genome.fa.s1.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  127  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40547752--40547929	27	6.6	27	83	3	205	26	15	28	29	1.96
40547753--40547908	82	1.9	81	88	3	233	26	15	28	29	1.96
40547749--40547929	82	2.2	81	83	2	229	27	15	27	29	1.96
40555217--40555394	27	6.6	27	83	3	205	26	15	28	29	1.96
40555218--40555373	82	1.9	81	88	3	233	26	15	28	29	1.96
40555214--40555394	82	2.2	81	83	2	229	27	15	27	29	1.96
40557262--40557286	8	3.1	8	100	0	50	24	0	16	60	1.36
40559144--40559500	45	7.9	45	76	8	208	20	19	17	43	1.89
40559420--40559488	24	3.0	23	65	12	61	24	20	13	42	1.87
40564905--40565075	93	1.8	93	94	0	306	28	28	21	22	1.99
40564897--40565072	46	3.8	46	78	12	207	28	27	21	22	1.99
40565498--40565557	30	2.0	30	87	6	86	31	25	6	36	1.82
40568550--40568774	49	4.5	49	84	2	279	25	19	26	28	1.98
40568543--40568782	99	2.4	100	83	2	295	25	20	26	27	1.99
40572346--40572370	13	1.9	13	100	0	50	76	0	0	24	0.80
40573376--40573408	17	1.9	17	88	11	50	42	12	3	42	1.57
40581893--40582042	41	3.7	41	83	3	196	20	22	28	30	1.98
40581908--40582021	40	2.8	41	86	2	149	21	22	27	28	1.99
40594122--40594186	6	10.8	6	91	0	94	72	9	1	16	1.18
40594119--40594186	18	3.8	18	94	0	109	73	8	1	16	1.15
40595896--40595922	14	1.9	14	100	0	54	74	0	3	22	0.98
40604540--40604566	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40606807--40607028	40	5.6	40	90	1	340	26	26	23	23	2.00
40608916--40608979	6	10.7	6	74	12	51	3	17	1	78	0.96
40608916--40608979	17	3.6	18	74	14	60	3	17	1	78	0.96
40610257--40610304	20	2.5	20	78	18	57	29	18	25	27	1.98
40613141--40613171	16	1.9	16	93	0	53	35	22	0	41	1.54
40613138--40613177	20	2.0	20	85	0	53	37	22	0	40	1.54
40613431--40613617	55	3.5	53	77	7	171	21	26	18	33	1.96
40617324--40617397	29	2.6	29	89	4	105	25	16	32	25	1.96
40621641--40621690	26	1.9	26	92	8	84	32	18	10	40	1.83
40621834--40621876	6	7.2	6	89	0	50	25	32	0	41	1.56
40623953--40623977	13	1.9	13	100	0	50	48	0	12	40	1.40
40625782--40625815	18	1.9	18	88	5	52	58	0	29	11	1.33
40627796--40628061	101	2.6	101	92	0	424	29	14	27	28	1.95
40627798--40628060	33	7.8	34	67	8	115	29	14	28	28	1.95
40629719--40629889	39	4.3	40	92	2	258	25	22	28	23	2.00
40629719--40629922	79	2.6	79	83	5	218	26	22	27	24	1.99
40632404--40632501	41	2.4	41	92	1	169	20	26	35	17	1.94
40633292--40633329	13	2.8	14	88	4	60	52	2	0	44	1.14
40633290--40633328	18	2.2	18	85	0	51	53	2	0	43	1.14
40644557--40644582	13	2.0	13	100	0	52	38	15	15	30	1.88
40646011--40646069	20	2.8	22	80	10	52	47	6	0	45	1.29
40646033--40646075	20	2.2	20	86	0	59	46	4	0	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40648896--40648942	23	2.0	23	95	0	85	34	12	14	38	1.85
40674166--40674196	14	2.2	14	94	0	53	67	0	0	32	0.91
40674168--40674204	19	2.0	18	94	5	65	67	0	0	32	0.91
40674179--40674312	62	2.2	63	84	7	170	64	5	4	26	1.34
40674592--40674662	37	1.9	37	100	0	142	16	0	53	29	1.44
40674629--40674691	29	2.2	29	85	5	83	17	1	49	31	1.56
40674893--40675506	133	4.6	133	89	2	908	26	22	21	29	1.99
40674918--40675506	268	2.2	265	90	2	912	26	22	21	29	1.99
40676763--40676845	27	3.1	26	78	14	98	0	19	1	79	0.80
40676788--40676836	13	3.8	14	82	12	61	0	26	0	73	0.83
40679418--40679458	21	2.0	21	90	9	66	17	17	24	41	1.89
40681244--40681294	13	4.1	12	78	16	50	66	0	3	29	1.09
40681590--40681642	14	3.7	14	82	5	54	58	1	1	37	1.20
40681614--40681650	19	2.0	18	94	5	65	67	0	0	32	0.91
40682037--40682107	37	1.9	37	94	0	124	16	0	52	30	1.45
40682263--40682299	18	2.1	18	89	0	56	21	43	0	35	1.53
40691285--40691318	13	2.6	13	95	0	59	32	23	8	35	1.86
40691841--40691885	18	2.5	18	88	0	63	20	28	15	35	1.93
40701942--40702148	93	2.1	97	81	8	235	29	28	16	25	1.97
40701960--40702152	47	4.0	49	82	9	209	30	29	16	23	1.96
40702622--40702663	19	2.2	19	100	0	84	33	9	4	52	1.55
40710937--40710975	18	2.2	18	95	0	69	23	0	12	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40718704--40718728	13	1.9	13	100	0	50	88	0	12	0	0.53
40724264--40724310	23	2.0	23	100	0	94	48	0	38	12	1.41
40729421--40729528	26	4.2	26	92	0	180	33	7	23	36	1.83
40730705--40730734	8	3.8	8	90	0	51	43	26	26	3	1.70
40731122--40731206	27	3.1	27	80	9	93	17	23	23	35	1.95
40731135--40731226	27	3.4	27	78	14	91	21	23	19	34	1.96
40732487--40732563	40	1.9	39	84	7	102	66	3	0	29	1.10
40734587--40734612	13	2.0	13	100	0	52	61	30	0	7	1.24
40734813--40734851	16	2.4	16	100	0	78	30	53	7	7	1.57
40738957--40739054	48	2.0	48	96	0	178	60	6	4	29	1.40
40739128--40739162	14	2.5	14	90	0	52	62	11	5	20	1.48
40739174--40739226	24	2.2	25	86	3	72	75	3	13	7	1.15
40739917--40739958	22	1.9	22	85	9	59	38	0	7	54	1.28
40740948--40741012	24	2.7	24	85	4	87	21	20	33	24	1.97
40743765--40743797	16	2.0	17	94	5	59	30	0	6	63	1.18
40743766--40743818	17	3.1	17	83	8	54	24	1	5	67	1.22
40743785--40743818	18	1.9	17	88	5	50	20	2	5	70	1.21
40759830--40759887	31	1.9	29	86	13	82	51	5	3	39	1.41
40759840--40759930	17	5.4	17	69	21	66	50	5	1	42	1.32
40769135--40769172	20	1.9	19	89	5	58	42	5	0	52	1.24
40769259--40769292	12	2.8	12	95	0	59	50	0	2	47	1.16
40769204--40769320	62	1.9	59	83	8	146	42	3	3	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40769264--40769323	16	3.7	16	69	10	50	45	0	1	53	1.10
40773010--40773042	16	2.0	17	88	5	50	36	0	3	60	1.12
40785799--40785874	31	2.5	31	77	12	84	38	13	17	31	1.88
40789595--40789658	30	2.1	29	83	8	83	46	6	1	45	1.37
40793605--40793705	26	3.9	26	78	10	82	53	2	6	36	1.43
40793693--40793773	32	2.5	32	80	11	94	60	4	2	32	1.31
40795956--40796001	11	3.9	12	75	13	51	36	4	2	56	1.31
40795938--40796042	17	5.9	17	75	18	81	36	5	1	56	1.34
40796054--40796086	13	2.4	14	90	5	50	39	3	0	57	1.14
40796123--40796155	12	2.6	13	90	4	50	27	3	6	63	1.32
40797495--40797595	26	3.9	26	78	10	82	53	2	6	36	1.43
40797583--40797663	32	2.5	32	80	11	94	60	4	2	32	1.31
40799871--40799916	11	3.9	12	75	13	51	36	4	2	56	1.31
40799853--40799957	17	5.9	17	75	18	81	36	5	1	56	1.34
40799945--40800009	13	4.8	13	76	12	60	33	3	1	61	1.21
40800037--40800069	12	2.6	13	90	4	50	27	3	6	63	1.32
40803942--40804005	18	3.4	18	73	12	65	35	25	25	14	1.93
40814937--40815441	44	11.5	45	67	10	231	33	20	23	21	1.97
40814911--40815679	88	8.7	89	83	3	907	33	20	24	21	1.97
40814845--40815679	176	4.8	176	86	3	1043	33	20	24	21	1.97
40815877--40815934	28	2.1	28	86	0	80	43	10	32	13	1.78
40816005--40816109	41	2.5	44	86	7	137	33	20	18	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40816005--40816214	44	4.8	44	76	9	173	30	19	22	27	1.98
40816005--40816212	88	2.4	86	76	7	206	30	19	22	27	1.98
40822153--40822325	46	3.7	46	76	10	181	28	29	20	21	1.98
40822160--40822331	93	1.8	93	89	0	272	27	29	20	22	1.99
40822204--40822347	46	3.1	45	70	18	109	29	27	19	23	1.98
40831297--40831357	22	2.7	24	75	17	67	60	3	8	27	1.41
40831666--40831774	26	4.4	25	71	13	73	54	3	8	33	1.48
40831706--40831829	24	5.1	23	71	23	69	54	3	6	36	1.43
40831778--40831863	32	2.6	32	78	15	95	59	4	3	32	1.35
40834078--40834123	11	3.9	12	75	13	51	36	4	2	56	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349