genome.fa.s1.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  154  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49663186--49663363	27	6.6	27	83	3	205	26	15	28	29	1.96
49663187--49663342	82	1.9	81	88	3	233	26	15	28	29	1.96
49663183--49663363	82	2.2	81	83	2	229	27	15	27	29	1.96
49680126--49680399	145	1.9	145	94	0	485	31	23	14	30	1.94
49680382--49680449	29	2.3	29	82	5	84	27	29	13	29	1.94
49680239--49680598	174	2.1	174	98	0	693	31	25	13	29	1.94
49680558--49680629	29	2.5	30	82	13	96	30	29	12	27	1.93
49686652--49686921	40	6.8	40	93	2	402	27	28	21	22	1.99
49690533--49690599	31	2.2	30	89	2	98	25	34	26	13	1.93
49694131--49694158	12	2.3	12	100	0	56	21	7	14	57	1.61
49707646--49707898	127	2.0	126	89	2	391	34	22	23	19	1.97
49727755--49728133	47	8.1	47	92	0	553	34	10	28	26	1.89
49727831--49727949	22	5.1	22	62	28	59	32	13	29	24	1.93
49728107--49728289	46	4.0	46	92	0	285	34	9	31	24	1.87
49729772--49729848	40	1.9	40	97	0	145	25	22	25	25	2.00
49729782--49729911	63	2.1	63	95	2	235	25	21	26	26	1.99
49729822--49729871	23	2.2	23	92	7	84	26	22	26	26	2.00
49729845--49729929	40	2.1	40	100	0	170	25	20	27	27	1.99
49729852--49729944	40	2.3	40	90	5	145	25	22	25	25	2.00
49733732--49733909	27	6.6	27	84	3	205	29	28	15	26	1.96
49733753--49733908	82	1.9	81	88	3	233	29	28	15	26	1.96
49737133--49737557	47	9.1	47	92	1	629	34	10	28	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49737162--49737516	187	1.9	187	94	1	631	34	12	28	25	1.92
49737531--49737713	46	4.0	46	90	0	267	34	8	30	25	1.86
49737154--49737603	187	2.4	184	85	5	564	34	11	28	25	1.90
49747462--49747516	22	2.5	22	84	0	83	32	23	29	14	1.94
49747500--49747753	127	2.0	127	89	1	384	35	22	22	20	1.96
49751935--49751975	21	1.9	22	85	5	57	41	0	9	48	1.36
49752689--49752726	20	2.1	19	85	14	53	44	0	10	44	1.38
49756088--49756272	40	4.6	41	80	7	204	24	22	27	24	2.00
49761814--49761849	16	2.2	17	95	5	65	16	19	22	41	1.90
49763381--49763421	21	1.9	22	85	5	57	41	0	9	48	1.36
49766436--49766538	43	2.4	43	86	4	145	33	15	21	29	1.94
49769432--49769534	51	2.0	51	92	0	170	20	32	23	24	1.98
49774154--49774342	43	4.4	43	87	2	254	33	16	20	29	1.95
49776151--49776229	37	2.1	37	90	0	122	25	31	18	24	1.98
49776348--49776897	47	11.6	47	95	2	965	29	29	8	32	1.87
49776348--49776897	96	5.8	94	95	2	965	29	29	8	32	1.87
49776348--49776897	143	3.9	143	97	0	1014	29	29	8	32	1.87
49777124--49777222	40	2.5	40	86	3	128	26	28	22	23	1.99
49781074--49781189	39	3.0	40	86	5	166	25	27	22	24	2.00
49781074--49781192	40	3.1	39	82	11	147	26	26	21	25	2.00
49781459--49781713	40	6.5	40	90	4	394	23	21	29	25	1.99
49781513--49781579	23	3.2	23	64	24	65	22	22	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49785558--49785660	40	2.6	41	85	3	138	22	22	30	25	1.99
49785903--49785977	22	3.3	22	63	7	60	29	10	30	29	1.91
49785886--49786429	95	5.8	94	93	4	893	32	8	29	29	1.87
49785886--49786429	47	11.6	47	93	4	902	32	8	29	29	1.87
49789390--49789567	27	6.6	27	84	3	205	29	28	15	26	1.96
49789411--49789566	82	1.9	81	88	3	233	29	28	15	26	1.96
49797438--49797615	27	6.6	27	84	3	205	29	28	15	26	1.96
49797459--49797614	82	1.9	81	88	3	233	29	28	15	26	1.96
49806883--49806909	13	2.1	13	100	0	54	14	37	33	14	1.88
49807748--49807783	17	2.1	18	94	5	65	30	5	11	52	1.59
49814945--49815002	28	2.1	28	93	0	98	46	0	22	31	1.52
49824261--49824300	20	2.0	20	100	0	80	10	35	40	15	1.80
49825693--49825747	27	2.0	27	89	0	83	32	20	18	29	1.96
49834759--49834842	40	2.1	39	84	2	105	28	26	17	27	1.98
49838417--49838454	19	2.0	20	85	15	53	39	23	0	36	1.55
49838785--49838961	85	2.1	85	98	0	345	38	8	25	26	1.84
49840128--49840312	40	4.7	40	78	10	184	24	21	28	25	1.99
49840183--49840345	79	2.1	79	80	6	179	26	19	28	25	1.98
49845077--49845256	28	6.5	28	92	2	276	27	13	28	30	1.94
49845077--49845256	55	3.3	54	91	3	270	27	13	28	30	1.94
49845077--49845256	83	2.2	82	91	1	288	27	13	28	30	1.94
49850188--49850366	85	2.1	85	100	0	358	37	8	27	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49851531--49851713	79	2.3	81	83	7	223	24	22	27	24	2.00
49851532--49851715	40	4.6	40	82	9	207	24	22	28	24	2.00
49851584--49851748	79	2.1	79	83	6	201	26	21	27	24	1.99
49860385--49860500	24	4.4	27	83	15	163	35	14	24	25	1.94
49860385--49860500	52	2.2	52	96	0	214	35	14	24	25	1.94
49860524--49860666	51	2.8	51	93	4	245	31	11	25	31	1.91
49865077--49865179	43	2.4	43	79	11	104	37	26	12	23	1.90
49870018--49870165	51	2.9	51	93	6	255	27	26	14	31	1.95
49870201--49870248	24	2.0	24	91	0	78	27	20	16	35	1.94
49876887--49877034	51	2.9	51	93	0	242	27	24	13	34	1.93
49879504--49879553	24	2.1	24	100	0	100	14	24	4	58	1.53
49881436--49881659	40	5.7	40	85	6	262	25	28	22	24	1.99
49881436--49881606	78	2.2	80	89	4	258	25	28	22	23	1.99
49881436--49881659	79	2.8	78	83	6	263	25	28	22	24	1.99
49884926--49885137	49	4.3	50	78	2	185	25	18	26	29	1.98
49884925--49885101	51	3.5	50	78	2	158	25	18	25	29	1.98
49885361--49885398	16	2.4	16	100	0	76	50	0	21	28	1.49
49886227--49886449	112	2.0	112	100	0	446	29	14	15	41	1.86
49887433--49887691	20	12.9	20	85	3	306	13	19	27	39	1.89
49887723--49887793	26	2.7	26	86	0	97	18	21	23	36	1.95
49890670--49890746	40	1.9	40	82	10	95	35	9	12	42	1.75
49890688--49890746	20	3.0	20	74	0	55	33	10	11	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49894495--49894520	13	2.0	13	100	0	52	46	15	0	38	1.46
49901117--49901292	46	3.8	46	79	12	216	20	21	29	28	1.98
49901113--49901285	93	1.9	93	96	0	319	20	21	30	27	1.98
49902800--49902982	39	4.7	40	80	9	198	24	28	22	25	1.99
49902800--49902987	78	2.4	80	83	7	224	24	28	21	25	1.99
49915359--49915476	40	3.0	40	88	2	175	29	22	21	27	1.99
49915359--49915476	39	3.0	39	89	2	173	29	22	21	27	1.99
49915549--49915586	20	1.9	20	88	0	58	31	21	18	28	1.97
49915690--49915730	21	2.0	21	85	9	57	41	2	4	51	1.36
49916325--49916387	18	3.5	18	72	14	67	23	0	6	69	1.11
49916329--49916394	18	3.8	16	73	15	60	19	0	7	72	1.08
49916327--49916406	35	2.3	35	91	2	124	17	0	7	75	1.03
49916474--49916531	22	2.7	21	81	5	71	62	0	3	34	1.12
49920892--49921067	42	4.2	41	77	11	144	25	9	28	36	1.86
49920965--49921075	41	2.7	43	84	6	140	26	9	27	36	1.86
49921520--49921559	14	2.9	14	78	14	55	35	2	0	62	1.09
49922075--49922106	11	2.8	11	95	4	55	31	15	18	34	1.93
49928523--49928561	15	2.6	15	91	0	69	17	20	0	61	1.34
49932438--49932535	27	3.5	28	90	2	135	26	13	28	31	1.94
49932466--49932548	27	3.0	27	87	5	96	30	12	25	32	1.92
49932438--49932549	28	4.0	27	83	6	98	28	12	25	33	1.92
49940745--49940842	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49940773--49940855	27	3.0	27	87	5	96	30	12	25	32	1.92
49940745--49940856	28	4.0	27	83	6	98	28	12	25	33	1.92
49952457--49952629	46	3.8	45	77	11	181	22	19	27	30	1.98
49952454--49952624	93	1.8	93	89	2	272	22	19	28	29	1.98
49952854--49952891	19	2.0	20	85	15	53	36	0	23	39	1.55
49956265--49956436	40	4.3	40	86	2	195	26	27	21	24	1.99
49958280--49958537	40	6.5	40	87	4	335	24	27	24	23	2.00
49966406--49966576	93	1.8	93	87	2	254	23	21	26	29	1.99
49969016--49969346	43	7.7	43	86	0	455	25	17	28	28	1.97
49981695--49981725	13	2.3	14	94	5	55	22	12	19	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349