Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  202  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65362219--65362471
68
3.8
65
76
10
196
26
28
15
29
1.96
65362920--65362980
30
2.0
30
83
0
77
31
22
8
37
1.84
65365510--65365558
20
2.3
20
82
10
53
32
8
14
44
1.74
65372290--65372343
20
2.6
21
85
8
67
22
3
1
72
1.10
65372302--65372343
21
2.0
20
86
4
57
23
4
2
69
1.20
65374645--65374682
17
2.2
18
85
4
51
63
2
23
10
1.39
65374664--65374718
12
4.6
12
73
15
51
63
0
23
12
1.29
65376066--65376099
6
5.3
6
86
13
50
17
0
0
82
0.67
65376066--65376099
14
2.7
12
86
13
50
17
0
0
82
0.67
65377805--65377864
13
4.8
12
83
6
75
16
5
3
75
1.12
65380056--65380121
21
3.1
20
79
14
62
78
4
15
1
0.98
65380067--65380123
5
11.0
5
78
10
53
78
3
15
1
0.96
65380071--65380119
26
1.9
25
84
12
64
79
4
14
2
0.97
65380192--65380216
12
2.1
12
100
0
50
76
0
16
8
1.02
65380186--65380241
18
3.1
18
76
5
51
69
3
19
7
1.27
65380192--65380273
30
2.7
31
77
5
87
62
2
23
12
1.42
65380779--65380835
20
2.8
20
81
2
69
28
35
12
24
1.91
65382934--65382974
13
2.8
15
85
14
59
73
0
12
14
1.11
65383622--65383655
15
2.3
15
89
0
50
35
29
32
2
1.73
65387591--65387631
13
2.8
15
85
14
59
73
0
12
14
1.11
65388278--65388311
15
2.3
15
89
0
50
35
29
32
2
1.73
65393128--65393164
12
3.1
12
92
0
56
75
5
5
13
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65393146--65393225
28
2.8
28
81
12
92
71
5
15
8
1.28
65394250--65394354
47
2.2
47
85
8
133
59
1
24
14
1.46
65395248--65395301
20
2.7
20
82
0
63
24
20
18
37
1.94
65395248--65395321
30
2.5
30
86
8
98
21
20
18
39
1.93
65395248--65395312
20
3.2
20
71
16
53
23
21
16
38
1.93
65396735--65396780
20
2.3
20
84
0
65
30
34
13
21
1.91
65409064--65409110
22
2.2
22
85
7
62
57
2
25
14
1.49
65411401--65411444
22
2.0
22
90
0
70
27
36
2
34
1.70
65412778--65412835
10
5.7
10
76
11
64
29
27
13
29
1.94
65412778--65412838
20
3.0
20
83
9
79
27
26
13
32
1.93
65414198--65414232
11
3.3
11
88
8
54
74
5
2
17
1.14
65414198--65414231
10
3.3
10
91
4
50
73
5
2
17
1.16
65414215--65414292
12
6.2
12
68
21
52
74
2
14
8
1.16
65415254--65415288
18
1.9
18
88
11
54
57
0
20
22
1.41
65417352--65417409
10
5.7
10
76
11
64
29
27
13
29
1.94
65417352--65417412
20
3.0
20
83
9
79
27
26
13
32
1.93
65422582--65422666
30
2.8
30
80
7
109
12
21
1
64
1.34
65422642--65422666
12
2.1
12
100
0
50
8
16
0
76
1.02
65422669--65422699
12
2.6
12
94
0
53
25
16
9
48
1.76
65422747--65422803
5
11.0
5
75
20
55
3
19
1
75
1.04
65422747--65422810
16
4.2
14
77
16
65
4
18
1
75
1.06
65422745--65422814
20
3.3
20
69
18
54
4
20
1
74
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65430477--65430541
20
3.3
19
73
16
51
38
16
21
23
1.93
65432316--65432378
33
1.9
33
84
12
85
12
26
6
53
1.62
65432446--65432503
18
3.3
18
82
2
73
5
13
6
74
1.20
65432478--65432507
11
2.7
11
100
0
60
0
10
6
83
0.81
65432393--65432507
6
18.7
6
67
12
63
5
18
3
73
1.17
65432373--65432529
65
2.4
68
74
20
154
7
19
3
70
1.26
65433574--65433608
11
3.3
11
92
4
54
14
2
8
74
1.17
65435136--65435232
30
3.2
30
70
8
81
27
14
28
28
1.95
65439102--65439159
10
5.7
10
72
11
55
29
25
13
31
1.94
65439102--65439162
20
3.0
20
79
9
70
27
24
13
34
1.93
65440416--65440445
10
2.9
10
95
5
51
80
6
3
10
1.01
65440501--65440539
13
2.9
13
84
3
51
71
5
2
20
1.17
65441710--65441744
18
1.9
18
88
11
54
57
0
20
22
1.41
65444012--65444055
22
2.0
22
95
0
79
25
36
4
34
1.76
65446562--65446609
22
2.2
22
85
3
62
58
2
25
14
1.48
65446633--65446675
20
2.2
20
86
0
59
53
2
30
13
1.53
65448915--65448958
22
2.0
22
90
0
70
27
36
2
34
1.70
65450290--65450347
10
5.7
10
76
11
64
29
27
13
29
1.94
65450290--65450350
20
3.0
20
83
9
79
27
26
13
32
1.93
65452300--65452331
4
8.0
4
100
0
64
75
0
0
25
0.81
65456821--65457685
40
21.6
40
95
0
1516
25
27
19
27
1.99
65464775--65465519
40
18.6
40
94
1
1251
25
26
19
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65469044--65469192
43
3.5
41
77
5
127
26
18
26
27
1.98
65469044--65469211
85
2.0
85
80
4
187
25
18
26
29
1.98
65470302--65470382
30
2.7
30
67
7
74
29
28
17
24
1.97
65478176--65478220
13
3.5
13
93
3
74
15
6
2
75
1.11
65484814--65485037
40
5.6
40
89
1
290
24
20
27
26
1.99
65484775--65485037
80
3.3
80
83
3
300
24
20
27
26
1.99
65492717--65492979
40
6.6
40
88
3
316
24
20
28
26
1.99
65492756--65493014
80
3.3
80
84
3
247
25
20
28
25
1.99
65496902--65496941
19
2.1
19
85
0
53
25
35
17
22
1.95
65498856--65498886
16
1.9
16
93
0
53
51
6
32
9
1.60
65502453--65502496
22
2.0
22
95
0
79
25
36
4
34
1.76
65505497--65505535
18
2.1
18
85
4
51
25
35
15
23
1.94
65511695--65511777
30
2.7
31
76
12
91
13
21
1
63
1.35
65511846--65511909
5
12.0
5
75
18
51
3
17
4
75
1.11
65511846--65511914
27
2.5
26
81
9
84
2
15
5
75
1.12
65511848--65511920
21
3.4
21
79
11
60
2
16
5
75
1.11
65512907--65512940
15
2.2
15
89
5
50
32
8
8
50
1.64
65514490--65514586
30
3.2
30
76
2
106
27
16
27
27
1.97
65514927--65514983
29
2.0
29
92
0
96
24
0
29
45
1.53
65518172--65518227
30
1.9
28
85
7
76
12
30
3
53
1.55
65519536--65519592
29
2.0
29
92
0
96
24
0
29
45
1.53
65523301--65523327
10
2.7
10
100
0
54
18
11
29
40
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65526494--65526716
40
5.6
39
85
3
241
26
27
20
24
1.99
65526494--65526716
120
1.9
119
81
6
272
26
27
20
24
1.99
65534391--65534612
40
5.6
40
85
4
236
26
27
21
24
1.99
65534544--65534621
40
1.9
41
82
10
97
26
28
21
23
1.99
65540716--65540762
10
4.7
10
84
7
60
36
14
27
21
1.93
65542449--65542477
13
2.2
13
100
0
58
27
0
10
62
1.28
65544684--65544711
4
7.0
4
100
0
56
25
0
0
75
0.81
65551642--65551687
10
4.5
10
81
5
56
15
23
21
39
1.92
65551639--65551687
21
2.4
20
89
3
71
14
22
22
40
1.90
65551912--65551940
13
2.2
13
100
0
58
27
0
10
62
1.28
65553316--65553346
13
2.4
13
88
0
53
70
9
0
19
1.14
65553652--65553706
29
2.0
28
82
10
69
40
20
18
21
1.92
65561147--65561244
27
3.5
28
90
2
135
26
13
28
31
1.94
65561175--65561257
27
3.0
27
87
5
96
30
12
25
32
1.92
65561147--65561258
28
4.0
27
83
6
98
28
12
25
33
1.92
65564316--65564367
27
2.0
26
82
10
63
34
1
19
44
1.62
65575714--65575840
43
3.0
43
80
9
159
22
16
28
32
1.96
65576097--65576402
149
2.1
150
92
2
510
25
9
19
46
1.80
65578660--65578834
45
3.8
46
79
13
216
29
29
20
20
1.98
65578667--65578837
93
1.8
92
96
1
315
28
29
21
21
1.98
65586228--65586401
45
3.8
45
78
12
201
29
29
20
20
1.98
65586235--65586405
93
1.8
92
93
1
297
28
29
21
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65588456--65588693
49
4.8
49
85
4
273
26
18
26
28
1.98
65591128--65591211
31
2.7
31
94
5
145
27
26
17
28
1.98
65591235--65591325
42
2.2
42
97
0
173
32
20
15
30
1.94
65591461--65591545
25
3.5
24
79
9
73
27
22
22
28
1.99
65591479--65591543
25
2.6
25
90
4
96
23
24
27
24
2.00
65592471--65592712
27
8.9
27
77
6
139
30
9
19
41
1.82
65592559--65592717
54
2.9
54
80
3
169
29
10
20
40
1.85
65592535--65592684
81
1.9
81
85
2
212
28
7
21
43
1.79
65592535--65592717
81
2.3
81
81
5
201
28
9
19
42
1.82
65592720--65592953
27
8.7
27
86
1
308
38
6
24
29
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349