genome.fa.s1.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  166  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53759871--53759915	23	2.0	21	84	16	56	40	6	0	53	1.27
53759844--53759914	31	2.3	31	83	13	85	40	5	0	53	1.24
53761846--53761919	28	2.6	28	89	8	123	27	35	13	24	1.93
53770107--53770135	12	2.3	13	94	5	51	20	6	6	65	1.40
53775973--53776006	18	1.9	18	88	5	52	29	17	11	41	1.85
53779212--53779267	11	5.5	11	71	16	57	35	12	19	32	1.89
53779201--53779267	20	3.3	20	93	0	116	34	11	20	32	1.90
53779316--53779508	24	8.0	24	90	4	273	30	22	20	26	1.98
53787548--53787614	20	3.3	20	91	0	107	35	11	19	32	1.88
53787664--53787856	24	8.0	24	91	1	298	30	21	20	26	1.98
53788497--53788522	12	2.2	12	100	0	52	26	0	7	65	1.20
53798153--53798226	28	2.6	28	82	16	107	27	35	13	24	1.93
53800262--53800300	20	2.0	20	89	0	60	46	20	0	33	1.51
53802333--53802537	40	5.1	40	84	4	236	26	27	20	24	1.99
53809468--53809669	47	4.3	47	83	2	217	32	27	15	24	1.95
53809741--53809777	18	2.1	18	100	0	74	21	24	10	43	1.84
53810260--53810290	16	1.9	16	93	0	53	54	16	0	29	1.42
53812907--53812939	16	2.1	16	88	11	50	42	6	0	51	1.26
53813205--53813235	5	6.2	5	100	0	62	19	0	0	80	0.71
53819947--53819992	22	2.1	22	88	11	69	32	0	2	65	1.05
53820016--53820055	21	2.0	20	90	5	62	42	0	2	55	1.13
53819965--53820123	61	2.6	59	82	4	185	43	0	3	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53820294--53820341	16	3.0	16	81	0	60	27	20	4	47	1.68
53820296--53820365	32	2.2	32	87	5	106	31	24	2	41	1.69
53824006--53824043	14	2.7	15	88	8	53	23	21	5	50	1.69
53829158--53829714	189	3.0	186	79	6	611	33	19	20	27	1.96
53831518--53831594	27	2.9	25	78	21	77	31	6	2	59	1.36
53831792--53831915	46	2.7	47	75	10	121	25	4	8	62	1.41
53836240--53836309	34	2.1	34	100	0	140	52	24	2	20	1.59
53837272--53837311	21	1.9	21	100	0	80	30	35	20	15	1.93
53842089--53842123	17	2.0	18	88	5	54	14	31	0	54	1.40
53845056--53845209	28	5.5	28	95	0	256	33	27	12	26	1.92
53845056--53845234	56	3.2	56	89	1	261	33	27	12	26	1.92
53853239--53853389	28	5.5	28	94	3	247	33	28	11	26	1.92
53853239--53853389	54	2.8	54	92	4	250	33	28	11	26	1.92
53853239--53853412	54	3.2	53	86	8	226	33	28	12	26	1.92
53858749--53858809	32	1.9	31	90	3	95	29	24	18	27	1.98
53858781--53858977	39	4.9	38	77	15	168	26	28	20	24	1.99
53858829--53858977	77	1.9	78	81	11	182	24	28	22	24	1.99
53865988--53866251	40	6.7	40	87	5	333	26	26	21	25	1.99
53871471--53871632	41	3.9	40	68	20	109	28	26	21	23	1.99
53871509--53871612	42	2.5	40	80	10	111	26	25	21	25	1.99
53873888--53873936	10	4.7	10	85	9	53	61	6	0	32	1.21
53873899--53873942	22	2.0	22	90	0	70	56	4	0	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53876821--53876871	25	1.9	27	84	11	70	19	13	13	52	1.73
53879209--53879397	49	3.9	49	81	2	211	26	19	29	24	1.98
53879232--53879618	48	8.3	48	74	9	196	27	19	26	25	1.99
53879461--53879618	42	3.6	42	77	14	140	28	20	26	24	1.99
53879413--53879627	90	2.4	90	81	3	236	27	19	25	27	1.98
53887925--53887967	18	2.3	20	80	15	56	41	6	2	48	1.43
53890426--53890468	22	1.9	23	86	13	63	44	4	4	46	1.45
53899097--53899136	20	2.0	20	90	0	62	35	10	2	52	1.48
53901634--53901892	27	9.6	27	89	0	338	32	15	16	36	1.90
53901633--53901892	81	3.2	81	89	0	385	32	15	16	36	1.90
53901633--53901922	81	3.6	81	82	7	243	33	15	16	34	1.90
53901888--53902003	27	4.3	27	78	4	99	42	14	18	24	1.88
53902039--53902088	23	2.2	23	86	13	68	26	14	18	42	1.87
53902952--53903011	30	2.0	30	96	0	111	33	21	20	25	1.97
53912450--53912602	52	3.0	50	80	10	148	24	18	27	29	1.98
53912558--53912652	46	2.0	47	84	6	122	25	15	28	30	1.96
53921208--53921275	34	2.0	34	82	5	84	20	25	25	29	1.99
53926550--53926618	9	8.0	9	69	26	51	55	20	0	24	1.44
53926550--53926603	10	4.9	11	74	17	58	55	18	0	25	1.43
53926550--53926603	23	2.5	22	87	6	74	55	18	0	25	1.43
53926572--53926611	21	2.1	19	86	13	55	50	20	0	30	1.49
53930696--53930910	45	4.9	45	83	4	253	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53935496--53935744	40	6.7	37	80	15	241	24	22	28	24	1.99
53935582--53935716	66	2.0	70	92	5	233	25	20	28	25	1.99
53935618--53935676	29	2.0	31	93	6	104	27	18	28	25	1.98
53935652--53935763	40	2.8	40	86	5	111	25	21	28	25	1.99
53943424--53943646	40	5.7	40	85	8	264	24	22	27	25	2.00
53943424--53943646	80	2.8	79	84	8	294	24	22	27	25	2.00
53945810--53946027	40	5.5	40	92	2	343	23	23	27	24	2.00
53949593--53949763	46	3.7	46	78	10	204	22	21	27	28	1.99
53949590--53949760	93	1.8	93	94	0	306	22	21	28	28	1.99
53956749--53956966	40	5.5	40	89	2	316	23	22	27	25	2.00
53962739--53962964	48	4.7	47	76	8	168	29	19	29	22	1.98
53962781--53962964	96	1.9	96	84	4	246	29	17	29	22	1.97
53964155--53964194	21	2.0	20	85	5	53	12	37	27	22	1.90
53966066--53966130	22	3.0	22	82	8	78	32	21	24	21	1.98
53966272--53966394	41	3.0	41	91	0	192	26	29	21	21	1.99
53966654--53966706	27	2.0	27	92	0	88	35	15	11	37	1.83
53966660--53966815	27	5.7	27	80	8	138	30	6	18	44	1.75
53966754--53966993	54	4.4	54	80	9	240	28	7	22	42	1.79
53966773--53966993	27	8.2	26	80	11	173	27	7	22	42	1.80
53966635--53966993	81	4.4	81	75	7	255	29	7	21	42	1.80
53967013--53967081	27	2.6	27	85	0	102	27	17	18	36	1.94
53969738--53969838	32	3.2	32	78	0	94	32	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53970304--53970390	27	3.2	27	85	6	131	29	13	18	37	1.89
53970317--53970481	27	6.2	26	75	8	102	30	10	21	36	1.87
53975850--53976033	67	2.8	64	75	11	178	28	17	30	23	1.97
53975742--53977384	820	2.0	820	99	0	3241	32	12	25	29	1.92
53981137--53981308	46	3.7	46	79	16	201	21	19	29	29	1.98
53984901--53984925	13	1.9	13	100	0	50	56	0	20	24	1.43
53985346--53985576	48	4.9	48	75	13	217	27	20	24	27	1.99
53988258--53988350	24	3.9	24	73	9	84	35	19	23	21	1.96
53992324--53992437	35	3.3	35	79	9	133	27	9	22	40	1.85
53995067--53995304	47	5.1	47	93	0	359	31	10	30	26	1.91
53995162--53995239	25	3.2	25	63	23	67	28	10	32	29	1.90
53995278--53995368	46	2.0	46	86	0	128	32	8	31	26	1.87
54003364--54003394	15	2.1	15	100	0	62	12	12	25	48	1.77
54003488--54003598	35	3.2	33	80	10	123	26	9	22	42	1.83
54006210--54006368	40	4.0	40	93	2	259	23	22	27	27	1.99
54010279--54010430	68	2.3	68	81	8	172	26	30	14	28	1.95
54010893--54010953	30	2.0	30	83	0	77	31	22	4	40	1.75
54016727--54016801	36	2.1	36	92	0	123	42	12	12	33	1.79
54030041--54030160	43	2.8	43	72	5	116	27	17	25	30	1.97
54035598--54035653	28	2.0	28	100	0	112	32	10	14	42	1.80
54040407--54040462	30	1.9	29	85	7	78	39	8	25	26	1.85
54042089--54042144	28	2.0	28	96	0	103	32	12	14	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54048080--54048107	11	2.5	11	100	0	56	32	0	0	67	0.91
54059850--54059897	14	3.5	13	78	21	53	41	6	12	39	1.68
54060045--54060126	43	1.9	43	82	9	105	28	20	24	26	1.99
54063097--54063184	29	3.1	29	83	1	115	26	14	29	29	1.95
54064287--54064321	18	2.0	18	88	5	54	34	20	14	31	1.92
54070878--54070949	38	1.9	37	94	2	126	38	18	20	22	1.93
54071741--54071766	12	2.2	12	100	0	52	34	0	7	57	1.27
54077619--54077649	5	6.2	5	100	0	62	77	0	22	0	0.77
54082966--54083207	47	5.1	47	87	4	331	33	9	29	27	1.89
54083040--54083115	24	3.2	24	62	23	61	28	13	32	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349