genome.fa.s1.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  157  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50575220--50575964	40	18.6	40	95	0	1267	24	27	18	28	1.98
50578367--50578416	6	8.3	6	84	0	55	28	20	2	50	1.59
50580498--50580662	40	4.2	40	82	3	190	27	26	21	24	1.99
50585698--50585826	46	2.8	46	93	0	213	20	20	28	29	1.98
50587188--50587255	24	2.8	24	80	12	68	67	4	22	5	1.30
50588057--50588196	40	3.6	39	71	10	115	27	19	25	27	1.99
50588459--50588493	17	2.2	15	90	10	52	31	2	14	51	1.57
50594117--50594146	15	2.0	15	100	0	60	40	33	6	20	1.78
50595881--50595956	28	2.7	28	85	0	98	23	21	23	31	1.98
50596399--50596484	35	2.5	35	83	5	111	32	25	17	24	1.97
50597454--50597513	27	2.2	27	88	5	86	30	0	15	55	1.41
50597538--50598149	108	5.6	109	89	3	846	24	1	14	59	1.43
50598384--50598436	21	2.5	22	84	3	63	33	3	7	54	1.46
50607254--50607346	48	1.9	48	86	0	132	47	10	9	32	1.71
50611164--50611217	25	2.2	25	80	12	58	3	31	0	64	1.11
50611406--50611449	22	2.0	22	81	0	52	61	0	6	31	1.22
50612391--50612451	27	2.3	27	80	11	79	18	19	50	11	1.76
50612560--50612625	3	22.3	3	75	9	64	59	0	39	1	1.07
50612667--50612691	12	2.1	12	100	0	50	60	0	40	0	0.97
50612782--50612809	13	2.2	13	100	0	56	35	0	0	64	0.94
50613310--50613536	109	2.0	114	85	9	311	33	3	7	55	1.48
50614663--50614696	15	2.2	16	90	10	54	29	0	17	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50616628--50616852	40	5.6	40	81	3	238	27	23	25	23	2.00
50616628--50616852	80	2.8	80	82	3	265	27	23	25	23	2.00
50616628--50616852	120	1.9	121	80	8	271	27	23	25	23	2.00
50624780--50625003	40	5.6	40	81	7	233	26	24	26	23	2.00
50624780--50625003	79	2.8	80	84	4	274	26	24	26	23	2.00
50624780--50625003	119	1.9	121	82	7	287	26	24	26	23	2.00
50626640--50626664	13	1.9	13	100	0	50	24	12	16	48	1.79
50630334--50630462	47	2.7	47	91	2	197	21	17	30	31	1.96
50631830--50631871	18	2.4	17	88	11	59	21	2	23	52	1.59
50633205--50633279	24	2.9	25	80	9	89	38	16	21	24	1.92
50633201--50633294	28	3.5	28	75	16	99	36	13	22	27	1.92
50633318--50633565	51	4.9	51	88	3	369	30	13	24	31	1.94
50633318--50633565	99	2.5	101	89	4	369	30	13	24	31	1.94
50639996--50640072	24	3.0	25	90	7	111	37	15	20	25	1.92
50640108--50640358	51	4.9	51	89	0	369	32	13	25	28	1.94
50644397--50644497	29	3.5	29	90	1	150	29	28	14	26	1.95
50648925--50649242	49	6.6	49	74	12	207	26	19	29	24	1.98
50657409--50657675	40	6.7	40	94	0	471	22	27	20	30	1.98
50659907--50659971	32	2.0	32	96	0	121	30	7	23	38	1.83
50661453--50661505	26	2.0	26	82	7	63	37	20	15	26	1.92
50664557--50664665	37	2.9	37	95	0	191	26	31	19	22	1.98
50664791--50665669	48	18.0	48	94	2	1506	31	27	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50664791--50665669	146	6.0	144	94	2	1506	31	27	6	34	1.82
50664791--50665669	98	9.0	96	94	3	1506	31	27	6	34	1.82
50668631--50668879	55	4.7	53	78	10	206	36	17	24	22	1.95
50668630--50668830	108	1.8	110	89	4	318	35	17	24	22	1.95
50668786--50668879	49	1.9	49	93	0	161	38	17	23	21	1.93
50669071--50669101	16	1.9	16	93	0	53	41	0	22	35	1.54
50671717--50671743	14	1.9	14	100	0	54	37	22	3	37	1.72
50684121--50684160	21	2.0	20	90	5	62	17	32	37	12	1.87
50692462--50692505	21	2.1	21	100	0	88	25	27	9	38	1.86
50698799--50699186	47	8.1	47	91	2	596	32	9	30	28	1.88
50698799--50699186	143	2.7	143	92	2	627	32	9	30	28	1.88
50699305--50699383	37	2.1	37	90	0	122	24	18	31	25	1.98
50700767--50700827	10	6.1	10	74	12	54	32	13	24	29	1.93
50700768--50700828	20	3.0	20	83	9	79	32	13	26	27	1.93
50711154--50711264	37	3.0	37	98	0	213	44	20	8	27	1.80
50711926--50712067	55	2.6	55	80	2	151	27	27	28	16	1.97
50721366--50721558	48	4.0	48	87	4	264	28	24	18	27	1.98
50721363--50721555	95	2.0	96	86	3	273	27	24	18	29	1.98
50724240--50724417	27	6.6	27	83	3	205	26	15	28	29	1.96
50724241--50724396	82	1.9	81	88	3	233	26	15	28	29	1.96
50724237--50724417	82	2.2	81	83	2	229	27	15	27	29	1.96
50732437--50732614	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50732438--50732593	82	1.9	81	88	3	233	26	15	28	29	1.96
50732434--50732614	82	2.2	81	83	2	229	27	15	27	29	1.96
50743113--50743143	16	1.9	16	93	0	53	35	22	0	41	1.54
50743110--50743149	20	2.0	20	85	0	53	37	22	0	40	1.54
50750875--50751027	43	3.6	42	77	10	157	26	15	24	33	1.95
50761788--50761853	28	2.3	28	76	2	69	34	10	27	27	1.90
50765988--50766194	55	3.8	53	77	6	193	21	23	16	37	1.93
50765988--50766194	53	3.8	54	77	1	200	21	23	16	37	1.93
50783870--50783903	13	2.6	13	90	9	52	64	11	23	0	1.26
50785280--50785319	1	40.0	1	89	0	62	0	5	0	95	0.29
50785280--50785319	14	2.9	14	96	3	73	0	5	0	95	0.29
50789303--50789362	22	2.7	22	68	0	57	5	13	18	63	1.47
50796462--50796558	41	2.4	40	77	8	106	35	21	15	27	1.94
50797493--50797578	26	3.3	26	79	14	88	2	18	3	75	1.05
50800889--50801040	40	3.8	40	89	2	207	25	28	21	24	1.99
50809040--50809191	40	3.8	40	89	2	207	25	28	21	24	1.99
50814382--50814407	6	4.3	6	100	0	52	30	19	0	50	1.48
50818107--50818146	15	2.5	17	80	19	50	52	22	0	25	1.47
50823082--50823131	24	2.1	24	100	0	100	42	30	12	16	1.84
50823333--50823537	27	7.6	27	83	3	214	29	29	16	25	1.96
50854446--50854608	46	3.6	47	92	6	266	28	30	9	31	1.89
50857964--50858051	38	2.3	39	94	2	151	26	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50858427--50858497	28	2.5	28	88	6	99	25	32	15	26	1.95
50858479--50858622	43	3.4	43	98	1	274	26	35	15	22	1.94
50860625--50861083	47	9.7	47	96	1	823	29	30	9	30	1.88
50860828--50860900	22	3.3	22	64	17	60	28	31	10	28	1.91
50860625--50861083	186	2.4	187	95	2	812	29	30	9	30	1.88
50869690--50869774	42	2.0	42	100	0	170	38	28	7	25	1.82
50874315--50874397	43	1.9	43	92	0	139	33	10	16	38	1.84
50875254--50875308	28	2.0	28	96	0	101	49	7	29	14	1.70
50878020--50878057	17	2.2	18	85	4	51	26	5	13	55	1.59
50887302--50887433	66	2.0	66	97	1	248	16	15	24	43	1.87
50892218--50892248	13	2.4	13	88	0	53	32	32	25	9	1.88
50906730--50906898	43	4.0	44	83	6	195	33	26	13	26	1.93
50910028--50910115	45	2.0	45	93	0	149	36	23	13	26	1.92
50910048--50910122	21	3.4	21	64	16	53	37	26	13	22	1.91
50922985--50923042	26	2.2	26	96	0	107	32	0	27	39	1.57
50923335--50923507	43	4.0	43	72	8	145	27	17	23	31	1.97
50927682--50927712	16	1.9	16	93	0	53	35	22	0	41	1.54
50927679--50927718	20	2.0	20	90	0	62	37	20	0	42	1.52
50927972--50928158	55	3.5	53	78	8	182	22	24	17	35	1.95
50935232--50935321	40	2.2	40	98	0	171	33	25	8	32	1.87
50939322--50939405	43	2.0	43	90	4	134	35	8	19	36	1.82
50946654--50946718	30	2.2	30	88	0	94	24	1	12	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50959234--50959425	38	5.0	38	87	1	240	21	20	25	32	1.98
50967436--50967589	38	4.0	39	87	1	195	19	21	27	31	1.97
50976049--50976112	31	2.1	31	90	0	101	25	23	14	37	1.92
50976305--50976444	23	6.0	23	87	8	194	30	22	21	26	1.99
50976495--50976561	20	3.3	20	93	0	116	32	20	11	34	1.90
50976495--50976550	11	5.5	11	71	16	57	32	19	12	35	1.89
50976598--50976645	25	1.9	25	86	0	69	25	16	27	31	1.97
50983695--50983860	43	3.9	43	87	0	208	22	30	20	26	1.98
50983725--50983907	86	2.1	86	83	7	228	24	30	20	25	1.99
50992633--50992725	39	2.4	39	85	0	123	23	26	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349