Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  17  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4915402--4915541
27
5.2
28
90
5
184
35
22
24
17
1.96
4917159--4917320
78
2.1
78
94
0
279
37
24
4
33
1.77
4917159--4917320
26
6.2
26
91
0
243
37
24
4
33
1.77
4918401--4918477
32
2.3
33
82
8
95
45
7
6
40
1.59
4919251--4919317
11
6.4
10
76
20
66
58
1
1
38
1.17
4919251--4919289
9
4.1
9
84
12
51
61
0
0
38
0.96
4920232--4920268
14
2.6
14
91
0
56
78
10
0
10
0.97
4923742--4923784
21
2.0
21
86
8
61
27
6
9
55
1.57
4934622--4934650
15
2.0
15
93
6
51
68
0
0
31
0.89
4935856--4935913
16
3.6
16
79
9
64
41
6
25
25
1.80
4935884--4935922
16
2.4
16
86
0
51
35
7
25
30
1.84
4936882--4936915
16
2.1
16
88
0
50
50
14
17
17
1.79
4939711--4939751
21
2.0
21
90
0
64
29
21
29
19
1.98
4941654--4941687
16
2.1
16
88
0
50
50
14
17
17
1.79
4946948--4947011
30
2.1
31
82
8
78
48
6
3
42
1.44
4957617--4957664
25
2.0
24
84
12
62
58
0
6
35
1.23
4957616--4957670
25
2.2
25
78
12
60
56
1
5
36
1.33
4958419--4958463
18
2.5
18
89
7
65
44
0
4
51
1.21
4962933--4962987
20
2.6
21
85
8
76
56
27
0
16
1.40
4964281--4964362
22
3.6
22
69
19
60
28
4
6
60
1.41
4964533--4964592
22
2.8
21
80
12
68
31
6
3
58
1.40
4964503--4964622
60
2.0
63
83
8
158
31
5
4
58
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4964670--4964700
16
1.9
16
93
0
53
32
9
0
58
1.31
4964996--4965070
27
2.8
28
80
17
95
34
5
4
56
1.41
4965026--4965082
23
2.4
25
85
5
73
33
7
5
54
1.50
4965366--4965391
9
2.9
9
100
0
52
34
0
11
53
1.37
4971785--4971991
47
4.3
47
80
5
173
25
16
28
29
1.97
4971839--4971959
47
2.6
47
89
1
181
26
17
25
30
1.97
4981290--4981427
73
1.9
73
93
3
242
30
21
22
26
1.98
4981345--4981524
87
2.1
87
92
0
297
26
18
18
35
1.95
4981504--4981611
54
2.0
55
92
1
182
29
13
16
39
1.88
4982030--4982076
22
2.1
22
88
0
67
38
38
0
23
1.55
4982038--4982100
22
3.0
21
77
9
56
49
34
0
15
1.45
4982287--4982378
22
4.5
21
70
19
68
31
6
4
57
1.44
4982257--4982377
60
2.0
63
83
8
160
31
5
4
58
1.40
4982424--4982454
16
1.9
16
93
0
53
32
9
0
58
1.31
4982776--4982832
23
2.4
25
85
5
73
33
7
5
54
1.50
4982902--4982937
19
1.9
18
88
5
54
38
5
2
52
1.39
4994427--4994461
3
11.3
3
93
6
61
34
0
0
65
0.93
4994574--4994603
12
2.5
12
94
0
51
36
6
0
56
1.26
5000824--5000873
22
2.3
22
96
0
91
28
52
8
12
1.66
5000951--5000990
21
2.0
21
95
5
73
5
0
22
72
1.04
5001322--5001376
12
4.2
13
79
11
60
23
1
0
74
0.91
5001331--5001415
3
28.3
3
71
21
56
29
3
1
65
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5001335--5001415
12
6.8
12
75
12
78
29
3
1
65
1.17
5004261--5004307
19
2.5
19
86
6
60
29
19
8
42
1.80
5016818--5016854
7
5.0
8
87
12
53
81
0
18
0
0.70
5016817--5016851
15
2.3
15
95
0
61
85
0
14
0
0.59
5016817--5016851
8
4.7
7
86
13
52
85
0
14
0
0.59
5017783--5018193
142
2.9
142
95
0
752
26
15
20
37
1.92
5018520--5018627
26
4.2
26
96
0
198
31
7
25
36
1.83
5020114--5020166
26
2.0
26
82
7
63
37
20
15
26
1.92
5021473--5021586
56
2.0
56
98
0
219
32
14
16
36
1.89
5021943--5022048
44
2.4
44
77
3
115
38
15
16
29
1.89
5023603--5023632
12
2.5
12
94
0
51
36
6
0
56
1.26
5025883--5025918
18
2.1
18
90
10
58
36
0
5
58
1.22
5025766--5026159
200
2.0
200
97
0
752
36
12
13
37
1.83
5031487--5031526
21
2.0
20
85
5
53
45
5
0
50
1.23
5036439--5036500
18
3.4
17
72
16
52
58
3
3
35
1.31
5036803--5036851
20
2.5
19
81
12
64
46
6
2
44
1.39
5040912--5040940
14
2.1
14
100
0
58
58
0
0
41
0.98
5045726--5045786
31
2.0
31
83
0
77
26
19
18
36
1.94
5045825--5045952
61
2.1
60
82
4
150
45
17
13
24
1.84
5046211--5046246
18
2.1
18
90
10
58
36
0
5
58
1.22
5052546--5052689
46
3.1
46
75
14
152
29
28
20
22
1.98
5055787--5055834
17
2.7
18
78
12
55
18
4
4
72
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5058677--5058794
59
2.0
59
98
0
227
53
3
16
27
1.58
5066493--5066539
16
2.9
16
75
15
51
65
0
0
34
0.93
5066491--5066545
15
3.6
16
74
16
53
65
0
0
34
0.93
5066477--5066535
25
2.3
25
85
8
75
64
0
0
35
0.94
5066489--5066572
39
2.2
39
82
8
100
60
0
0
39
0.97
5066490--5066549
24
2.4
25
81
10
61
63
0
0
36
0.95
5077498--5077610
43
2.7
43
80
1
129
35
24
12
27
1.91
5080675--5080713
20
2.0
21
85
14
57
2
28
5
64
1.28
5080732--5080760
14
2.0
15
93
6
51
0
24
0
75
0.80
5083673--5083709
18
2.1
18
90
5
58
51
2
0
45
1.15
5084519--5084597
22
3.7
21
67
11
52
45
27
1
25
1.61
5084770--5084817
23
2.1
22
85
11
62
27
0
22
50
1.50
5084858--5085181
41
7.9
41
91
2
438
20
23
22
33
1.97
5085212--5085237
12
2.2
12
100
0
52
46
30
15
7
1.74
5085983--5086271
84
3.3
86
81
8
253
39
16
9
34
1.81
5086024--5086291
84
3.1
85
82
9
319
38
19
8
33
1.82
5086500--5086730
87
2.6
87
86
4
293
35
9
18
36
1.84
5086523--5086782
87
2.9
88
83
5
258
34
10
16
39
1.82
5088562--5088619
26
2.1
28
81
6
66
55
5
8
31
1.52
5089144--5089173
12
2.5
12
94
0
51
56
0
6
36
1.26
5089285--5089326
3
14.0
3
100
0
84
66
0
0
33
0.92
5091211--5091325
57
2.0
57
98
0
221
36
16
13
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5091607--5091636
13
2.3
13
94
0
51
66
10
13
10
1.44
5091232--5092041
284
2.8
285
88
4
1143
38
18
14
28
1.91
5091232--5091974
141
5.3
141
90
2
1102
37
19
14
27
1.91
5091891--5091920
13
2.3
13
94
0
51
66
10
13
10
1.44
5092904--5092939
8
4.6
8
86
6
56
0
13
0
86
0.58
5092904--5092938
7
4.7
7
89
10
52
0
14
0
85
0.59
5092904--5092938
15
2.3
15
95
0
61
0
14
0
85
0.59
5104247--5104304
26
2.1
28
81
6
66
55
5
8
31
1.52
5104958--5104984
3
9.0
3
100
0
54
66
0
0
33
0.92
5108049--5108085
14
2.5
15
86
4
58
32
0
0
67
0.91
5114801--5114977
50
3.5
49
91
3
273
36
15
22
26
1.93
5114953--5115062
31
3.5
31
91
0
175
28
20
28
23
1.99
5115095--5115218
47
2.7
46
83
2
149
28
14
27
29
1.95
5115189--5115303
42
2.7
42
81
9
144
32
14
25
27
1.95
5122603--5122720
47
2.5
46
80
4
139
33
21
18
26
1.96
5122603--5122737
46
2.9
46
82
3
155
33
18
22
25
1.97
5123119--5123483
44
8.2
44
68
12
131
29
16
22
31
1.96
5123182--5123418
44
5.4
44
73
5
147
28
20
20
30
1.97
5123136--5123472
89
3.8
89
71
8
265
28
17
21
31
1.97
5123211--5123540
176
1.9
176
87
0
480
29
19
20
31
1.97
5123741--5123877
44
3.1
44
76
8
143
33
18
19
27
1.96
5124086--5124120
12
2.8
12
95
4
61
77
14
0
8
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5125587--5125616
15
2.1
15
93
6
53
36
0
0
63
0.95
5126346--5126430
42
2.0
42
100
0
170
36
11
16
35
1.85
5131543--5131580
19
2.0
19
85
10
51
31
2
0
65
1.06
5133219--5133253
8
4.4
8
100
0
70
0
25
62
11
1.28
5133782--5133835
15
3.3
17
80
16
53
35
0
5
59
1.21
5133790--5133836
18
2.7
18
80
3
51
31
0
4
63
1.13
5133834--5133885
17
2.9
18
80
11
54
30
5
1
61
1.30
5133852--5133956
27
4.0
26
80
14
103
33
2
0
62
1.16
5133892--5133962
14
5.4
14
81
11
87
36
1
0
61
1.05
5133892--5133956
27
2.5
27
92
5
107
35
0
0
64
0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349