genome.fa.s1.2.7.7.80.10.50.1000.325.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  325  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108080359--108080397	3	13.0	3	84	10	53	64	0	5	30	1.15
108083010--108083280	134	2.0	134	100	0	542	31	13	16	38	1.88
108085315--108085388	3	25.7	3	72	20	52	27	1	4	67	1.16
108085321--108085402	28	3.1	26	74	22	82	25	2	2	69	1.13
108087083--108087119	5	7.2	5	93	6	65	18	0	0	81	0.70
108087083--108087132	15	3.2	16	88	8	68	20	2	0	78	0.86
108092607--108092645	12	3.2	12	96	0	69	48	2	7	41	1.45
108094295--108094341	20	2.3	20	100	0	94	19	31	29	19	1.96
108097970--108098014	19	2.3	20	92	3	74	55	0	6	37	1.26
108101152--108101277	55	2.3	55	92	0	216	30	8	28	31	1.87
108108183--108108362	41	4.4	40	77	9	168	31	27	15	25	1.96
108109815--108110184	152	2.4	152	81	1	420	35	21	18	24	1.95
108109815--108110181	76	4.8	76	79	2	360	35	21	18	23	1.95
108111569--108111603	17	2.0	18	88	5	54	74	8	0	17	1.06
108111943--108111985	22	1.9	22	85	4	59	69	11	9	9	1.36
108124298--108124607	159	1.9	161	82	4	385	32	19	10	37	1.85
108125028--108125182	80	1.9	80	97	0	292	32	21	9	36	1.86
108125382--108125429	20	2.4	20	86	6	62	60	0	2	37	1.09
108125468--108125514	21	2.2	21	84	0	58	27	12	21	38	1.90
108125670--108125721	20	2.7	19	82	5	59	57	1	3	36	1.28
108125765--108125830	34	1.9	34	96	0	123	46	1	3	48	1.26
108125812--108125862	23	2.2	23	82	6	59	41	5	1	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108125765--108125850	34	2.5	34	86	3	120	44	3	2	50	1.32
108134501--108134528	2	14.0	2	100	0	56	50	0	0	50	1.00
108136648--108136743	25	3.8	25	81	0	102	17	27	22	32	1.97
108138268--108138364	49	2.0	49	97	0	185	31	14	12	41	1.83
108139050--108139102	20	2.7	19	85	8	70	33	5	9	50	1.58
108144440--108144519	24	3.2	24	74	10	88	32	1	5	61	1.26
108144445--108144519	18	4.4	17	75	13	73	32	1	5	61	1.27
108144463--108144564	25	4.1	24	72	17	75	29	1	4	63	1.26
108144440--108144545	51	2.1	51	92	5	178	32	1	4	61	1.27
108148688--108148791	45	2.3	45	85	3	138	42	19	16	22	1.89
108149777--108149838	6	10.2	6	82	1	70	0	20	3	75	0.94
108150082--108150144	33	1.9	32	84	15	85	55	6	0	38	1.25
108152966--108153099	34	3.9	33	78	11	119	42	14	0	42	1.46
108152956--108153119	34	4.7	34	73	6	116	43	14	0	41	1.50
108157358--108157407	24	2.1	24	96	0	91	16	22	2	60	1.46
108160412--108160604	43	4.5	43	81	3	219	26	14	24	33	1.94
108162026--108162071	18	2.5	19	78	3	58	39	4	19	36	1.72
108164692--108164806	49	2.3	50	80	5	135	33	19	25	21	1.97
108164749--108164837	25	3.6	24	75	10	65	37	17	29	15	1.91
108166605--108166714	18	6.1	18	84	6	134	36	15	15	32	1.89
108166830--108166948	51	2.3	51	83	4	148	41	21	21	16	1.91
108168841--108169101	131	2.0	130	96	3	483	42	13	1	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108172644--108172795	76	2.0	76	98	0	295	38	11	9	40	1.73
108176098--108176175	41	1.9	41	89	0	120	30	19	25	24	1.98
108176504--108176546	21	2.0	20	82	13	50	25	2	27	44	1.66
108176581--108176624	21	2.1	21	84	16	56	18	0	45	36	1.49
108176551--108176612	32	1.9	32	83	0	79	19	0	37	43	1.51
108179180--108179650	235	2.0	235	100	0	942	28	14	12	44	1.82
108182135--108182182	21	2.3	21	96	0	87	25	18	56	0	1.42
108182479--108182619	43	3.3	43	90	0	210	21	19	26	31	1.98
108189366--108189471	26	4.1	26	93	0	185	33	7	23	35	1.83
108191318--108191382	32	2.0	34	84	6	89	26	16	24	32	1.96
108192170--108192210	16	2.5	17	80	15	50	56	7	4	31	1.48
108196428--108196507	26	3.1	26	92	0	142	33	7	23	35	1.83
108213769--108213885	61	1.9	62	87	5	175	23	12	13	50	1.76
108222455--108222488	17	2.0	17	88	0	50	32	2	14	50	1.58
108234700--108234728	11	2.5	12	94	5	51	17	24	0	58	1.38
108235126--108235167	13	3.0	14	86	10	59	80	4	2	11	0.95
108235124--108235166	14	3.3	13	87	9	61	83	4	2	9	0.87
108243940--108243982	21	2.0	21	100	0	86	39	27	13	18	1.89
108251596--108251630	17	2.1	17	94	0	61	20	14	11	54	1.70
108255100--108255259	52	3.1	52	80	9	182	28	15	25	30	1.95
108255165--108255303	46	2.8	52	77	15	150	23	15	30	30	1.96
108256050--108256107	20	2.9	20	86	0	89	20	31	31	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108258745--108258789	20	2.2	20	96	0	81	40	6	8	44	1.62
108264060--108264111	20	2.3	24	81	18	76	38	3	3	53	1.37
108264397--108264433	19	2.0	18	89	5	56	35	2	0	62	1.10
108276158--108276961	210	3.8	210	88	2	1090	30	18	21	29	1.97
108278886--108278929	20	2.4	18	80	20	56	36	4	4	54	1.41
108278891--108278930	20	2.1	19	95	4	71	37	5	5	52	1.45
108279214--108279253	19	2.2	18	86	4	53	32	2	0	65	1.06
108312599--108312634	3	12.0	3	100	0	72	0	33	0	66	0.92
108325701--108325770	27	2.6	27	97	0	113	24	24	25	25	2.00
108329473--108329533	30	2.1	29	96	3	113	24	16	22	36	1.94
108331150--108331199	25	2.0	25	96	0	91	28	14	24	34	1.93
108331231--108331256	11	2.4	11	100	0	52	53	26	0	19	1.45
108340608--108340671	31	2.1	31	88	8	96	56	10	4	28	1.54
108341003--108341046	21	2.1	21	91	0	70	13	9	13	63	1.51
108343408--108343447	14	2.7	15	84	11	55	25	0	2	72	0.97
108343598--108343631	17	1.9	18	88	5	52	20	5	11	61	1.50
108344434--108344516	33	2.6	32	77	7	78	21	7	9	61	1.51
108344817--108345074	131	2.0	130	84	2	338	27	20	17	34	1.95
108356469--108356535	30	2.3	30	79	7	75	34	4	7	53	1.49
108367216--108367268	27	2.0	27	96	0	97	16	24	24	33	1.96
108371692--108371849	27	5.9	27	84	11	191	34	21	24	19	1.96
108371710--108371849	54	2.6	54	95	2	246	35	22	23	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108373472--108373579	26	4.2	26	91	0	180	36	23	8	32	1.84
108374568--108374636	24	2.7	26	80	4	79	31	17	24	26	1.97
108376318--108376352	13	2.8	13	91	4	54	54	17	0	28	1.43
108376963--108377019	26	2.2	26	83	0	69	29	36	14	19	1.91
108384006--108384040	18	1.9	18	100	0	70	40	42	0	17	1.49
108385583--108385643	23	2.7	23	97	2	115	52	9	0	37	1.35
108385660--108385778	57	2.1	57	87	3	168	28	18	5	47	1.72
108391038--108391085	14	3.6	12	79	20	51	64	0	0	35	0.94
108391029--108391132	41	2.4	45	75	19	114	58	0	2	37	1.19
108392936--108392988	17	3.0	18	76	21	58	58	0	1	39	1.09
108399305--108399331	2	13.5	2	100	0	54	51	0	0	48	1.00
108399567--108399609	21	2.0	22	81	4	52	37	0	2	60	1.10
108406821--108406919	43	2.3	43	91	0	162	27	30	18	24	1.98
108411976--108412239	46	5.7	46	92	2	406	21	23	14	39	1.91
108416061--108416110	26	1.9	26	87	0	73	42	4	4	50	1.40
108416080--108416110	16	1.9	16	93	0	53	38	3	0	58	1.15
108416258--108416333	15	5.1	14	78	12	71	38	42	1	18	1.59
108416840--108416887	24	2.1	23	88	7	71	18	0	35	45	1.50
108416941--108417112	41	4.2	40	80	5	155	20	20	20	37	1.94
108418457--108418815	177	2.0	178	89	3	546	31	14	17	36	1.90
108419819--108419867	23	2.1	23	84	0	62	20	6	12	61	1.52
108427875--108427942	30	2.3	30	89	5	102	30	17	5	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108427885--108427947	30	2.1	30	100	0	126	25	17	6	50	1.69
108428633--108428677	21	2.2	20	88	7	65	6	17	0	75	1.01
108428632--108428687	26	2.2	26	80	6	60	10	17	1	69	1.26
108430392--108430572	90	2.0	90	97	0	344	31	18	4	45	1.71
108433465--108433525	29	2.1	29	81	6	70	54	9	8	27	1.62
108436478--108436519	20	2.1	21	86	8	61	64	0	0	35	0.94
108443854--108444133	141	2.0	139	95	1	506	32	19	12	35	1.89
108450646--108450703	19	3.1	19	97	0	107	37	17	15	29	1.90
108458440--108458502	33	1.9	33	100	0	126	44	4	9	41	1.58
108464232--108464267	18	2.0	18	100	0	72	33	5	11	50	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349