Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  175  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56774167--56774223
26
2.2
26
83
3
69
28
19
17
35
1.94
56774458--56774511
26
2.1
26
83
13
67
25
7
0
66
1.17
56784722--56784809
45
2.0
45
93
0
149
26
26
23
23
2.00
56792438--56792554
45
2.6
44
84
10
141
25
24
24
24
2.00
56800510--56800785
39
7.1
39
94
0
480
21
25
30
23
1.99
56805037--56805208
46
3.7
46
79
11
217
22
19
27
30
1.98
56805034--56805203
92
1.8
93
94
1
306
22
20
28
29
1.98
56805433--56805470
19
2.0
20
85
15
53
36
0
23
39
1.55
56820213--56820250
19
2.0
20
85
15
53
36
0
23
39
1.55
56828842--56828890
22
2.1
24
82
14
59
55
0
2
42
1.11
56832912--56833047
41
3.3
41
85
4
159
32
27
16
24
1.96
56832869--56833047
40
4.4
41
79
5
157
32
25
16
25
1.96
56840513--56840691
40
4.4
41
79
4
148
32
27
14
25
1.94
56840511--56840669
40
3.9
41
80
2
158
32
27
13
25
1.94
56840556--56840660
42
2.5
42
85
1
149
34
29
11
24
1.91
56846170--56846220
10
4.9
10
79
9
57
37
0
1
60
1.08
56856294--56856478
67
2.9
64
77
8
187
28
18
30
22
1.97
56862200--56862247
8
6.0
8
90
0
78
50
25
22
2
1.60
56866410--56866454
20
2.3
20
84
3
56
28
15
26
28
1.96
56875972--56876025
27
2.0
27
88
0
81
38
11
7
42
1.68
56883427--56883602
46
3.8
46
79
12
216
20
21
29
28
1.98
56883424--56883595
93
1.8
93
96
0
317
20
21
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56890332--56890507
46
3.8
46
76
12
189
21
20
28
29
1.98
56890329--56890500
93
1.8
93
92
0
290
21
20
29
28
1.98
56893072--56893140
31
2.2
31
97
2
129
8
14
28
47
1.74
56897240--56897322
43
1.9
43
87
4
123
21
15
31
31
1.95
56899045--56899195
40
3.8
40
84
4
173
25
27
21
25
1.99
56899064--56899248
40
4.7
40
82
6
216
25
27
22
24
2.00
56899064--56899248
79
2.3
80
79
8
207
25
27
22
24
2.00
56907553--56907735
40
4.6
40
95
0
312
21
28
22
27
1.99
56915924--56916074
40
3.8
40
88
5
223
22
28
22
26
1.99
56915924--56916074
81
1.9
80
90
1
239
22
28
22
26
1.99
56919325--56919366
18
2.3
18
84
8
50
69
4
19
7
1.31
56923604--56923645
20
2.1
20
95
0
75
45
28
7
19
1.76
56934754--56934877
48
2.6
48
81
5
146
24
13
29
33
1.93
56940907--56941052
37
3.9
37
89
0
211
26
30
19
23
1.98
56941258--56941591
47
7.1
47
91
0
506
27
29
11
31
1.91
56941397--56941473
22
3.4
22
67
22
68
28
28
12
29
1.94
56946676--56946899
40
5.6
40
88
3
308
23
22
27
26
2.00
56946675--56946899
81
2.8
80
89
2
328
23
22
27
26
2.00
56952925--56953003
25
3.3
25
66
16
76
31
29
5
34
1.79
56952875--56953277
47
8.6
47
96
0
698
29
29
8
33
1.86
56958102--56958325
40
5.7
40
86
7
273
24
22
27
25
2.00
56958102--56958325
79
2.8
80
85
8
287
24
22
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56958155--56958358
79
2.6
79
84
5
227
25
21
27
25
1.99
56967971--56967996
11
2.4
11
100
0
52
19
0
0
80
0.71
56973365--56973503
69
2.0
69
97
0
260
28
32
12
26
1.92
56976092--56976470
188
2.0
188
97
0
713
38
16
17
27
1.91
56978148--56978237
44
2.0
44
97
0
171
30
14
22
33
1.93
56989518--56989600
10
8.9
10
74
20
58
61
0
2
36
1.09
56989516--56989586
28
2.5
29
80
11
85
60
0
2
36
1.11
56989530--56989600
17
4.1
17
79
16
83
63
0
2
33
1.09
56989530--56989603
18
4.2
18
77
14
82
62
0
2
35
1.10
56989960--56990007
19
2.5
19
82
0
51
39
2
0
58
1.10
56990015--56990080
19
3.6
18
74
15
55
30
3
3
63
1.24
56990014--56990062
25
1.9
26
83
4
64
30
0
4
65
1.11
56990053--56990119
34
2.0
34
88
2
100
29
5
2
61
1.35
57004335--57004363
13
2.1
14
93
6
51
79
0
20
0
0.74
57039344--57039528
27
6.9
27
87
0
226
28
22
9
40
1.84
57039344--57039556
81
2.6
81
81
0
246
30
22
8
38
1.84
57039344--57039554
54
3.9
54
84
0
143
30
21
9
38
1.84
57039452--57039836
54
7.1
54
75
6
215
38
19
9
32
1.83
57039520--57039754
81
2.9
80
87
3
310
41
20
8
29
1.82
57039452--57039842
27
14.4
27
77
6
191
38
19
9
33
1.84
57039896--57039987
27
3.4
27
83
8
116
34
19
26
19
1.96
57040792--57040966
26
6.8
26
82
0
201
29
21
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57041111--57041202
42
2.2
42
90
0
148
27
11
20
40
1.88
57041226--57041304
31
2.5
31
93
0
140
26
17
26
29
1.98
57042043--57042212
48
3.5
48
79
3
153
27
32
15
25
1.95
57049395--57049534
72
1.9
73
81
12
173
33
23
23
19
1.97
57053079--57053220
50
2.8
50
81
0
149
32
24
15
27
1.95
57053392--57053425
17
2.1
15
89
10
50
38
26
0
35
1.57
57057038--57057170
45
3.0
45
77
13
143
24
15
27
32
1.96
57064093--57064206
27
4.2
26
72
12
79
45
0
1
51
1.17
57065559--57065604
22
2.1
22
100
0
92
43
13
21
21
1.86
57070208--57070385
51
3.5
51
90
3
261
28
13
30
28
1.94
57073511--57073686
46
3.7
46
82
3
192
25
22
30
21
1.99
57076525--57076609
44
1.9
45
85
2
118
36
11
24
27
1.90
57076753--57076870
47
2.5
47
92
0
200
36
15
24
23
1.93
57076857--57077153
55
5.5
55
82
7
349
35
18
24
21
1.95
57076857--57077153
108
2.7
107
91
1
459
35
18
24
21
1.95
57082506--57082607
50
2.0
50
96
0
186
41
0
18
39
1.57
57083069--57083353
55
5.3
54
80
9
330
35
17
23
23
1.95
57083071--57083353
108
2.6
107
92
2
442
35
17
23
22
1.95
57085293--57085338
22
2.0
23
83
8
58
13
28
30
28
1.94
57097171--57097205
13
2.7
13
100
0
70
34
5
17
42
1.73
57097616--57097654
16
2.4
17
86
4
53
28
7
10
53
1.62
57097576--57097654
33
2.3
35
82
6
90
27
6
7
58
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57099133--57099193
32
1.9
32
82
0
77
40
0
0
59
0.98
57102593--57102638
23
2.0
23
100
0
92
34
4
21
39
1.73
57110406--57110592
101
1.8
103
88
5
290
37
12
14
35
1.84
57110566--57110636
36
2.0
36
100
0
142
30
18
11
39
1.86
57112383--57112423
21
2.0
21
81
18
50
21
26
19
31
1.97
57117897--57117941
16
2.7
16
89
6
63
42
28
0
28
1.56
57118128--57118338
117
1.8
117
88
0
323
22
7
27
42
1.79
57118937--57119046
33
3.3
34
76
9
93
28
4
46
20
1.70
57119146--57119294
51
2.9
51
87
0
217
30
8
27
32
1.87
57121994--57122038
22
2.0
22
91
0
72
42
8
11
37
1.72
57123010--57123080
32
2.2
33
82
12
94
26
9
22
40
1.85
57128812--57129255
49
8.8
49
85
5
546
25
17
27
29
1.97
57128812--57129255
103
4.4
103
91
3
627
25
17
27
29
1.97
57128812--57129255
152
2.9
147
86
5
582
25
17
27
29
1.97
57132583--57132641
26
2.3
25
82
8
66
32
16
18
32
1.94
57136809--57137334
40
13.0
40
91
2
818
24
21
29
24
1.99
57136809--57137334
122
4.3
122
94
0
903
24
21
29
24
1.99
57136809--57137334
162
3.2
160
90
2
827
24
21
29
24
1.99
57142777--57142830
28
1.9
28
84
0
72
27
18
29
24
1.98
57142805--57142885
40
2.0
40
88
4
119
24
19
28
27
1.99
57150641--57150864
40
5.7
40
86
7
273
24
22
27
25
2.00
57150641--57150883
79
3.1
79
84
9
282
24
22
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57153394--57153463
35
2.0
35
97
0
131
41
20
14
24
1.89
57157298--57157411
50
2.3
50
80
4
131
35
16
12
35
1.86
57163734--57163985
40
6.3
40
91
1
314
24
27
21
25
1.99
57163807--57164038
80
2.9
80
86
6
267
23
27
22
26
1.99
57163772--57164038
120
2.2
120
81
7
301
24
27
21
25
1.99
57163970--57164047
40
1.9
41
82
10
97
26
28
20
24
1.99
57171701--57171939
39
6.3
38
82
10
210
25
28
21
25
1.99
57171924--57172001
40
1.9
41
82
10
97
26
28
21
23
1.99
57174421--57174604
40
4.6
39
80
9
194
25
22
27
24
2.00
57174473--57174639
79
2.1
79
83
6
205
26
21
26
24
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349