genome.fa.s1.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  135  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43357871--43357900	13	2.3	13	94	0	51	43	0	10	46	1.37
43361506--43361594	28	3.1	28	78	12	83	26	26	15	30	1.96
43365899--43366027	29	4.5	29	86	2	172	28	29	12	29	1.93
43365899--43366027	58	2.2	59	89	4	192	28	29	12	29	1.93
43365899--43366043	58	2.5	58	85	3	186	28	30	11	28	1.92
43367479--43367517	16	2.4	16	86	4	51	12	2	33	51	1.54
43373748--43373931	40	4.6	40	82	4	183	26	27	21	25	1.99
43373863--43373940	40	1.9	41	82	10	97	26	28	21	23	1.99
43381526--43381709	40	4.6	40	83	5	185	26	27	21	25	1.99
43381641--43381718	40	1.9	41	82	10	97	26	28	21	23	1.99
43387155--43387429	50	5.5	49	87	3	345	30	28	16	25	1.97
43387349--43387430	26	3.3	26	61	22	66	30	28	14	26	1.95
43390205--43390231	13	2.1	13	100	0	54	7	40	29	22	1.81
43393800--43393857	25	2.4	25	85	2	73	24	18	22	34	1.96
43393904--43393942	10	3.8	10	93	6	69	30	17	17	33	1.94
43393985--43394033	25	2.0	25	91	0	80	28	12	24	34	1.91
43400141--43400167	13	2.1	13	100	0	54	25	14	29	29	1.95
43407196--43407239	22	2.0	22	95	0	79	43	18	9	29	1.80
43410887--43410954	31	2.3	29	80	12	75	22	4	1	72	1.11
43410919--43410983	29	2.3	26	80	17	60	21	4	3	70	1.19
43410944--43410992	21	2.3	21	82	6	55	22	4	2	71	1.13
43414938--43415019	41	2.0	41	86	6	114	26	13	30	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43430336--43430366	16	1.9	16	100	0	62	38	3	25	32	1.72
43432197--43432407	40	5.3	40	82	5	259	27	28	20	23	1.99
43432197--43432405	80	2.6	79	90	1	330	26	28	21	23	1.99
43440258--43440468	40	5.3	39	83	6	264	27	28	20	23	1.99
43440258--43440468	79	2.7	80	91	2	345	27	28	20	23	1.99
43462384--43462692	47	6.6	47	91	2	476	29	29	8	32	1.87
43462384--43462692	96	3.3	96	90	4	497	29	29	8	32	1.87
43462384--43462692	143	2.2	140	90	1	438	29	29	8	32	1.87
43465971--43466019	25	2.0	25	84	11	66	30	30	8	30	1.86
43466183--43466543	40	9.1	40	93	0	562	25	28	21	24	1.99
43466596--43466670	38	2.0	38	86	5	107	24	26	18	30	1.98
43469103--43469412	47	6.6	47	91	1	485	29	29	8	32	1.87
43469103--43469412	96	3.3	96	91	3	506	29	29	8	32	1.87
43469103--43469412	143	2.2	141	91	1	449	29	29	8	32	1.87
43476750--43476916	46	3.8	43	76	13	162	22	20	26	30	1.98
43476748--43476909	86	1.9	86	87	5	238	22	20	27	29	1.98
43477141--43477178	19	2.0	20	85	15	53	36	0	23	39	1.55
43482584--43482790	49	4.2	49	85	1	261	26	17	27	28	1.98
43482584--43482803	98	2.2	101	84	2	293	26	18	26	28	1.98
43488559--43488680	43	2.9	42	80	11	140	22	17	26	33	1.96
43490333--43490363	15	2.1	15	93	0	53	29	0	16	54	1.42
43490942--43491111	43	4.0	42	83	4	216	24	16	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43490957--43491111	84	1.8	84	88	0	238	24	16	29	30	1.96
43493421--43493781	180	2.0	178	88	2	526	33	22	7	36	1.82
43494338--43494679	151	2.3	151	83	1	429	29	25	18	26	1.98
43494335--43494719	50	7.7	51	73	5	239	30	25	17	26	1.97
43495111--43495279	40	4.2	40	93	3	277	28	28	20	23	1.99
43495105--43495279	80	2.2	80	94	0	305	29	28	20	22	1.98
43496956--43496998	16	2.7	16	79	13	52	48	23	20	6	1.73
43497209--43497323	29	4.0	28	85	2	131	28	14	27	28	1.95
43497222--43497332	58	1.9	57	87	1	159	27	15	28	27	1.96
43503016--43503186	93	1.8	93	94	0	306	28	28	21	21	1.98
43503011--43503183	46	3.7	46	77	13	201	29	27	20	21	1.98
43513245--43513700	47	9.6	48	93	3	714	32	8	29	29	1.87
43513245--43513700	96	4.8	96	92	3	744	32	8	29	29	1.87
43515754--43515856	43	2.4	43	96	0	197	22	14	35	27	1.93
43515838--43515911	29	2.6	29	89	4	105	25	16	32	25	1.96
43516300--43516496	40	4.9	40	94	0	322	26	22	25	24	2.00
43516259--43516491	80	2.9	80	88	2	290	27	22	25	24	2.00
43520106--43520558	47	9.6	47	89	5	680	32	8	28	30	1.87
43520115--43520547	143	3.0	142	88	7	658	32	8	28	30	1.87
43520106--43520558	96	4.8	96	90	4	699	32	8	28	30	1.87
43523376--43523620	39	6.2	40	83	7	313	22	21	28	26	1.99
43523378--43523605	80	2.9	80	84	10	308	22	21	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43523377--43523596	120	1.8	120	90	2	354	23	21	29	25	1.99
43531352--43531616	40	6.6	40	87	3	372	23	22	27	26	2.00
43531357--43531616	83	3.2	83	89	5	376	23	23	28	25	2.00
43531352--43531616	123	2.2	120	89	2	397	23	22	27	26	2.00
43535827--43536005	28	6.4	28	92	1	279	34	26	11	26	1.91
43540898--43540927	15	2.0	15	100	0	60	13	0	33	53	1.40
43551208--43551565	47	7.6	47	94	1	590	28	29	8	33	1.86
43551258--43551336	25	3.3	25	66	16	76	31	29	5	34	1.79
43551208--43551565	190	1.9	188	94	1	635	28	29	8	33	1.86
43554614--43554654	20	2.0	20	86	9	57	26	2	2	68	1.15
43561693--43561744	26	2.0	26	88	3	77	28	13	21	36	1.91
43574292--43574351	30	2.0	30	86	0	84	40	6	25	28	1.80
43579487--43579595	43	2.5	42	80	5	112	27	18	21	33	1.96
43581402--43582615	308	3.9	308	86	1	1662	37	18	20	23	1.94
43583790--43583872	8	9.8	8	72	12	67	24	6	0	69	1.10
43584029--43584095	17	4.1	17	75	24	63	14	5	2	76	1.10
43584029--43584081	14	3.5	15	80	10	54	16	5	1	75	1.08
43584048--43584091	20	2.2	20	80	4	54	13	6	4	75	1.17
43586653--43586894	39	6.2	39	87	0	331	24	23	29	21	1.99
43586653--43586894	117	2.1	117	90	0	376	24	23	29	21	1.99
43592629--43592859	39	5.9	39	89	0	336	23	22	29	23	1.99
43592629--43592859	117	2.0	117	92	0	381	23	22	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43597401--43597571	40	4.2	40	77	10	138	30	14	24	30	1.95
43597504--43597590	40	2.2	41	89	4	133	32	16	20	31	1.94
43599621--43599766	27	5.4	27	84	0	184	24	19	19	36	1.94
43599621--43599766	54	2.7	55	87	3	215	24	19	19	36	1.94
43604956--43605015	27	2.3	26	85	2	75	35	20	23	21	1.96
43604977--43605040	33	2.0	32	84	3	83	34	20	25	20	1.96
43605056--43605107	27	2.0	26	84	3	68	34	17	26	21	1.95
43605761--43605877	27	4.3	27	90	0	171	23	22	18	35	1.96
43612017--43612052	6	5.7	6	87	12	54	2	13	0	83	0.76
43612017--43612053	7	5.6	7	90	3	51	2	13	0	83	0.74
43612017--43612053	13	2.8	13	92	8	58	2	13	0	83	0.74
43612815--43612883	34	2.0	34	83	5	86	30	26	20	23	1.98
43615632--43615656	13	1.9	13	100	0	50	32	4	24	40	1.73
43616671--43616832	43	3.8	43	74	9	134	27	16	25	31	1.96
43620871--43620895	11	2.3	11	100	0	50	44	16	28	12	1.83
43628725--43628788	27	2.3	27	78	10	67	1	37	0	60	1.06
43629208--43629272	14	4.4	15	78	14	64	20	4	0	75	0.98
43629203--43629250	16	2.9	16	84	9	53	16	8	0	75	1.04
43629208--43629274	5	13.6	5	73	9	57	19	4	0	76	0.96
43632438--43632469	9	3.8	9	84	16	50	31	0	0	68	0.90
43640690--43640763	6	12.3	6	82	0	85	14	6	2	75	1.12
43640690--43640776	12	7.2	12	78	8	79	14	6	3	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43646980--43647018	18	2.2	18	100	0	78	25	23	15	35	1.94
43652308--43652485	27	6.6	27	84	3	214	26	14	28	30	1.95
43652309--43652464	82	1.9	81	88	3	233	26	14	28	30	1.95
43652308--43652485	82	2.2	81	84	3	232	26	14	28	30	1.95
43660547--43660724	27	6.6	27	85	3	214	26	14	28	30	1.95
43660548--43660703	82	1.9	81	89	3	242	26	14	28	30	1.95
43660544--43660724	82	2.2	81	84	2	238	27	14	27	30	1.95
43664750--43664925	27	6.6	27	83	6	196	30	28	14	26	1.95
43672336--43672513	27	6.6	27	83	3	205	26	15	28	29	1.96
43672337--43672492	82	1.9	81	88	3	233	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349