genome.fa.s1.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  190  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61529859--61529948	27	3.2	27	79	7	92	31	21	25	22	1.98
61545336--61545520	51	3.6	51	78	4	212	32	23	18	25	1.97
61545288--61545522	101	2.3	101	91	0	380	32	24	17	26	1.96
61545236--61545522	50	5.7	50	75	4	218	31	24	17	26	1.97
61545869--61545915	19	2.3	20	82	10	60	48	14	0	36	1.44
61546136--61546194	30	2.0	30	82	0	73	27	27	5	40	1.77
61548459--61548518	30	2.0	30	90	0	93	38	8	25	28	1.84
61558425--61558491	28	2.4	28	76	2	71	29	26	14	28	1.96
61561250--61561288	15	2.6	15	88	8	53	51	10	17	20	1.74
61563345--61563392	25	1.9	25	86	0	69	33	25	16	25	1.96
61563429--61563495	20	3.3	20	91	0	107	32	11	22	32	1.90
61563540--61563691	24	6.5	23	90	4	225	30	21	21	26	1.98
61563540--61563691	47	3.2	47	88	4	227	30	21	21	26	1.98
61563545--61563691	71	2.1	71	94	0	258	29	22	21	26	1.99
61563904--61563967	31	2.1	31	90	0	101	35	15	23	25	1.94
61567570--61567601	16	2.0	16	93	0	55	34	18	0	46	1.49
61567804--61568164	150	2.4	151	84	1	492	32	22	17	27	1.96
61567812--61568138	50	6.5	49	74	5	217	32	22	17	27	1.96
61568987--61569157	93	1.8	93	92	0	288	21	21	29	28	1.98
61568991--61569162	46	3.7	46	77	13	190	21	20	28	29	1.98
61571127--61571185	30	2.0	30	86	0	82	25	27	8	38	1.84
61580947--61581059	31	3.7	31	83	9	128	25	26	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61581371--61581418	11	4.6	11	80	12	57	33	18	12	35	1.89
61581454--61581501	25	1.9	25	86	0	69	31	14	18	35	1.91
61586373--61586429	30	1.9	30	88	0	87	28	29	26	15	1.96
61589037--61589155	29	4.2	30	83	8	151	26	29	14	29	1.95
61591677--61591944	40	6.7	40	95	0	464	30	20	26	22	1.98
61600395--61600660	40	6.7	40	92	1	437	30	21	27	21	1.98
61600395--61600660	119	2.2	120	92	1	437	30	21	27	21	1.98
61720452--61720502	24	2.1	25	96	3	95	33	19	17	29	1.95
61734896--61734999	29	3.6	29	88	0	136	34	27	21	16	1.94
61738163--61738380	40	5.5	40	85	2	271	23	21	27	27	1.99
61746256--61746433	40	4.5	40	88	2	261	23	21	28	25	1.99
61763316--61763342	12	2.2	12	100	0	54	51	7	0	40	1.30
61763823--61764000	27	6.6	27	83	3	205	26	15	28	29	1.96
61763824--61763979	82	1.9	81	88	3	233	26	15	28	29	1.96
61763820--61764000	82	2.2	81	83	2	229	27	15	27	29	1.96
61770762--61770786	13	1.9	13	100	0	50	16	16	24	44	1.86
61772959--61773055	32	3.0	32	100	0	194	18	18	24	38	1.93
61773688--61773767	27	3.0	27	86	0	115	27	17	16	38	1.91
61774089--61774124	18	2.0	18	94	0	63	19	22	16	41	1.90
61782512--61782573	26	2.3	27	81	10	83	35	27	8	29	1.85
61782681--61782791	27	4.1	26	85	6	123	19	23	21	35	1.96
61790558--61790645	27	3.3	26	85	4	113	19	22	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61791771--61791840	27	2.6	27	88	0	113	25	11	18	44	1.83
61804730--61804879	43	3.5	42	76	9	126	29	25	18	26	1.98
61804730--61804879	42	3.5	44	72	9	121	29	25	18	26	1.98
61813023--61813382	47	7.6	47	93	2	585	28	30	8	33	1.86
61813073--61813151	25	3.3	25	66	16	76	31	29	5	34	1.79
61813023--61813382	96	3.8	96	94	2	620	28	30	8	33	1.86
61813023--61813382	143	2.5	141	93	2	621	28	30	8	33	1.86
61815553--61815578	12	2.2	12	100	0	52	50	7	0	42	1.31
61816025--61816122	27	3.5	28	90	2	135	26	13	28	31	1.94
61816053--61816135	27	3.0	27	87	5	96	30	12	25	32	1.92
61819489--61819657	43	4.0	42	75	9	135	33	24	14	27	1.95
61829980--61830005	13	2.0	13	100	0	52	30	15	7	46	1.74
61831557--61831745	40	4.7	40	82	5	193	34	25	14	25	1.94
61833917--61834206	27	10.7	27	87	1	323	38	22	9	30	1.86
61834133--61834258	27	4.7	27	76	9	87	37	23	8	30	1.85
61834249--61834487	27	8.9	27	80	5	252	36	17	20	25	1.94
61834249--61834487	81	3.0	79	82	7	293	36	17	20	25	1.94
61835010--61835076	6	10.8	6	73	17	57	17	19	14	47	1.82
61835010--61835085	31	2.5	31	86	4	109	18	17	15	48	1.81
61838940--61839084	40	3.6	40	85	4	193	25	24	26	23	2.00
61846961--61847105	40	3.6	40	85	4	193	25	24	26	23	2.00
61869147--61869231	38	2.3	38	84	9	106	25	35	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61869378--61869513	50	2.8	50	85	6	199	30	27	7	34	1.84
61869491--61869653	47	3.5	46	84	8	206	25	28	12	33	1.93
61876247--61876419	93	1.8	95	86	7	255	23	20	27	28	1.99
61883214--61883358	40	3.6	40	85	4	184	25	24	25	24	2.00
61885226--61885255	15	1.9	16	93	6	53	40	26	0	33	1.57
61885428--61885580	42	3.6	42	78	6	157	29	23	16	30	1.96
61895657--61895811	42	3.7	42	79	3	141	27	23	17	31	1.97
61898726--61898766	19	2.1	20	86	4	57	34	0	14	51	1.43
61900781--61900855	20	3.8	20	87	6	102	38	8	18	34	1.80
61900798--61900855	11	5.6	11	74	15	61	37	8	18	34	1.82
61900905--61901061	26	6.2	26	87	2	223	28	21	22	27	1.99
61904986--61905170	79	2.3	82	83	7	229	25	27	22	24	2.00
61904967--61905170	40	5.1	40	80	8	220	25	27	22	25	2.00
61912066--61912132	20	3.3	20	85	4	91	38	10	19	31	1.85
61912075--61912132	11	5.6	11	70	15	52	37	10	18	32	1.85
61912182--61912330	26	5.8	26	86	1	203	26	24	23	26	2.00
61912182--61912338	78	2.1	74	89	4	233	28	22	22	26	1.99
61913406--61913791	50	7.7	50	74	3	299	27	16	24	31	1.97
61913410--61913788	151	2.5	151	90	0	598	27	16	24	31	1.97
61917309--61917353	15	3.1	14	83	6	54	13	17	13	55	1.69
61920313--61920554	50	4.8	50	78	3	252	26	18	25	29	1.98
61920314--61920495	101	1.8	101	86	0	265	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61926208--61926346	48	2.9	48	83	1	172	32	16	20	30	1.95
61926310--61926386	38	2.0	38	87	0	109	28	18	24	28	1.98
61929632--61929673	15	2.8	15	88	0	66	16	16	14	52	1.75
61932527--61932841	38	8.0	38	74	18	261	30	14	23	30	1.95
61932475--61932834	85	4.4	84	68	25	290	30	15	23	30	1.95
61932475--61932841	116	3.0	120	85	7	487	30	14	23	31	1.95
61932766--61932841	37	2.0	38	89	2	118	30	15	26	27	1.96
61933990--61934100	58	1.9	57	83	1	141	28	17	28	25	1.97
61933977--61934091	29	4.0	29	82	6	128	28	15	28	26	1.96
61937099--61937136	20	1.9	20	100	0	76	15	23	13	47	1.81
61941149--61941189	20	2.0	20	95	0	73	36	21	4	36	1.75
61948942--61948998	23	2.5	23	100	0	114	57	10	15	15	1.64
61952485--61952539	23	2.5	23	88	5	87	34	29	3	32	1.75
61959397--61959538	44	3.3	43	81	7	155	31	23	17	26	1.97
61965968--61966230	40	6.6	40	88	3	325	26	27	20	24	1.99
61970874--61970899	7	3.7	7	100	0	52	30	0	53	15	1.42
61976712--61976894	50	3.6	50	81	4	190	26	19	24	29	1.98
61976712--61976845	51	2.6	52	85	4	175	26	20	23	29	1.99
61979352--61979415	28	2.3	28	91	0	101	18	17	37	26	1.93
61979732--61980070	27	12.6	27	83	1	333	39	20	9	31	1.84
61979753--61980099	54	6.4	54	85	3	405	39	19	9	32	1.83
61979782--61980166	27	14.3	27	79	5	198	38	19	10	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61979732--61980166	27	16.1	27	79	7	171	38	19	11	30	1.87
61980023--61980171	55	2.7	55	76	7	151	36	19	14	28	1.92
61984818--61984874	28	2.0	28	96	0	105	49	14	21	15	1.80
61988938--61989198	40	6.7	40	87	8	319	24	27	22	25	2.00
61988938--61989198	78	3.3	79	85	9	313	24	27	22	25	2.00
61991178--61991437	38	6.6	39	87	8	311	24	27	22	25	2.00
61991180--61991437	77	3.3	77	86	10	314	24	27	22	25	2.00
62001561--62001822	39	6.7	40	87	7	328	24	27	22	25	2.00
62004434--62004526	19	5.1	19	73	12	77	31	8	12	47	1.72
62004404--62004536	54	2.5	54	91	0	203	35	7	13	43	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349