Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  16  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4667041--4667108
22
3.0
22
86
2
91
61
10
2
25
1.42
4667072--4667122
12
4.3
12
74
20
54
58
3
1
35
1.28
4668261--4668312
11
4.9
11
83
9
72
28
28
0
42
1.56
4668261--4668319
31
1.9
31
89
0
91
28
30
0
40
1.57
4668255--4668312
20
2.7
21
86
10
82
31
27
0
41
1.56
4668339--4668369
15
2.1
15
93
0
53
22
6
0
70
1.09
4669468--4669494
7
3.9
7
100
0
54
25
0
14
59
1.36
4670520--4671250
116
6.3
116
95
0
1291
40
3
8
47
1.52
4678524--4678557
16
2.1
16
88
5
50
52
5
23
17
1.66
4679025--4679064
15
2.9
14
85
10
55
30
5
0
65
1.14
4679118--4679156
18
2.2
18
95
0
69
35
0
0
64
0.94
4679236--4679298
24
2.8
23
84
11
78
34
1
3
60
1.22
4679578--4679707
3
44.0
3
72
15
76
32
4
1
61
1.26
4692993--4693070
16
4.6
16
66
17
50
37
16
2
43
1.62
4693277--4693307
15
2.1
14
94
5
53
54
6
3
35
1.42
4693294--4693362
21
3.4
20
71
16
70
55
7
1
36
1.37
4695101--4695182
26
3.2
26
96
0
155
30
6
26
36
1.81
4702491--4702577
24
3.5
24
73
17
86
34
16
4
44
1.68
4702777--4702880
40
2.6
41
76
11
99
52
5
2
38
1.40
4707350--4708119
385
2.0
385
93
0
1317
25
23
18
32
1.97
4709677--4709802
47
2.7
47
97
0
234
23
19
28
29
1.98
4715892--4715934
3
14.3
3
100
0
86
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4716071--4716128
26
2.3
25
91
8
91
58
1
3
36
1.25
4716083--4716138
14
4.1
14
78
17
73
58
0
5
35
1.21
4716199--4716236
20
1.9
20
88
0
58
55
10
0
34
1.34
4716335--4716372
3
12.7
3
83
10
51
65
0
0
34
0.93
4716434--4716466
14
2.3
15
94
5
59
63
0
9
27
1.24
4717869--4718180
77
4.1
75
82
8
366
31
17
19
31
1.95
4717869--4718165
148
2.0
144
83
7
373
31
17
20
29
1.96
4718161--4718194
14
2.4
14
95
0
59
17
17
5
58
1.57
4718086--4718505
89
4.6
87
80
10
425
28
16
17
37
1.92
4718254--4718288
14
2.5
14
95
0
61
22
14
2
60
1.48
4718086--4718526
94
4.8
92
79
11
390
27
16
18
36
1.93
4718449--4718686
77
3.1
77
85
5
331
28
15
21
35
1.93
4720505--4720544
15
2.9
14
85
10
55
30
5
0
65
1.14
4720720--4720772
26
2.2
23
86
10
70
35
1
3
58
1.27
4720854--4720933
26
3.2
26
79
13
89
36
8
2
52
1.46
4720978--4721058
24
3.3
24
71
20
69
28
7
2
61
1.36
4726872--4726896
6
4.2
6
100
0
50
16
0
0
84
0.63
4727154--4727209
27
2.1
27
100
0
112
37
3
25
33
1.73
4727690--4727715
7
3.7
7
100
0
52
26
30
42
0
1.56
4736955--4736998
17
2.4
19
81
14
56
63
2
6
27
1.31
4737367--4737443
3
26.0
3
84
2
93
62
1
5
31
1.25
4745747--4745868
9
12.9
9
77
10
118
32
0
19
46
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4745751--4745868
57
2.1
57
88
0
173
32
0
19
47
1.55
4745994--4746905
241
3.7
241
94
3
1491
33
14
17
34
1.90
4746680--4746731
26
2.0
26
100
0
104
30
15
15
38
1.88
4750226--4750290
25
2.6
25
92
2
112
35
18
44
1
1.59
4751886--4751930
14
3.2
14
81
12
65
48
26
0
24
1.51
4752474--4752561
40
2.2
40
83
4
115
15
19
25
39
1.91
4754834--4755067
130
1.8
128
90
2
362
38
18
15
26
1.91
4756027--4756064
12
3.2
12
81
3
51
52
0
13
34
1.40
4756139--4756390
3
84.7
3
66
14
94
61
3
8
26
1.42
4756144--4756224
23
3.5
23
77
3
74
60
2
6
30
1.34
4758996--4759263
47
5.8
46
73
15
230
22
20
27
29
1.98
4758992--4759256
93
2.9
92
91
1
415
22
20
28
28
1.99
4761793--4761948
42
3.7
42
77
16
169
30
26
18
24
1.98
4769118--4769273
42
3.7
42
77
16
169
30
26
18
24
1.98
4776437--4776591
41
3.7
43
76
19
157
30
26
18
24
1.98
4776762--4776802
21
1.9
22
95
5
75
48
21
2
26
1.63
4776765--4776815
22
2.4
21
86
3
66
49
17
1
31
1.58
4783294--4783361
16
4.2
16
90
0
109
29
0
32
38
1.58
4783488--4783800
157
2.0
157
94
0
554
43
3
4
47
1.42
4783554--4783803
76
3.1
81
64
22
193
46
4
3
46
1.37
4783537--4783858
157
2.0
155
82
5
358
46
4
3
45
1.42
4784679--4784708
13
2.3
13
100
0
60
60
13
6
20
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4786777--4786835
28
2.1
27
96
3
109
47
32
8
11
1.70
4786910--4786936
6
4.5
6
100
0
54
18
18
18
44
1.87
4789010--4789101
22
4.1
21
69
12
58
54
6
7
31
1.54
4789867--4789919
27
2.0
27
88
0
79
1
41
28
28
1.67
4789871--4789928
27
2.1
27
80
0
62
3
43
27
25
1.71
4796354--4796401
24
2.0
24
100
0
96
50
12
0
37
1.41
4798054--4798136
43
1.9
43
87
0
121
30
34
12
22
1.91
4799001--4799038
18
2.2
18
90
9
62
68
0
0
31
0.90
4799115--4799153
7
5.9
7
82
11
55
43
15
17
23
1.87
4800688--4800714
14
1.9
14
100
0
54
66
0
0
33
0.92
4800845--4800901
16
4.3
14
70
28
52
52
0
0
47
1.00
4806372--4806433
26
2.4
27
81
10
67
59
4
0
35
1.19
4816171--4816211
21
2.0
21
90
0
64
19
29
21
29
1.98
4820389--4820430
19
2.2
19
95
0
75
42
11
11
33
1.78
4823363--4823483
60
2.0
60
98
0
233
33
23
13
29
1.92
4824047--4824082
19
1.9
18
88
5
54
36
2
2
58
1.27
4828603--4828921
128
2.5
127
84
2
415
26
14
19
38
1.91
4841006--4841062
18
3.2
18
87
0
78
26
22
17
33
1.96
4849705--4849768
12
5.6
12
75
12
55
35
0
0
64
0.94
4849696--4849781
34
2.5
34
75
11
93
37
0
3
59
1.15
4851657--4851957
132
2.3
133
82
7
355
34
18
17
29
1.94
4862435--4862481
21
2.2
22
92
3
78
21
38
19
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4868119--4868146
10
2.8
10
100
0
56
39
10
0
50
1.37
4869671--4869710
20
2.0
20
85
9
55
60
2
5
32
1.32
4869680--4869723
20
2.2
20
87
4
61
54
2
6
36
1.40
4869795--4869846
26
2.1
25
85
7
70
55
5
3
34
1.42
4869930--4870009
21
3.8
21
70
22
60
55
5
5
35
1.44
4870069--4870131
27
2.4
25
78
19
65
60
3
6
30
1.37
4870364--4870421
24
2.4
24
72
13
57
56
3
5
34
1.38
4870575--4870631
22
2.5
22
80
11
62
61
0
3
35
1.13
4870575--4870632
16
3.3
18
77
20
61
60
0
3
36
1.14
4872087--4872217
69
1.9
69
82
6
167
62
3
3
30
1.28
4872450--4872488
17
2.2
18
86
4
53
28
7
0
64
1.21
4872447--4872505
20
3.1
19
76
13
59
28
5
1
64
1.24
4872470--4872525
28
2.0
29
86
10
80
32
1
1
64
1.14
4872466--4872534
28
2.3
29
77
20
72
30
2
1
65
1.16
4875055--4875090
18
1.9
19
88
5
56
38
5
13
41
1.68
4876717--4876741
5
5.0
5
100
0
50
80
0
20
0
0.72
4889052--4889102
18
2.8
18
87
0
75
37
9
19
33
1.85
4889052--4889108
18
3.2
18
84
0
60
35
12
21
31
1.90
4889642--4889699
22
2.7
22
91
2
91
31
1
48
18
1.59
4889642--4889699
11
5.4
11
87
2
82
31
1
48
18
1.59
4890320--4890379
29
2.1
29
90
0
93
31
10
21
36
1.87
4892101--4892154
16
3.3
16
81
2
72
33
0
9
57
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4898613--4898668
23
2.4
23
81
3
67
55
5
1
37
1.33
4899496--4899626
59
2.2
60
78
9
151
25
8
9
55
1.61
4903347--4903404
31
1.9
31
85
3
82
46
10
20
22
1.81
4905001--4905051
20
2.6
19
82
11
59
60
1
0
37
1.08
4905032--4905081
24
2.0
24
84
7
64
46
2
0
52
1.12
4907419--4907458
21
1.9
21
85
10
55
40
0
5
55
1.22
4909884--4910021
27
5.1
26
89
4
159
35
22
23
18
1.96
4909884--4910019
54
2.5
55
87
2
186
35
22
23
19
1.96
4911638--4911768
25
5.2
25
93
4
210
36
25
5
32
1.79
4911646--4911768
51
2.5
49
94
2
210
36
26
4
32
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349