genome.fa.s1.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  196  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63404031--63404064	12	2.7	13	86	9	52	11	26	0	61	1.30
63406388--63406447	22	2.7	23	73	19	63	66	6	0	26	1.16
63406397--63406430	4	8.0	4	90	9	50	73	2	0	23	0.97
63411576--63411753	27	6.6	27	85	3	214	26	14	28	30	1.95
63411577--63411732	82	1.9	81	89	3	242	26	14	28	30	1.95
63411573--63411753	82	2.2	81	84	2	238	27	14	27	30	1.95
63415836--63415974	60	2.3	60	82	6	156	26	18	27	27	1.98
63418488--63418558	19	3.4	19	68	20	61	28	14	16	40	1.87
63418471--63418561	44	2.1	44	97	0	173	26	12	18	42	1.85
63423310--63423494	26	7.0	26	84	2	181	43	15	12	28	1.83
63423342--63423520	27	6.8	26	85	3	189	40	13	14	31	1.85
63423321--63423510	27	7.2	26	85	3	184	41	14	13	30	1.84
63424981--63425012	8	4.2	8	84	15	50	34	0	0	65	0.93
63440472--63440614	44	3.0	46	79	13	148	25	29	17	27	1.97
63441223--63441289	31	2.2	31	91	0	107	32	10	13	43	1.78
63447264--63447292	13	2.2	13	100	0	58	27	0	10	62	1.28
63459921--63460002	34	2.4	34	85	2	103	29	25	23	21	1.99
63461526--63461779	55	4.8	54	81	8	265	35	16	24	22	1.95
63461533--63461732	108	1.8	109	88	5	307	34	17	25	24	1.96
63461847--63461891	23	1.9	24	90	4	74	42	11	24	22	1.86
63469055--63469254	108	1.8	109	88	5	307	34	17	25	23	1.96
63469369--63469413	23	1.9	24	90	4	74	42	11	24	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63469492--63469522	16	1.9	16	93	0	53	41	0	22	35	1.54
63475825--63476662	47	17.6	47	94	2	1399	32	8	29	29	1.87
63475825--63476662	96	8.8	94	94	1	1372	32	8	29	29	1.87
63478086--63478594	40	12.8	40	92	1	808	23	21	28	25	1.99
63478770--63478821	25	2.1	25	85	7	70	28	7	32	30	1.85
63482424--63483021	47	12.6	47	91	3	964	33	8	29	28	1.86
63482635--63482709	22	3.3	22	68	14	62	32	12	29	26	1.92
63492765--63492937	93	1.9	93	88	0	265	28	30	21	19	1.98
63492757--63492933	46	3.8	46	75	10	171	29	29	20	19	1.97
63495837--63496008	93	1.8	93	94	0	308	27	29	22	21	1.99
63495829--63496004	46	3.8	46	77	12	207	28	28	21	21	1.99
63500165--63500204	19	2.1	19	85	0	53	25	35	17	22	1.95
63501446--63501493	14	3.4	14	85	0	60	18	31	6	43	1.75
63510347--63510375	13	2.2	13	100	0	58	62	10	0	27	1.28
63510600--63510647	10	4.7	10	80	14	53	41	22	20	14	1.89
63510600--63510647	21	2.3	21	89	3	71	41	22	20	14	1.89
63659235--63659282	14	3.4	14	80	11	53	18	29	8	43	1.79
63662320--63662373	20	2.7	20	82	0	63	24	20	18	37	1.94
63662320--63662393	30	2.5	30	86	8	98	21	20	18	39	1.93
63662320--63662384	20	3.2	20	71	16	53	23	21	16	38	1.93
63663983--63664039	11	4.7	12	74	18	55	70	3	8	17	1.28
63665097--63665214	12	9.8	12	68	18	50	70	3	18	7	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63665114--63665217	18	5.6	18	75	5	82	71	3	18	6	1.24
63665110--63665217	6	17.7	6	70	6	74	71	3	18	6	1.23
63665178--63665215	13	2.8	13	82	17	51	73	0	18	7	1.06
63665179--63665229	21	2.4	21	74	6	50	74	1	17	5	1.11
63665232--63665294	33	1.9	33	84	12	85	53	6	26	12	1.62
63667071--63667124	20	2.7	20	82	0	63	24	20	18	37	1.94
63667071--63667144	30	2.5	30	86	8	98	21	20	18	39	1.93
63667071--63667135	20	3.2	20	71	16	53	23	21	16	38	1.93
63668727--63668793	11	5.7	11	74	17	55	71	4	7	16	1.25
63668727--63668806	38	2.2	37	84	8	101	71	6	8	13	1.30
63669821--63669938	12	9.8	12	68	18	50	70	3	18	7	1.26
63669838--63669941	18	5.6	18	75	5	82	71	3	18	6	1.24
63669834--63669941	6	17.7	6	70	6	74	71	3	18	6	1.23
63669902--63669939	13	2.8	13	82	17	51	73	0	18	7	1.06
63669903--63669953	21	2.4	21	74	6	50	74	1	17	5	1.11
63669956--63670018	33	1.9	33	84	12	85	53	6	26	12	1.62
63671793--63671846	20	2.7	20	82	0	63	24	20	18	37	1.94
63671793--63671866	30	2.5	30	86	8	98	21	20	18	39	1.93
63671793--63671857	20	3.2	20	71	16	53	23	21	16	38	1.93
63679249--63679277	13	2.2	13	100	0	58	62	10	0	27	1.28
63679503--63679550	21	2.3	21	89	3	71	41	20	20	16	1.90
63686976--63687049	29	2.6	28	78	4	85	27	31	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63687260--63687302	16	2.7	16	85	0	50	11	18	18	51	1.76
63688419--63688450	16	2.0	16	93	0	55	15	6	28	50	1.68
63693940--63694033	42	2.2	43	79	9	102	25	24	20	29	1.99
63694469--63694508	20	2.0	20	100	0	80	45	0	15	40	1.46
63704484--63704561	38	2.1	38	100	0	156	26	17	17	37	1.93
63707873--63707926	20	2.7	20	82	0	63	24	20	18	37	1.94
63710248--63710362	43	2.7	42	79	9	119	23	22	25	28	1.99
63713403--63713553	28	5.6	27	86	7	182	25	14	29	31	1.95
63715154--63715373	39	5.6	39	85	4	246	26	28	20	25	1.99
63723016--63723183	40	4.2	40	89	0	221	26	28	20	24	1.99
63723017--63723229	80	2.7	79	82	3	221	26	27	20	25	1.99
63723168--63723245	40	1.9	41	82	10	97	26	28	21	23	1.99
63724595--63724648	20	2.7	20	82	0	63	24	20	18	37	1.94
63724595--63724668	30	2.5	30	86	8	98	21	20	18	39	1.93
63724595--63724659	20	3.2	20	71	16	53	23	21	16	38	1.93
63734642--63734819	27	6.6	27	83	3	205	26	15	28	29	1.96
63734643--63734798	82	1.9	81	88	3	233	26	15	28	29	1.96
63734639--63734819	82	2.2	81	83	2	229	27	15	27	29	1.96
63737393--63737570	56	3.2	54	81	7	187	25	14	29	30	1.94
63737418--63737570	28	5.5	28	92	1	229	25	14	29	30	1.95
63737418--63737570	83	1.8	83	87	2	227	25	14	29	30	1.95
63740038--63740063	6	4.3	6	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63740057--63740087	4	7.8	4	92	0	53	22	3	0	74	0.96
63744956--63745170	39	5.6	40	82	11	227	24	20	27	27	1.99
63744956--63745170	79	2.8	78	76	12	239	24	20	27	27	1.99
63744993--63745202	111	1.9	111	82	3	262	24	20	27	27	1.99
63768477--63768698	39	5.6	39	91	2	295	24	20	27	27	1.99
63768438--63768698	79	3.3	78	84	6	305	24	20	27	27	1.99
63768439--63768698	118	2.2	118	82	4	310	24	20	28	26	1.99
63768477--63768733	79	3.3	79	84	3	234	25	20	28	26	1.99
63768474--63768733	118	2.2	117	80	5	290	25	20	27	26	1.99
63770354--63770379	6	4.3	6	100	0	52	15	0	0	84	0.62
63771391--63771460	21	3.4	21	92	2	106	17	21	20	41	1.90
63771401--63771460	10	5.8	10	80	16	61	16	21	20	41	1.90
63771684--63771712	13	2.2	13	100	0	58	27	0	10	62	1.28
63777976--63778011	17	2.1	17	100	0	72	36	25	22	16	1.94
63784040--63784074	10	3.5	10	88	0	52	37	22	25	14	1.92
63784037--63784084	20	2.4	20	75	0	60	31	18	29	20	1.97
63786794--63786850	5	11.0	5	75	20	55	3	17	1	77	1.00
63786794--63786850	16	3.7	14	82	15	60	3	17	1	77	1.00
63786792--63786861	20	3.3	20	73	18	63	4	18	1	75	1.04
63787766--63787831	11	5.7	11	84	15	89	15	3	7	74	1.17
63787765--63787831	13	5.7	12	81	15	86	14	2	7	74	1.16
63804108--63804190	30	2.7	30	80	12	89	13	21	2	62	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63804141--63804196	18	3.1	18	76	5	51	7	19	3	69	1.27
63804166--63804190	12	2.1	12	100	0	50	8	16	0	76	1.02
63804259--63804315	5	11.0	5	76	14	53	1	15	3	78	0.96
63804263--63804311	26	1.9	25	84	12	64	2	14	4	79	0.97
63804272--63804326	20	2.7	20	78	18	60	0	16	5	78	0.93
63805878--63806210	169	2.0	169	98	0	648	28	28	19	24	1.98
63807277--63807373	30	3.2	30	71	8	90	27	15	28	27	1.96
63809291--63809542	68	3.8	64	77	9	208	29	15	29	25	1.96
63809335--63809488	67	2.3	65	82	7	175	31	14	29	24	1.94
63810851--63810897	20	2.3	20	85	0	67	29	36	12	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349