genome.fa.s1.2.7.7.80.10.50.1000.317.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  317  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105860346--105860411	30	2.2	30	83	8	80	50	12	4	33	1.60
105860499--105860536	15	2.6	15	95	4	69	47	0	13	39	1.42
105861516--105861567	24	2.0	27	82	10	65	44	0	3	51	1.19
105863348--105863381	16	2.1	17	88	5	52	47	0	20	32	1.51
105864400--105864457	30	1.9	30	89	0	89	41	5	24	29	1.76
105864669--105864700	13	2.5	13	94	0	55	31	0	12	56	1.37
105864795--105865036	50	4.7	50	86	4	297	26	24	29	19	1.99
105864795--105865044	100	2.4	103	88	6	364	26	24	29	20	1.99
105871993--105872050	30	1.9	30	89	0	89	41	3	24	31	1.71
105872262--105872293	13	2.5	13	94	0	55	31	0	12	56	1.37
105872388--105872629	50	4.7	50	86	4	297	26	24	29	19	1.99
105872388--105872637	100	2.4	103	88	6	364	26	24	29	20	1.99
105874057--105874172	25	4.6	25	74	8	101	25	25	18	29	1.98
105874059--105874172	50	2.3	50	80	8	133	25	25	19	29	1.98
105879931--105880248	168	1.9	168	91	0	519	33	20	15	30	1.94
105881777--105881855	36	2.2	36	81	4	88	26	17	16	39	1.91
105884529--105884566	20	1.9	20	88	0	58	50	15	10	23	1.75
105885565--105885644	30	2.6	30	80	11	83	48	1	5	45	1.32
105902871--105902911	21	2.0	21	90	0	64	29	21	29	19	1.98
105910182--105910233	23	2.3	23	80	9	63	61	0	0	38	0.96
105918186--105918272	45	1.9	45	85	0	120	28	10	21	39	1.86
105929090--105929147	23	2.5	23	85	0	80	25	17	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105929134--105929184	23	2.2	23	85	0	75	27	19	27	25	1.99
105937036--105937085	24	2.1	24	92	0	82	44	22	4	30	1.71
105937820--105937875	17	3.2	17	68	22	53	35	30	1	32	1.68
105937804--105937875	35	2.1	35	97	0	135	34	29	2	33	1.72
105942018--105942105	35	2.5	35	86	0	122	34	34	17	14	1.90
105944330--105944433	51	2.1	50	92	1	172	33	19	20	26	1.96
105950632--105950737	53	2.0	53	98	0	203	44	7	10	37	1.67
105951289--105951329	22	2.0	22	90	9	68	39	2	2	56	1.26
105955368--105955426	28	2.1	28	84	9	77	42	0	10	47	1.37
105955970--105956048	36	2.3	34	82	8	88	27	1	5	65	1.21
105957963--105958008	23	2.0	23	91	0	74	34	26	13	26	1.92
105970242--105970440	99	2.0	99	98	0	380	41	18	13	27	1.87
105978896--105979034	67	2.1	67	98	1	271	26	23	12	37	1.91
105980312--105980398	41	2.1	41	83	12	108	63	0	4	32	1.15
105980341--105980400	21	3.0	20	75	20	63	65	0	3	31	1.09
105982541--105982571	2	15.5	2	93	0	53	45	0	0	54	0.99
105983284--105983791	132	3.8	131	78	3	453	27	19	17	35	1.94
106016745--106016872	63	2.0	64	98	1	249	24	18	14	42	1.88
106019028--106019070	16	2.7	16	88	0	68	27	27	25	18	1.98
106020875--106021070	39	5.0	39	93	0	329	20	22	30	26	1.99
106027063--106027100	19	2.0	20	89	5	60	42	0	2	55	1.14
106028208--106028279	33	2.2	33	84	2	90	45	13	19	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106032367--106032405	12	3.2	12	81	0	51	66	0	2	30	1.05
106040119--106040151	11	2.9	12	86	13	52	33	0	0	66	0.92
106041623--106041686	32	2.0	32	96	0	119	45	9	10	34	1.72
106045294--106045430	35	3.9	35	89	1	204	31	24	13	31	1.93
106045311--106045446	70	1.9	70	85	2	184	30	25	11	32	1.92
106048179--106048215	14	2.6	15	83	12	51	56	0	5	37	1.22
106049151--106049176	6	4.3	6	100	0	52	19	19	15	46	1.85
106053661--106053893	111	2.1	111	93	0	396	47	8	5	38	1.57
106054526--106054733	41	5.1	41	81	8	158	40	23	19	16	1.91
106054744--106054861	54	2.2	54	81	0	146	47	34	0	16	1.53
106054973--106055021	7	7.0	7	78	0	53	26	2	26	44	1.65
106054989--106055030	21	2.0	21	86	9	59	23	7	28	40	1.81
106060018--106060055	17	2.2	18	85	4	51	63	2	23	10	1.39
106060037--106060091	12	4.6	12	73	15	51	63	0	23	12	1.29
106064660--106064706	19	2.5	19	76	10	51	21	2	4	72	1.12
106064838--106065068	43	5.4	43	89	4	326	24	18	31	25	1.98
106070239--106070265	14	1.9	14	100	0	54	40	0	0	59	0.98
106070447--106070501	16	3.4	16	92	0	92	29	25	7	38	1.83
106074567--106074596	9	3.3	9	90	0	51	46	13	10	30	1.75
106075478--106075528	19	2.6	20	78	12	61	39	1	7	50	1.42
106075467--106075534	19	3.6	18	71	9	55	35	1	7	55	1.37
106080006--106080031	12	2.2	12	100	0	52	26	23	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106088003--106088180	63	2.8	63	86	3	243	32	32	8	26	1.86
106089396--106089468	29	2.4	30	81	4	85	41	4	13	41	1.64
106089594--106089633	19	2.2	19	86	4	55	55	5	7	32	1.50
106092703--106092758	28	2.0	28	89	6	87	37	16	7	39	1.76
106092942--106093002	31	2.0	31	90	3	97	36	14	8	40	1.76
106106611--106106665	28	2.0	28	96	0	101	43	18	0	38	1.50
106106615--106106663	15	3.4	15	71	21	50	42	16	0	40	1.48
106107682--106107725	22	2.0	22	100	0	88	68	4	9	18	1.34
106109468--106109527	20	3.0	20	78	11	61	38	3	0	58	1.15
106122456--106122661	94	2.2	94	90	1	326	57	12	19	11	1.64
106123366--106123409	21	2.0	22	86	4	63	59	2	0	38	1.10
106123428--106123467	17	2.4	17	95	0	71	47	15	17	20	1.83
106131887--106131915	10	2.7	11	89	10	51	17	13	6	62	1.52
106132744--106132855	56	2.0	56	98	0	215	43	16	12	27	1.83
106134234--106134272	2	19.5	2	100	0	78	51	0	48	0	1.00
106137314--106137641	174	1.9	174	95	0	593	30	24	14	30	1.95
106137594--106137672	29	2.7	30	82	13	110	30	30	13	25	1.94
106145572--106145639	29	2.3	29	85	5	93	27	30	13	27	1.94
106145461--106145788	174	1.9	174	96	0	602	30	24	14	29	1.95
106145741--106145819	29	2.7	30	82	13	110	30	30	13	25	1.94
106147956--106148000	22	2.0	22	91	0	72	48	15	2	33	1.57
106152538--106152582	22	2.0	22	91	0	72	48	15	2	33	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106154625--106154668	22	2.0	23	81	4	54	45	9	9	36	1.68
106165015--106165040	13	2.0	13	100	0	52	38	7	15	38	1.76
106167634--106167728	27	3.4	27	84	4	109	21	25	29	24	1.99
106173755--106173798	3	15.0	3	85	4	63	31	4	0	63	1.14
106174204--106174268	30	2.1	32	85	5	89	35	3	4	56	1.35
106174194--106174271	26	2.8	26	78	17	86	34	2	5	57	1.34
106174297--106174345	20	2.6	20	84	12	68	32	0	8	59	1.27
106174231--106174344	10	12.0	9	66	13	50	35	1	6	57	1.34
106179030--106179208	25	7.2	25	70	15	81	36	24	21	17	1.94
106179141--106179223	26	3.2	24	79	14	87	34	25	21	18	1.96
106180958--106180987	8	3.6	8	91	8	51	73	0	3	23	0.98
106181269--106181301	11	2.9	12	86	13	52	33	0	0	66	0.92
106181517--106181559	22	2.0	22	85	0	59	58	11	11	18	1.63
106182499--106182645	43	3.4	43	76	10	140	27	17	26	29	1.97
106184697--106184849	39	3.9	40	77	6	120	27	28	22	20	1.99
106184767--106184853	39	2.2	39	91	0	138	26	29	21	21	1.99
106188455--106188542	25	3.5	25	73	1	68	31	20	23	23	1.98
106189949--106189998	26	1.9	26	95	0	91	34	22	12	32	1.90
106202404--106202452	19	2.6	19	90	6	73	63	2	0	34	1.06
106202484--106202520	14	2.5	15	86	13	58	43	10	0	45	1.39
106212121--106212244	33	3.8	33	91	0	194	20	9	39	29	1.85
106215119--106215265	31	4.7	31	90	0	231	43	18	11	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106218698--106218902	94	2.2	94	92	1	342	56	12	20	11	1.65
106239608--106239650	20	2.2	20	100	0	86	18	9	13	58	1.62
106242210--106242277	34	2.0	34	94	0	118	35	23	8	32	1.86
106243799--106243897	27	3.7	27	95	0	171	21	30	28	20	1.98
106246765--106246828	19	3.1	21	86	6	60	37	18	9	34	1.83
106246782--106246879	19	5.2	19	90	7	155	36	15	10	37	1.81
106246793--106246879	36	2.3	37	90	7	140	37	13	11	36	1.81
106246782--106246889	36	2.9	35	75	20	103	37	14	10	37	1.80
106247377--106247708	132	2.5	131	89	3	508	26	20	18	34	1.96
106247509--106248353	220	3.8	220	94	0	1460	27	22	18	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349