genome.fa.s1.2.7.7.80.10.50.1000.287.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  287  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96204305--96204335	5	6.4	5	92	7	55	77	0	0	22	0.77
96204308--96204335	14	2.0	14	100	0	56	78	0	0	21	0.75
96205035--96205550	124	4.1	126	81	5	564	30	15	16	37	1.91
96205605--96205738	67	2.0	65	80	9	146	44	14	0	40	1.50
96205605--96205738	34	4.0	33	77	13	123	44	14	0	40	1.50
96207773--96208826	268	3.9	268	97	1	1969	39	8	5	46	1.59
96209428--96209475	26	1.9	25	84	16	64	50	0	8	41	1.33
96216946--96217043	24	4.0	24	82	6	117	37	4	36	21	1.73
96221940--96222020	33	2.4	34	77	8	94	28	18	23	29	1.98
96221940--96222032	32	2.8	31	73	9	78	25	20	25	27	1.99
96226404--96226443	21	1.9	21	89	0	62	45	2	17	35	1.62
96231227--96231282	26	2.3	24	77	19	62	44	1	0	53	1.11
96231232--96231286	24	2.1	26	83	12	69	45	1	0	52	1.11
96232338--96232392	29	1.9	29	81	3	67	49	5	0	45	1.25
96234694--96234788	41	2.3	41	88	0	145	44	2	7	46	1.43
96234895--96234934	22	1.9	20	90	10	62	30	0	7	62	1.23
96236947--96237202	43	6.0	43	84	2	327	30	26	15	26	1.96
96236947--96237205	129	2.0	129	92	0	428	30	26	15	27	1.96
96245373--96245420	22	2.2	21	77	3	51	37	6	0	56	1.25
96250309--96250504	40	4.9	40	90	5	290	24	28	22	23	1.99
96258287--96258475	39	4.8	39	94	0	315	24	29	23	22	1.99
96264651--96264841	40	4.8	40	89	2	287	22	23	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96264647--96264853	79	2.6	80	84	6	296	23	22	28	24	1.99
96273366--96273461	6	18.2	5	76	14	72	76	1	4	18	1.01
96273366--96273449	6	13.3	6	77	8	78	76	1	4	17	1.03
96273364--96273459	38	2.5	36	79	14	104	75	2	4	18	1.07
96273367--96273458	9	9.3	9	71	23	55	76	1	4	18	1.02
96273367--96273461	26	3.6	26	77	16	88	75	1	4	18	1.02
96288724--96288773	25	2.0	25	100	0	100	20	36	12	32	1.89
96290735--96290901	27	6.3	27	75	6	117	29	26	16	28	1.97
96292490--96292753	46	5.7	46	79	9	211	23	28	18	29	1.98
96296356--96296453	43	2.3	43	85	7	128	20	27	31	20	1.97
96297661--96297693	13	2.6	13	90	4	50	48	12	0	39	1.40
96300429--96300467	19	2.1	19	90	0	60	38	10	2	48	1.51
96302662--96302698	10	3.8	10	89	3	58	75	0	8	16	1.02
96302667--96302701	15	2.4	14	86	9	52	74	0	5	20	1.02
96308768--96308824	30	1.9	30	85	0	78	42	5	24	28	1.76
96319975--96320022	25	1.9	25	82	0	60	33	22	14	29	1.94
96320155--96320226	26	2.8	25	81	10	74	26	20	23	29	1.99
96320180--96320233	26	2.1	25	86	10	74	31	16	20	31	1.95
96320165--96320239	26	2.9	26	75	16	68	26	21	22	29	1.99
96320442--96320543	31	3.3	31	88	1	152	36	13	23	26	1.92
96328915--96329093	27	6.6	27	79	8	166	26	14	29	30	1.95
96328912--96329093	82	2.2	81	83	3	240	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96337101--96337279	27	6.6	27	81	8	175	26	14	29	29	1.95
96337101--96337279	55	3.3	54	81	7	184	26	14	29	29	1.95
96337102--96337259	82	1.9	82	87	5	230	25	14	29	30	1.95
96338983--96339158	26	6.6	26	76	12	135	29	29	15	25	1.96
96339005--96339157	53	2.9	51	78	10	137	29	30	15	25	1.95
96347089--96347269	27	6.6	27	78	7	150	30	28	14	25	1.95
96347089--96347269	55	3.3	55	77	9	163	30	28	14	25	1.95
96347116--96347268	82	1.9	83	86	6	222	30	28	15	26	1.95
96362081--96362270	39	4.9	39	81	5	172	24	20	26	29	1.99
96362087--96362283	78	2.5	78	78	8	202	23	19	26	30	1.98
96364533--96364667	40	3.4	40	100	0	270	25	20	26	27	1.99
96364533--96364687	80	1.9	79	93	3	267	25	21	26	27	1.99
96364696--96365026	28	11.6	28	70	9	197	22	18	29	28	1.98
96364696--96365039	57	6.0	57	87	0	463	23	18	29	28	1.98
96364696--96365039	114	3.0	114	91	0	517	23	18	29	28	1.98
96364695--96365026	171	1.9	170	90	2	522	22	18	29	28	1.98
96368755--96368828	22	3.2	22	66	23	62	32	13	31	22	1.93
96368733--96368867	47	2.9	47	90	0	216	34	11	29	24	1.91
96368977--96369085	37	2.9	37	95	0	191	22	19	31	26	1.98
96375315--96375343	15	1.9	15	100	0	58	27	0	17	55	1.42
96378985--96379112	48	2.8	45	79	8	157	27	15	29	27	1.96
96378985--96379157	94	1.8	94	84	0	238	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96380038--96380106	30	2.3	30	94	0	129	17	27	36	18	1.94
96382100--96382137	18	2.1	18	90	0	58	50	15	13	21	1.78
96382281--96382332	27	2.0	26	88	3	77	36	21	25	17	1.94
96382265--96382418	67	2.3	67	97	0	290	31	22	28	18	1.97
96382348--96382399	27	2.0	26	88	3	77	36	21	25	17	1.94
96382496--96382835	168	2.0	168	100	0	680	37	27	11	23	1.90
96382830--96383174	27	12.5	27	81	7	365	26	19	17	35	1.94
96383206--96383380	27	6.5	27	86	0	233	38	8	23	29	1.83
96383201--96383380	54	3.3	54	92	0	288	37	8	22	31	1.84
96383372--96383446	27	2.8	27	84	8	82	29	10	20	40	1.86
96386011--96386197	56	3.4	56	85	2	261	28	14	23	32	1.95
96386011--96386228	111	2.0	112	85	8	302	27	15	24	32	1.95
96387634--96387709	38	2.0	38	97	0	143	30	10	22	36	1.88
96392471--96392882	207	2.0	207	93	1	702	34	8	18	38	1.82
96394763--96394824	28	2.2	28	91	0	97	32	27	8	32	1.86
96394933--96394995	28	2.2	29	86	8	85	23	22	22	31	1.98
96394943--96395006	28	2.2	28	83	2	74	26	25	17	31	1.97
96396077--96396111	10	3.4	10	84	7	52	28	8	8	54	1.60
96398250--96398596	47	7.4	47	91	1	543	27	30	8	32	1.86
96406829--96406893	28	2.3	28	91	0	103	32	27	7	32	1.85
96406999--96407061	28	2.2	29	88	8	94	22	22	23	31	1.98
96407009--96407072	28	2.2	28	86	2	83	25	25	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96407525--96407563	19	2.1	19	85	0	51	15	5	7	71	1.26
96408877--96408923	24	2.0	24	91	0	76	44	23	19	12	1.85
96408874--96408924	8	6.4	8	79	0	57	49	21	17	11	1.79
96409134--96409230	29	3.4	29	88	5	135	26	12	29	30	1.93
96410703--96410879	55	3.2	55	92	3	286	27	15	24	32	1.95
96410703--96410910	111	1.9	111	85	9	291	26	14	25	33	1.95
96415441--96415570	40	3.0	41	75	17	129	27	18	23	30	1.98
96415597--96415950	57	6.0	57	76	13	283	23	19	29	27	1.98
96415597--96415951	118	3.0	115	83	9	380	23	19	29	27	1.98
96415597--96415937	61	5.8	57	76	14	293	23	19	29	28	1.98
96425706--96425928	40	5.7	40	81	8	244	24	21	27	26	1.99
96425706--96425927	79	2.8	80	79	10	249	24	21	27	26	1.99
96428945--96429135	40	4.8	40	90	3	217	27	27	20	24	1.99
96428916--96429134	80	2.8	79	79	5	235	28	27	20	23	1.99
96428989--96429134	40	3.7	40	92	3	224	28	26	20	23	1.99
96437106--96437297	40	4.8	40	91	3	219	27	27	20	23	1.99
96439449--96439557	37	2.9	37	91	0	173	28	30	18	22	1.97
96439662--96439801	47	3.0	47	92	0	226	25	28	11	35	1.90
96439706--96439779	22	3.2	22	66	23	62	22	29	13	33	1.93
96455478--96455628	40	3.8	40	91	1	223	25	21	28	24	1.99
96455478--96455654	40	4.5	39	85	6	214	25	23	27	23	2.00
96463510--96463687	40	4.5	40	84	6	202	26	24	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96463506--96463687	80	2.3	80	84	4	226	27	23	26	22	2.00
96470372--96470595	40	5.7	40	86	6	289	23	22	28	25	2.00
96470372--96470595	79	2.8	79	84	9	287	23	22	28	25	2.00
96470372--96470628	79	3.3	79	81	7	229	24	22	27	25	2.00
96480090--96480124	12	2.9	12	91	0	52	48	8	17	25	1.75
96480285--96480403	27	4.5	26	82	5	139	37	20	25	16	1.93
96480285--96480406	54	2.3	54	84	4	158	37	19	24	18	1.94
96480629--96480694	27	2.4	28	77	7	73	37	21	18	22	1.94
96480672--96480987	27	12.0	27	82	6	353	23	22	18	35	1.96
96480676--96480987	81	4.0	81	83	8	419	23	22	18	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349