genome.fa.s1.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  130  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41459720--41459757	3	12.7	3	100	0	76	65	0	34	0	0.93
41465052--41465187	66	2.1	66	83	5	168	21	10	26	41	1.85
41487461--41487489	15	1.9	15	100	0	58	55	6	3	34	1.44
41487805--41487870	20	3.3	20	65	23	57	51	9	13	25	1.70
41487805--41487885	40	2.0	40	100	0	162	50	7	12	29	1.67
41491803--41492211	48	8.7	49	75	15	280	24	30	18	26	1.98
41491803--41492211	93	4.3	96	75	12	343	24	30	18	26	1.98
41495735--41495783	21	2.3	21	85	0	71	26	20	22	30	1.98
41498768--41498843	35	2.2	35	85	0	107	26	25	27	21	1.99
41504636--41504676	21	2.0	21	95	0	73	53	9	2	34	1.47
41508977--41509090	57	2.0	56	80	8	124	35	22	15	26	1.94
41512849--41512892	17	2.6	17	92	0	70	31	38	11	18	1.86
41515121--41515206	42	2.0	43	90	4	138	23	23	2	51	1.60
41519671--41519790	56	2.1	56	98	0	231	45	9	23	22	1.81
41520918--41521100	79	2.3	81	83	7	223	23	22	28	25	1.99
41520919--41521102	40	4.6	40	82	9	207	23	22	28	25	1.99
41520971--41521135	79	2.1	79	83	6	201	24	21	28	25	1.99
41526528--41526554	13	2.1	13	100	0	54	22	22	7	48	1.75
41528198--41528241	14	3.1	14	80	0	61	59	6	2	31	1.36
41528154--41528241	32	2.9	30	90	6	135	52	9	4	34	1.54
41531243--41531288	24	1.9	24	90	0	74	17	15	17	50	1.79
41531245--41531295	24	2.2	24	82	3	59	21	19	15	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41531467--41531531	8	8.5	8	88	8	82	24	0	4	70	1.06
41531467--41531531	15	4.3	15	90	2	94	24	0	4	70	1.06
41531467--41531533	23	2.9	24	86	6	93	23	0	4	71	1.04
41531798--41531874	35	2.2	35	97	2	145	53	2	5	38	1.37
41531983--41532014	15	2.1	15	94	0	55	31	3	6	59	1.38
41532119--41532170	21	2.5	22	84	6	63	51	26	0	21	1.47
41532336--41532376	21	2.0	21	85	9	57	53	31	0	14	1.41
41539575--41539752	27	6.6	27	84	3	205	29	28	15	26	1.96
41539596--41539751	82	1.9	81	88	3	233	29	28	15	26	1.96
41543577--41543608	10	3.3	10	95	4	57	31	6	0	62	1.20
41546922--41547267	47	7.3	47	90	3	482	32	9	31	27	1.88
41552724--41552783	29	2.1	29	96	0	111	31	36	15	16	1.90
41553973--41554002	11	2.7	11	100	0	60	66	0	0	33	0.92
41555810--41555882	25	2.8	26	85	6	87	41	10	17	30	1.84
41558253--41558297	24	2.0	22	82	8	54	24	22	8	44	1.81
41558818--41558842	3	8.3	3	100	0	50	36	0	32	32	1.58
41565244--41565354	57	1.9	57	90	0	177	19	10	27	41	1.85
41566382--41566426	15	2.9	16	83	9	67	46	0	0	53	1.00
41566973--41567014	22	1.9	22	85	0	57	47	21	7	23	1.75
41567360--41567392	14	2.3	15	89	5	50	51	24	0	24	1.48
41569242--41569300	31	1.9	31	86	6	84	28	22	16	32	1.96
41572579--41572837	47	5.5	47	79	10	232	25	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41575454--41575487	18	1.9	17	88	5	50	61	11	11	14	1.56
41590347--41590530	39	4.7	40	80	8	207	25	27	22	24	2.00
41598487--41598668	79	2.3	81	82	8	214	24	27	23	24	2.00
41598485--41598668	40	4.7	40	82	7	216	25	27	22	24	2.00
41606856--41606962	36	2.8	39	83	10	116	23	22	28	25	1.99
41614397--41614561	40	4.3	40	85	6	207	24	20	28	26	1.99
41622179--41622401	40	5.6	40	86	3	236	24	21	27	26	1.99
41622254--41622436	79	2.3	80	82	1	226	25	20	27	25	1.99
41624845--41624986	40	3.6	40	90	2	216	23	22	26	26	2.00
41628479--41628526	22	2.3	21	86	10	71	22	6	18	52	1.68
41628485--41628528	22	2.0	22	95	0	79	22	6	20	50	1.72
41631263--41631329	27	2.5	28	80	7	75	52	2	0	44	1.16
41631362--41631399	18	2.1	19	85	5	51	55	2	0	42	1.14
41633942--41634000	31	1.9	31	83	10	77	52	1	3	42	1.28
41633927--41634021	39	2.3	40	81	13	97	52	1	2	44	1.19
41634014--41634039	9	2.9	9	100	0	52	34	0	0	65	0.93
41636069--41636147	37	2.1	37	90	0	122	25	31	18	24	1.98
41636266--41636628	47	7.6	49	90	3	546	28	30	8	32	1.87
41636266--41636628	96	3.8	95	91	3	550	28	30	8	32	1.87
41638314--41638338	13	1.9	13	100	0	50	32	16	20	32	1.94
41640568--41640646	29	2.7	29	86	5	106	27	32	15	24	1.95
41640628--41640730	43	2.4	43	100	0	206	26	35	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41642593--41642671	37	2.1	37	90	0	122	25	31	18	24	1.98
41642790--41643152	49	7.6	49	89	3	537	28	30	8	32	1.86
41642801--41643198	191	2.1	190	84	6	511	29	29	7	33	1.85
41644836--41644860	13	1.9	13	100	0	50	32	16	20	32	1.94
41646217--41646293	34	2.2	34	97	2	145	58	5	10	25	1.52
41646768--41646882	53	2.2	53	80	9	128	63	0	6	30	1.18
41647015--41647060	23	2.0	23	87	8	67	58	4	0	36	1.18
41653591--41653653	30	2.1	30	84	0	81	31	26	7	33	1.85
41656852--41657023	67	2.6	66	81	7	170	31	16	29	22	1.96
41656876--41657058	67	2.8	64	78	8	201	28	16	31	23	1.96
41658062--41658091	16	1.9	16	93	6	53	50	0	13	36	1.42
41658869--41659137	47	5.7	47	77	13	193	27	19	30	22	1.98
41658874--41659131	140	1.8	140	85	4	360	28	18	30	22	1.98
41663068--41663480	47	8.6	47	92	2	619	28	30	8	32	1.87
41663068--41663480	145	2.9	143	90	4	618	28	30	8	32	1.87
41671343--41671465	47	2.6	45	80	13	135	22	30	18	28	1.98
41671763--41671825	30	2.1	30	84	0	81	30	25	9	34	1.88
41672996--41673027	11	2.9	11	95	0	55	34	3	28	34	1.73
41674562--41674633	33	2.2	33	87	7	103	25	0	13	61	1.33
41674870--41674903	16	2.1	16	88	0	50	67	5	0	26	1.13
41677005--41677040	14	2.5	15	86	9	56	27	0	0	72	0.85
41683516--41683547	16	2.0	16	93	0	55	46	0	18	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41683859--41684198	180	1.9	180	86	0	482	38	10	19	31	1.85
41685931--41686008	34	2.3	34	80	8	88	42	3	10	43	1.56
41694834--41694871	17	2.2	18	86	13	53	57	2	2	36	1.26
41696242--41696300	22	2.6	23	81	8	75	30	18	28	22	1.97
41702925--41703053	29	4.5	29	89	2	172	33	25	12	28	1.92
41711016--41711144	29	4.5	29	89	2	172	33	25	12	28	1.92
41718381--41718479	52	1.9	52	89	0	153	36	19	26	18	1.94
41718383--41718505	52	2.4	52	84	0	147	39	18	24	17	1.92
41725681--41725790	42	2.6	42	88	0	166	23	30	27	19	1.98
41727066--41727206	57	2.4	58	82	5	153	28	19	18	34	1.95
41728558--41728859	150	2.0	150	97	0	568	28	13	16	41	1.86
41736985--41737023	20	2.0	20	89	0	60	15	5	2	76	1.06
41738671--41738702	16	2.0	16	93	0	55	9	6	34	50	1.60
41742501--41742536	17	2.1	17	100	0	72	30	27	11	30	1.91
41742872--41743078	103	2.0	103	96	0	378	29	27	15	26	1.96
41748154--41748481	47	6.9	47	88	2	422	31	10	30	27	1.91
41748252--41748373	23	5.2	23	63	24	67	28	10	32	27	1.90
41748253--41748377	25	5.2	24	62	21	66	28	10	32	28	1.90
41748463--41748599	46	3.0	46	87	0	193	35	8	30	25	1.86
41750087--41750403	40	7.9	40	91	2	460	26	20	26	26	1.99
41750409--41750519	57	1.9	57	83	0	141	23	19	28	27	1.98
41751362--41751504	37	3.9	37	90	0	214	24	32	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41751552--41752203	48	13.6	48	93	0	1106	30	27	6	34	1.82
41758150--41758434	47	6.1	47	92	0	417	32	11	29	26	1.91
41758150--41758483	94	3.6	94	85	4	442	32	10	29	26	1.90
41758408--41758549	46	3.1	46	88	0	203	34	7	30	27	1.85
41762022--41762060	20	2.1	19	85	9	53	2	28	17	51	1.59
41766671--41766764	6	15.3	6	72	12	75	50	14	18	17	1.79
41766692--41766761	25	2.8	26	85	10	92	48	15	20	15	1.81
41766692--41766764	31	2.4	31	85	0	92	49	15	19	16	1.80
41766904--41766967	33	2.0	32	84	3	83	35	20	23	20	1.96
41767270--41767515	27	9.1	27	87	4	318	41	6	21	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349