98
94088069--94088312
101
2.5
98
82
2
290
29
27
18
25
1.98
94096242--94096489
40
6.2
40
90
2
374
27
28
21
22
1.99
94100172--94100225
21
2.6
21
87
0
81
27
7
35
29
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94106093--94106440
175
2.0
175
88
3
522
23
29
22
23
1.99
94119046--94119163
43
2.8
42
79
5
121
30
19
15
34
1.93
94122244--94122275
16
2.0
16
93
0
55
50
34
6
9
1.60
94123748--94123862
29
4.0
29
84
2
135
27
16
27
27
1.97
94123754--94123868
57
2.0
57
84
3
151
28
17
26
26
1.98
94127917--94127967
24
2.1
24
81
0
57
56
17
17
7
1.63
94128086--94128120
17
2.0
18
88
5
54
17
22
40
20
1.92
94128178--94128292
29
4.0
28
80
2
113
28
14
28
27
1.95
94132155--94132179
7
3.6
7
100
0
50
40
16
12
32
1.84
94132462--94132559
31
2.9
34
85
11
139
36
6
11
45
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349